Gene: AT5G38530

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G38530
  • Transcript Identifier AT5G38530.1
  • Gene Type Coding gene
  • Location Chr5 : 15424097-15426294 : positive

Gene Family Information

  • ID HOM05D002267
  • #Genes/#Species 297/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G38530.1
  • symbol TSBtype2
  • uniprot Q9FFW8

Descriptions

  • Description tryptophan synthase beta type 2
  • Computational description tryptophan synthase beta type 2 (TSBtype2); FUNCTIONS IN: pyridoxal phosphate binding, tryptophan synthase activity, catalytic activity; INVOLVED IN: tryptophan biosynthetic process, metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Tryptophan synthase, beta chain-like (InterPro:IPR006316); BEST Arabidopsis thaliana protein match is: tryptophan synthase beta-subunit 2 (TAIR:AT4G27070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006568
IEA
GOA Databasetryptophan metabolic process
GO:0006568
IEA
InterProtryptophan metabolic process
GO:0000162
IEA
GOA Databasetryptophan biosynthetic process
GO:0000162
IDA
IBA
Gene Ontologytryptophan biosynthetic process1 2
GO:0000162
IEA
InterProtryptophan biosynthetic process
GO:0009073
IEA
GOA Databasearomatic amino acid family biosynthetic process
GO:0008652
IEA
GOA Databasecellular amino acid biosynthetic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016829
IEA
GOA Databaselyase activity
GO:0046537
ISO
PLAZA Homology (enrichment)2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity HOM05D002267
GO:0003824
ISO
PLAZA Homology (enrichment)catalytic activity HOM05D002267
GO:0030170
IEA
Gene Ontologypyridoxal phosphate binding
GO:0030170
IEA
InterPropyridoxal phosphate binding
GO:0004834
IEA
Gene Ontologytryptophan synthase activity
GO:0004834
IEA
InterProtryptophan synthase activity
GO:0052684
IDA
IBA
Gene OntologyL-serine hydro-lyase (adding indole, L-tryptophan-forming) activity1 2
GO:0042803
IDA
Gene Ontologyprotein homodimerization activity1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
HDA
Gene Ontologycytosol3
GO:0009507
ISM
Gene Ontologychloroplast

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR023026 Tryptophan synthase beta chain/beta chain-like
IPR006316 Tryptophan synthase, beta chain-like
IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme
IPR001926 Pyridoxal-phosphate dependent enzyme
IPR006654 Tryptophan synthase, beta chain
Mapman id Description
35.1 not assigned.annotated