Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc84.9 Carica papaya HOM05D005600 ORTHO05D006682 0.0e+00 1682.9 842 100.0
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 0.0e+00 1397.1 864 79.2
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 0.0e+00 1384.8 864 79.3
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1379.4 861 78.7
Atru.chr10.100 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1374.4 861 78.3
Atru.chr10.118 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1374.4 861 78.3
Manes.06G161000 Manihot esculenta HOM05D005600 ORTHO05D006682 0.0e+00 1367.4 866 78.4
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 0.0e+00 1365.5 866 78.9
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 0.0e+00 1355.5 863 78.7
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 0.0e+00 1354.3 865 77.3
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 0.0e+00 1347.0 860 77.1
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1346.3 860 77.0
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 0.0e+00 1338.9 873 76.4
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 0.0e+00 1338.2 867 77.4
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 0.0e+00 1338.2 861 76.2
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1335.5 867 77.4
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 0.0e+00 1334.3 864 77.2
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1334.3 867 77.3
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1333.9 865 76.6
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1328.5 878 75.2
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 0.0e+00 1327.4 863 76.0
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 0.0e+00 1321.2 863 75.7
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 0.0e+00 1319.3 859 76.5
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1319.3 894 73.9
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1314.7 860 75.8
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 0.0e+00 1308.1 885 74.2
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 0.0e+00 1303.9 860 74.5
TWI39G0768 Tripterygium wilfordii HOM05D005600 ORTHO05D006682 0.0e+00 1302.3 860 75.1
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 0.0e+00 1302.0 866 73.6
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 0.0e+00 1301.2 865 74.3
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1295.0 866 74.8
Actinidia35417 Actinidia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1292.3 865 74.7
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1291.9 865 75.0
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1291.9 859 74.7
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 0.0e+00 1287.7 866 74.0
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 0.0e+00 1287.3 867 74.5
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 0.0e+00 1279.6 864 73.0
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1278.8 867 73.7
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 0.0e+00 1277.3 865 73.4
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 0.0e+00 1276.2 864 72.9
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1268.1 866 72.3
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 0.0e+00 1264.6 830 75.3
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1259.6 866 73.2
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 0.0e+00 1259.6 868 72.8
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 0.0e+00 1259.2 866 72.5
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 0.0e+00 1256.9 868 72.8
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 0.0e+00 1253.4 866 71.9
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1253.4 866 72.7
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 0.0e+00 1248.0 865 72.0
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 0.0e+00 1243.4 868 72.1
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 0.0e+00 1243.0 929 67.7
Nn3g21398 Nelumbo nucifera HOM05D005600 ORTHO05D006682 0.0e+00 1241.1 845 73.6
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1239.2 867 71.3
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 0.0e+00 1233.4 866 71.6
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1227.2 865 69.9
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1226.8 865 69.8
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 0.0e+00 1224.5 863 70.8
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 0.0e+00 1221.8 863 70.6
DCAR_009654 Daucus carota HOM05D005600 ORTHO05D006682 0.0e+00 1220.7 878 70.2
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1218.4 840 72.7
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 0.0e+00 1216.1 860 70.1
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 0.0e+00 1212.6 862 71.1
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1211.4 863 70.1
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 0.0e+00 1210.3 864 69.7
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 0.0e+00 1210.3 860 71.7
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1208.7 866 70.8
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 0.0e+00 1208.0 863 69.9
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 0.0e+00 1205.3 1007 62.8
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1204.5 863 69.8
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1204.1 866 70.6
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1203.0 859 68.6
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1203.0 860 70.1
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 0.0e+00 1203.0 863 69.6
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1201.4 863 69.6
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 0.0e+00 1199.5 863 69.5
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 0.0e+00 1198.3 863 69.4
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 0.0e+00 1197.6 864 69.9
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 0.0e+00 1193.7 863 70.2
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 0.0e+00 1191.4 910 66.4
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 0.0e+00 1189.5 869 68.5
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 0.0e+00 1184.5 864 68.6
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 0.0e+00 1177.5 922 65.6
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 0.0e+00 1168.3 863 68.1
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 0.0e+00 1166.4 864 68.6
Lsat_1_v5_gn_7_110720 Lactuca sativa HOM05D005600 ORTHO05D006682 0.0e+00 1164.8 864 67.5
Sabra09G0035700 Salix brachista HOM05D005600 ORTHO05D006682 0.0e+00 1164.8 949 64.6
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1143.6 900 67.1
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 0.0e+00 1134.0 862 65.9
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 0.0e+00 1130.2 948 63.0
COL.COLO4_36487 Corchorus olitorius HOM05D005600 ORTHO05D006682 0.0e+00 1127.9 751 76.4
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1115.9 785 71.6
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 0.0e+00 1112.8 872 64.7
Hma1.2p1_0151F.1_g067180 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 0.0e+00 1088.2 695 77.4
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 1.2e-310 1069.7 865 61.6
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 2.2e-309 1065.4 896 62.5
Ca_08130_v3 Cicer arietinum L. HOM05D005600 ORTHO05D006682 5.3e-308 1060.8 796 68.5
MD11G1186900 Malus domestica HOM05D005600 ORTHO05D006682 9.1e-300 1033.5 645 78.3
ClCG03G012970 Citrullus lanatus HOM05D005600 ORTHO05D006682 8.9e-271 937.2 630 74.8
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 4.3e-265 918.3 879 53.1
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 1.2e-262 910.2 873 52.8
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 1.9e-257 892.9 876 51.5
Lj2A14G43 Lonicera japonica HOM05D005600 ORTHO05D006682 2.2e-221 773.1 584 70.2
Eucgr.B03713 Eucalyptus grandis HOM05D005600 ORTHO05D006682 3.8e-221 772.3 494 77.7
SMO236G0107 Selaginella moellendorffii HOM05D005600 ORTHO05D006682 4.6e-219 765.4 871 44.7
HPP92_006936 Vanilla planifolia HOM05D005600 ORTHO05D006682 6.7e-218 761.5 554 68.2
CDE01G0031 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 1.9e-217 760.0 856 49.6
Nitab4.5_0008957g0040 Nicotiana tabacum HOM05D005600 ORTHO05D006682 5.0e-197 692.2 487 71.7
CBR_g4015 Chara braunii HOM05D005600 ORTHO05D006682 1.5e-193 680.6 965 40.3
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 5.3e-183 645.6 849 45.6
Zm00001eb016670 Zea mays HOM05D005600 ORTHO05D006682 2.6e-177 626.7 505 61.4
VMungo1383G0719 Vigna mungo HOM05D005600 ORTHO05D006682 3.4e-177 626.3 447 71.4
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 7.0e-167 592.0 381 74.3
SHI27472 Sapria himalayana HOM05D005600 ORTHO05D006682 8.0e-163 578.6 481 59.3
BcaC04g23081 Brassica carinata HOM05D005600 ORTHO05D006682 1.6e-142 511.1 614 48.7
Eucgr.B03714 Eucalyptus grandis HOM05D005600 ORTHO05D006682 1.8e-130 471.1 327 70.9
SEGI_34765 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.7e-128 464.5 377 61.8
BolC9t54127H Brassica oleracea HOM05D005600 ORTHO05D006682 4.8e-91 340.1 388 53.1
CDE10G0769 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 8.2e-83 312.8 162 88.3
ClCG03G012990 Citrullus lanatus HOM05D005600 ORTHO05D006682 5.5e-79 300.1 236 65.3
PRCOL_00004432 Prasinoderma coloniale HOM05D005600 ORTHO05D006682 4.2e-63 247.3 690 27.8
MCO11G503 Micromonas commoda HOM05D005600 ORTHO05D006682 9.5e-55 219.5 638 27.0
Lj2A14T50 Lonicera japonica HOM05D005600 ORTHO05D006682 2.3e-48 198.4 155 65.8
SEGI_17739 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 3.7e-35 154.5 125 60.0
Cre12.g524100 Chlamydomonas reinhardtii HOM05D005600 ORTHO05D006682 1.2e-30 139.4 363 30.6
SEGI_12823 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 2.1e-30 138.7 94 64.9
Sabra09G0035600 Salix brachista HOM05D005600 ORTHO05D006682 1.8e-29 135.6 82 75.6
MBI19_g44409_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 3.4e-28 131.3 117 59.0
VMungo1383G3426 Vigna mungo HOM05D000002 ORTHO05D000001 1.7e-24 119.0 100 58.0
Cfa024653 Carpinus fangiana HOM05D005600 ORTHO05D006682 2.5e-23 115.2 313 24.6
A09p10400 Brassica napus HOM05D005600 ORTHO05D006682 4.9e-19 100.9 95 52.6
SEGI_14354 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.1e-18 99.8 133 44.4
VMungo1383G0187 Vigna mungo HOM05D005600 ORTHO05D006682 4.6e-17 94.4 42 97.6
Atru.chr3.1844 Acer truncatum HOM05D005600 ORTHO05D006682 3.9e-16 91.3 115 43.5
MBI19_g44872_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 1.2e-09 69.7 85 47.1
QL10p024418 Quercus lobata HOM05D005600 ORTHO05D006682 2.7e-09 68.6 43 72.1
Sabra16G0154900 Salix brachista HOM05D005600 ORTHO05D349220 2.5e-07 62.0 42 64.3
Hund17892 Selenicereus undatus HOM05D026955 ORTHO05D006682 9.6e-07 60.1 28 92.9


User provided reference genes

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