Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc652.1 Carica papaya HOM05D002267 ORTHO05D008106 3.3e-175 618.2 304 100.0
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 3.6e-105 385.6 481 47.6
Prupe.3G243000 Prunus persica HOM05D002267 ORTHO05D008106 3.0e-104 382.5 500 46.4
Thecc.04G144800 Theobroma cacao HOM05D002267 ORTHO05D008106 4.0e-104 382.1 500 46.0
Duzib133G0586 Durio zibethinus HOM05D002267 ORTHO05D008106 7.5e-103 377.9 501 45.5
Potri.017G109600 Populus trichocarpa HOM05D002267 ORTHO05D008106 2.2e-102 376.3 498 46.2
CSS0046264 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D008106 8.3e-102 374.4 485 44.9
arahy.Tifrunner.gnm1.ann1.WK12I4 Arachis hypogaea HOM05D002267 ORTHO05D008106 1.1e-101 374.0 461 48.2
CiPaw.03G006900 Carya illinoinensis HOM05D002267 ORTHO05D008106 3.5e-100 369.0 497 46.1
COL.COLO4_38269 Corchorus olitorius HOM05D002267 ORTHO05D008106 3.5e-100 369.0 502 45.0
Gorai.007G186800 Gossypium raimondii HOM05D002267 ORTHO05D008106 4.5e-100 368.6 500 44.8
TWI32G0057 Tripterygium wilfordii HOM05D002267 ORTHO05D008106 1.0e-99 367.5 506 43.9
Gohir.D11G174300 Gossypium hirsutum HOM05D002267 ORTHO05D008106 1.3e-99 367.1 500 44.6
Manes.02G064500 Manihot esculenta HOM05D002267 ORTHO05D008106 8.6e-99 364.4 488 44.9
arahy.Tifrunner.gnm1.ann1.50L6WD Arachis hypogaea HOM05D002267 ORTHO05D008106 9.5e-98 360.9 485 45.2
TPR.G9667 Trifolium pratense HOM05D002267 ORTHO05D008106 9.5e-98 360.9 490 44.3
Cc07_g20900 Coffea canephora HOM05D002267 ORTHO05D008106 2.1e-97 359.8 487 44.4
Ciclev10011534m.g Citrus clementina HOM05D002267 ORTHO05D008106 3.6e-97 359.0 496 45.0
FvH4_6g45680 Fragaria vesca HOM05D002267 ORTHO05D008106 8.0e-97 357.8 498 44.0
FAN02G3769 Fragaria x ananassa HOM05D002267 ORTHO05D008106 1.0e-96 357.5 498 44.0
RcHm_v2.0_Chr2g0163831 Rosa chinensis HOM05D002267 ORTHO05D008106 1.0e-96 357.5 498 44.2
FAN14G5916 Fragaria x ananassa HOM05D002267 ORTHO05D008106 1.8e-96 356.7 498 43.8
Lj7A8T41 Lonicera japonica HOM05D002267 ORTHO05D008106 1.8e-96 356.7 481 43.7
TAR622G0224 Trochodendron aralioides HOM05D002267 ORTHO05D008106 1.8e-96 356.7 485 43.9
Gohir.A11G168000 Gossypium hirsutum HOM05D002267 ORTHO05D008106 2.3e-96 356.3 500 44.2
GSVIVG01036477001 Vitis vinifera HOM05D002267 ORTHO05D008106 6.8e-96 354.8 501 43.9
QL02p053647 Quercus lobata HOM05D002267 ORTHO05D008106 8.9e-96 354.4 501 44.1
Peaxi162Scf00876g00316 Petunia axillaris HOM05D002267 ORTHO05D008106 2.0e-95 353.2 500 44.0
Rhsim08G0080600 Rhododendron simsii HOM05D002267 ORTHO05D008106 2.0e-95 353.2 483 43.1
Medtr6g016665 Medicago truncatula HOM05D002267 ORTHO05D008106 4.4e-95 352.1 491 43.0
Carub.0007s3738 Capsella rubella HOM05D002267 ORTHO05D008106 5.8e-95 351.7 502 44.2
Nn3g17631 Nelumbo nucifera HOM05D002267 ORTHO05D008106 7.5e-95 351.3 488 43.0
BolC6t37034H Brassica oleracea HOM05D002267 ORTHO05D008106 9.8e-95 350.9 439 47.4
Thhalv10027732m.g Eutrema salsugineum HOM05D002267 ORTHO05D008106 9.8e-95 350.9 496 44.6
Hund13744 Selenicereus undatus HOM05D002267 ORTHO05D008106 2.2e-94 349.7 485 43.7
AT5G38530 Arabidopsis thaliana HOM05D002267 ORTHO05D008106 3.7e-94 349.0 482 45.2
Atru.chr8.780 Acer truncatum HOM05D002267 ORTHO05D008106 4.9e-94 348.6 534 42.3
Phvul.004G048300 Phaseolus vulgaris HOM05D002267 ORTHO05D008106 4.9e-94 348.6 498 42.6
Hma1.2p1_1233F.1_g268980 Hydrangea macrophylla HOM05D002267 ORTHO05D008106 6.4e-94 348.2 481 43.2
vmacro18096 Vaccinium macrocarpon HOM05D002267 ORTHO05D008106 8.3e-94 347.8 479 42.8
BraA07t29678Z Brassica rapa HOM05D002267 ORTHO05D008106 1.1e-93 347.4 463 45.6
CANSAT64G1963 Cannabis sativa HOM05D002267 ORTHO05D008106 1.1e-93 347.4 499 43.3
BcaC08g44387 Brassica carinata HOM05D002267 ORTHO05D008106 1.4e-93 347.1 463 45.6
BolC6t37030H Brassica oleracea HOM05D002267 ORTHO05D008106 1.4e-93 347.1 463 45.6
Lj2g0002108 Lotus japonicus HOM05D002267 ORTHO05D008106 1.4e-93 347.1 485 43.3
Sopen12g032060 Solanum pennellii HOM05D002267 ORTHO05D008106 1.4e-93 347.1 482 45.0
THA.LOC104823868 Tarenaya hassleriana HOM05D002267 ORTHO05D008106 1.9e-93 346.7 500 42.6
Aa31LG9G17020 Aethionema arabicum HOM05D002267 ORTHO05D008106 2.4e-93 346.3 497 43.7
Aqoxy3G00421 Aquilegia oxysepala HOM05D001046 ORTHO05D005883 2.4e-93 346.3 488 42.8
AL7G52040 Arabidopsis lyrata HOM05D002267 ORTHO05D008106 2.4e-93 346.3 499 43.9
A07p19770 Brassica napus HOM05D002267 ORTHO05D008106 2.4e-93 346.3 463 45.4
Nitab4.5_0000943g0040 Nicotiana tabacum HOM05D002267 ORTHO05D008106 3.2e-93 345.9 487 43.9
BcaC08g44390 Brassica carinata HOM05D002267 ORTHO05D008106 4.1e-93 345.5 453 45.9
Sp7g03530 Schrenkiella parvula HOM05D002267 ORTHO05D008106 4.1e-93 345.5 466 45.3
Solyc12g096190.2 Solanum lycopersicum HOM05D002267 ORTHO05D008106 4.1e-93 345.5 482 44.8
CARHR213930 Cardamine hirsuta HOM05D002267 ORTHO05D008106 5.4e-93 345.1 465 45.2
PGSC0003DMG400029380 Solanum tuberosum HOM05D002267 ORTHO05D008106 7.0e-93 344.7 482 44.6
C06p18220 Brassica napus HOM05D002267 ORTHO05D008106 1.2e-92 344.0 463 45.1
Sed0012629 Sechium edule HOM05D002267 ORTHO05D008106 2.7e-92 342.8 488 42.6
CAN.G947.26 Capsicum annuum HOM05D002267 ORTHO05D008106 4.6e-92 342.0 483 43.5
SGA_v2.0_scaffold204G41665 Striga asiatica HOM05D002267 ORTHO05D008106 1.0e-91 340.9 480 42.9
EL10Ac2g04631 Beta vulgaris HOM05D002267 ORTHO05D008106 3.0e-91 339.3 474 42.4
BcaC02g09654 Brassica carinata HOM05D002267 ORTHO05D008106 6.6e-91 338.2 463 43.6
Eucgr.J01455 Eucalyptus grandis HOM05D002267 ORTHO05D008106 1.1e-90 337.4 473 43.3
BcaB06g27229 Brassica carinata HOM05D002267 ORTHO05D008106 1.5e-90 337.0 463 43.4
Nitab4.5_0010692g0020 Nicotiana tabacum HOM05D002267 ORTHO05D008106 1.5e-90 337.0 471 43.9
BolC4t26551H Brassica oleracea HOM05D002267 ORTHO05D008106 7.3e-90 334.7 495 42.2
FAN09G0996 Fragaria x ananassa HOM05D002267 ORTHO05D008106 7.3e-90 334.7 459 44.2
ClCG11G005210 Citrullus lanatus HOM05D002267 ORTHO05D008106 1.2e-89 334.0 473 42.9
C04p49650 Brassica napus HOM05D002267 ORTHO05D008106 4.7e-89 332.0 495 42.0
CsaV3_5G038950 Cucumis sativus L. HOM05D002267 ORTHO05D008106 6.2e-89 331.6 478 42.3
PSO478G3399 Papaver somniferum HOM05D002267 ORTHO05D008106 6.2e-89 331.6 482 41.3
Sc11g0008070 Simmondsia chinensis HOM05D002267 ORTHO05D008106 6.2e-89 331.6 473 43.8
A04p15410 Brassica napus HOM05D002267 ORTHO05D008106 8.0e-89 331.3 495 41.8
A04p11480 Brassica napus HOM05D002267 ORTHO05D008106 1.1e-88 330.9 464 43.1
C04p45200 Brassica napus HOM05D002267 ORTHO05D008106 1.1e-88 330.9 464 43.1
BolC4t26102H Brassica oleracea HOM05D002267 ORTHO05D008106 1.1e-88 330.9 464 43.1
BraA04t16813Z Brassica rapa HOM05D002267 ORTHO05D008106 1.1e-88 330.9 464 43.1
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 6.8e-88 328.2 487 42.1
BcaB06g27719 Brassica carinata HOM05D002267 ORTHO05D008106 1.5e-87 327.0 463 42.8
Cfa007983 Carpinus fangiana HOM05D002267 ORTHO05D008106 2.0e-87 326.6 500 41.8
Lju237C1T8 Lonicera japonica HOM05D002267 ORTHO05D008106 2.0e-87 326.6 464 43.1
Migut.H00553 Erythranthe guttata HOM05D002267 ORTHO05D008106 7.5e-87 324.7 499 41.1
Lsat_1_v5_gn_2_86340 Lactuca sativa HOM05D002267 ORTHO05D008106 9.8e-87 324.3 439 44.4
VMungo0464G1284 Vigna mungo HOM05D002267 ORTHO05D008106 2.9e-86 322.8 503 41.4
Haze_14090 Corylus avellana HOM05D002267 ORTHO05D008106 1.9e-85 320.1 495 41.8
DCAR_007525 Daucus carota HOM05D002267 ORTHO05D008106 2.4e-85 319.7 465 40.6
Glyma.13G049500 Glycine max HOM05D002267 ORTHO05D008106 9.2e-85 317.8 463 42.1
PGR042G0715 Punica granatum HOM05D002267 ORTHO05D008106 9.2e-85 317.8 439 44.0
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 2.7e-84 316.2 481 40.5
MBI15_g18378_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D008106 2.3e-83 313.2 487 40.9
SalBow1G0199 Salvia bowleyana HOM05D002267 ORTHO05D008106 2.3e-83 313.2 480 41.0
SalBow1G5678 Salvia bowleyana HOM05D002267 ORTHO05D008106 2.3e-83 313.2 480 41.0
Psat1g063360 Pisum sativum HOM05D002267 ORTHO05D008106 5.1e-83 312.0 486 40.7
C06p18190 Brassica napus HOM05D002267 ORTHO05D008106 1.1e-82 310.8 479 42.2
ClCG11G005200 Citrullus lanatus HOM05D002267 ORTHO05D008106 1.5e-82 310.5 455 41.8
HanXRQChr14g0448111 Helianthus annuus HOM05D002267 ORTHO05D008106 2.5e-82 309.7 439 43.1
MELO3C022074.2 Cucumis melo HOM05D002267 ORTHO05D008106 1.6e-81 307.0 495 39.6
PSO017G0854 Papaver somniferum HOM05D002267 ORTHO05D008106 3.6e-81 305.8 441 41.3
AUR62008941 Chenopodium quinoa HOM05D002267 ORTHO05D008106 6.2e-81 305.1 469 40.1
MSTRG.23837 Avicennia marina HOM05D002267 ORTHO05D008106 1.4e-80 303.9 480 40.0
BcaC02g08872 Brassica carinata HOM05D002267 ORTHO05D008106 1.8e-80 303.5 477 40.5
Sed0026912 Sechium edule HOM05D002267 ORTHO05D008106 8.9e-80 301.2 437 41.9
Os06g0632200 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D008106 1.5e-79 300.4 441 40.1
ATR0691G098 Amborella trichopoda HOM05D002267 ORTHO05D008106 9.9e-79 297.7 441 40.1
Pp3c14_17980 Physcomitrium patens HOM05D002267 ORTHO05D008106 2.4e-77 293.1 438 40.0
PSO017G6061 Papaver somniferum HOM05D002267 ORTHO05D008106 2.3e-75 286.6 494 38.1
Ca_20733_v3 Cicer arietinum L. HOM05D002267 ORTHO05D008106 1.2e-73 280.8 488 37.5
PSO675G3188 Papaver somniferum HOM05D002267 ORTHO05D008106 2.8e-73 279.6 434 39.2
SEGI_22192 Sequoiadendron giganteum HOM05D002267 ORTHO05D008106 3.6e-73 279.3 449 38.3
SMO358G0654 Selaginella moellendorffii HOM05D002267 ORTHO05D008106 8.1e-73 278.1 440 38.6
EL10Ac5g12857 Beta vulgaris HOM05D002267 ORTHO05D008106 1.4e-69 267.3 462 37.0
Dinv33906 Davidia involucrata HOM05D002267 ORTHO05D008106 4.8e-65 252.3 194 67.0
MD17G1071900 Malus domestica HOM05D002267 ORTHO05D008106 1.2e-63 247.7 367 40.9
FAN05G0376 Fragaria x ananassa HOM05D002267 ORTHO05D008106 3.8e-62 242.7 208 63.5
Zm00001eb387730 Zea mays HOM05D002267 ORTHO05D008106 3.0e-59 233.0 368 38.9
COL.COLO4_38268 Corchorus olitorius HOM05D002267 ORTHO05D025149 9.6e-58 228.0 150 72.7
Lalb_Chr02g0158461 Lupinus albus HOM05D002267 ORTHO05D008106 1.4e-56 224.2 205 60.0
unitig_899.g15121 Utricularia gibba HOM05D002267 ORTHO05D008106 9.3e-53 211.5 172 63.4
Actinidia26313 Actinidia chinensis HOM05D002267 ORTHO05D008106 1.8e-51 207.2 339 39.8
MBI15_g25073_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D008106 1.8e-48 197.2 115 80.0
Lalb_Chr02g0158451 Lupinus albus HOM05D002267 ORTHO05D008106 2.5e-45 186.8 115 75.7
MELO3C033536.2 Cucumis melo HOM05D002267 ORTHO05D008106 1.6e-44 184.1 115 72.2
unitig_899.g15122 Utricularia gibba HOM05D002267 ORTHO05D008106 1.6e-44 184.1 115 71.3
Glyma.19G042350 Glycine max HOM05D002267 ORTHO05D008106 1.5e-42 177.6 115 73.9
FAN05G2157 Fragaria x ananassa HOM05D002267 ORTHO05D008106 2.5e-29 133.7 122 58.2
VMungo0464G1436 Vigna mungo HOM05D002267 ORTHO05D025149 7.2e-29 132.1 84 73.8
ClCG00G006430 Citrullus lanatus HOM05D002267 ORTHO05D008106 8.2e-25 118.6 67 82.1
Dinv12979 Davidia involucrata HOM05D002267 ORTHO05D025149 3.4e-23 113.2 90 64.4
COL.COLO4_05025 Corchorus olitorius HOM05D002267 ORTHO05D025149 1.1e-18 98.2 76 61.8
MD17G1071800 Malus domestica HOM05D002267 ORTHO05D025149 9.1e-16 88.6 83 59.0
Solyc10g005320.3 Solanum lycopersicum HOM05D001748 ORTHO05D001759 2.4e-08 63.9 119 34.5
BcaC07g38673 Brassica carinata HOM05D001748 ORTHO05D001759 5.3e-08 62.8 133 32.3
C08p14590 Brassica napus HOM05D001748 ORTHO05D001759 5.3e-08 62.8 133 32.3
C08p14710 Brassica napus HOM05D001748 ORTHO05D001759 5.3e-08 62.8 133 32.3
BolC8t49108H Brassica oleracea HOM05D001748 ORTHO05D001759 5.3e-08 62.8 133 32.3
Sopen10g001310 Solanum pennellii HOM05D001748 ORTHO05D001759 5.3e-08 62.8 119 34.5
C09p13860 Brassica napus HOM05D001748 ORTHO05D001759 2.0e-07 60.8 133 31.6
BolC9t54277H Brassica oleracea HOM05D001748 ORTHO05D001759 2.0e-07 60.8 133 31.6
PGSC0003DMG400011282 Solanum tuberosum HOM05D001748 ORTHO05D001759 2.0e-07 60.8 119 33.6
A09p11760 Brassica napus HOM05D001748 ORTHO05D001759 2.7e-07 60.5 116 34.5
BraA09t36824Z Brassica rapa HOM05D001748 ORTHO05D001759 2.7e-07 60.5 116 34.5
Carub.0001s1122 Capsella rubella HOM05D001748 ORTHO05D001759 2.7e-07 60.5 133 30.8
BcaB03g13250 Brassica carinata HOM05D001748 ORTHO05D001759 3.5e-07 60.1 133 32.3
Solyc10g018390.3 Solanum lycopersicum HOM05D001748 ORTHO05D001759 4.5e-07 59.7 119 33.6
AL1G22710 Arabidopsis lyrata HOM05D001748 ORTHO05D001759 7.7e-07 58.9 123 30.9
A08p33380 Brassica napus HOM05D001748 ORTHO05D001759 7.7e-07 58.9 133 30.8
BraA08t35256Z Brassica rapa HOM05D001748 ORTHO05D001759 7.7e-07 58.9 133 30.8
Lalb_Chr05g0210881 Lupinus albus HOM05D001748 ORTHO05D001759 7.7e-07 58.9 128 33.6
BcaC05g25029 Brassica carinata HOM05D001748 ORTHO05D001759 1.0e-06 58.5 140 30.0
C05p09740 Brassica napus HOM05D001748 ORTHO05D001759 1.0e-06 58.5 140 30.0
BolC5t29715H Brassica oleracea HOM05D001748 ORTHO05D001759 1.0e-06 58.5 140 30.0
Thhalv10009923m.g Eutrema salsugineum HOM05D001748 ORTHO05D001759 1.0e-06 58.5 121 33.1
Glyma.11G003500 Glycine max HOM05D001748 ORTHO05D001759 1.0e-06 58.5 78 43.6
AT5G28237 Arabidopsis thaliana HOM05D001748 ORTHO05D001759 1.3e-06 58.2 123 31.7
PGR031G0667 Punica granatum HOM05D001748 ORTHO05D001759 1.3e-06 58.2 126 31.7
TPR.G35141 Trifolium pratense HOM05D001748 ORTHO05D001759 1.3e-06 58.2 60 48.3
VMungo1215G0075 Vigna mungo HOM05D001748 ORTHO05D001759 1.3e-06 58.2 78 43.6
BcaNung04802 Brassica carinata HOM05D001748 ORTHO05D001759 1.7e-06 57.8 214 28.0
C08p14560 Brassica napus HOM05D001748 ORTHO05D001759 1.7e-06 57.8 140 29.3
Gohir.D13G144300 Gossypium hirsutum HOM05D001748 ORTHO05D001759 2.2e-06 57.4 122 33.6
Gorai.013G161400 Gossypium raimondii HOM05D001748 ORTHO05D001759 2.2e-06 57.4 122 33.6
Sp1g10210 Schrenkiella parvula HOM05D001748 ORTHO05D001759 2.2e-06 57.4 133 30.8
Haze_12878 Corylus avellana HOM05D001748 ORTHO05D001759 3.8e-06 56.6 65 43.1
Sopen10g007890 Solanum pennellii HOM05D001748 ORTHO05D001759 3.8e-06 56.6 75 41.3
SGA_v2.0_scaffold7G03873 Striga asiatica HOM05D001748 ORTHO05D001759 3.8e-06 56.6 65 44.6
arahy.Tifrunner.gnm1.ann1.0H79QG Arachis hypogaea HOM05D001748 ORTHO05D001759 5.0e-06 56.2 60 48.3
arahy.Tifrunner.gnm1.ann1.A8YTMR Arachis hypogaea HOM05D001748 ORTHO05D001759 5.0e-06 56.2 60 48.3
arahy.Tifrunner.gnm1.ann1.PA1DXY Arachis hypogaea HOM05D001748 ORTHO05D001759 5.0e-06 56.2 60 48.3
CARHR011890 Cardamine hirsuta HOM05D001748 ORTHO05D001759 5.0e-06 56.2 116 32.8
BcaB03g13248 Brassica carinata HOM05D001748 ORTHO05D001759 6.5e-06 55.8 133 29.3
BcaC07g38671 Brassica carinata HOM05D001748 ORTHO05D001759 6.5e-06 55.8 109 33.9
MCO14G394 Micromonas commoda HOM05D001748 ORTHO05D001759 6.5e-06 55.8 72 40.3
Phvul.002G048100 Phaseolus vulgaris HOM05D001748 ORTHO05D001759 6.5e-06 55.8 60 46.7
Aa31LG1G3160 Aethionema arabicum HOM05D001748 ORTHO05D001759 8.5e-06 55.5 109 35.8


User provided reference genes

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