Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 1.5e-141 506.1 244 100.0
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 1.2e-103 380.2 244 73.0
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 1.0e-102 377.1 244 72.5
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 1.3e-102 376.7 244 71.7
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 5.6e-101 371.3 244 70.5
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 1.1e-99 367.1 239 72.0
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 2.4e-99 365.9 244 70.1
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 3.1e-99 365.5 244 69.3
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 6.9e-99 364.4 244 70.5
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 1.2e-98 363.6 242 68.6
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 4.5e-98 361.7 243 68.3
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 5.8e-98 361.3 243 68.7
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 2.2e-97 359.4 244 69.3
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 8.4e-97 357.5 238 69.7
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 1.9e-96 356.3 237 68.4
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 3.2e-96 355.5 243 67.5
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 5.5e-96 354.8 245 69.8
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 1.2e-95 353.6 244 67.2
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.6e-95 353.2 243 67.5
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.6e-95 353.2 243 67.1
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 3.5e-95 352.1 245 66.9
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 3.0e-94 349.0 244 66.8
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 3.3e-93 345.5 239 66.9
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 5.6e-93 344.7 239 66.5
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 9.6e-93 344.0 241 66.0
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 9.6e-93 344.0 240 67.5
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 1.6e-92 343.2 236 68.6
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 2.1e-92 342.8 242 65.3
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 2.8e-92 342.4 245 68.2
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 2.8e-92 342.4 243 67.1
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 3.7e-92 342.0 244 66.0
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 1.8e-91 339.7 238 65.5
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 2.4e-91 339.3 246 64.2
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 2.4e-91 339.3 243 65.0
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 7.6e-90 334.3 246 63.8
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 1.0e-89 334.0 243 64.2
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 1.0e-89 334.0 242 64.0
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 1.7e-89 333.2 240 67.5
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 3.8e-89 332.0 240 67.5
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 1.9e-88 329.7 233 65.7
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 9.3e-88 327.4 242 62.8
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 1.6e-87 326.6 239 63.6
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 1.6e-87 326.6 240 66.2
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 1.6e-87 326.6 243 62.1
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 4.6e-87 325.1 243 61.7
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 6.0e-87 324.7 245 62.9
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 7.9e-87 324.3 236 63.6
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 1.0e-86 323.9 237 66.2
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 1.0e-86 323.9 241 63.9
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 1.8e-86 323.2 243 64.2
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 1.8e-86 323.2 242 63.2
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 2.3e-86 322.8 239 64.4
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 3.9e-86 322.0 245 62.4
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 6.7e-86 321.2 245 61.6
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.5e-85 320.1 245 62.0
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 1.5e-85 320.1 257 62.6
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.9e-85 319.7 244 63.5
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 2.5e-85 319.3 242 63.2
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 2.5e-85 319.3 242 63.2
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 3.3e-85 318.9 254 61.4
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 3.3e-85 318.9 241 64.3
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 7.4e-85 317.8 245 61.6
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 7.4e-85 317.8 258 60.9
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 7.4e-85 317.8 244 63.5
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.3e-84 317.0 243 61.7
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 1.3e-84 317.0 236 61.4
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 2.2e-84 316.2 241 63.5
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 4.8e-84 315.1 245 61.2
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 4.8e-84 315.1 254 61.0
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.4e-83 313.5 245 61.2
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 3.1e-83 312.4 216 67.6
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 3.1e-83 312.4 243 61.7
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 4.1e-83 312.0 235 63.0
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 6.9e-83 311.2 242 62.4
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 6.9e-83 311.2 233 63.9
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 9.0e-83 310.8 236 63.6
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 9.0e-83 310.8 236 63.1
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 1.2e-82 310.5 241 64.7
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 1.2e-82 310.5 235 60.9
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 1.5e-82 310.1 242 61.6
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 2.6e-82 309.3 238 63.4
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 2.6e-82 309.3 233 63.5
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 3.4e-82 308.9 236 63.1
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 3.4e-82 308.9 235 63.0
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 4.5e-82 308.5 243 60.1
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 1.0e-81 307.4 241 61.0
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 1.0e-81 307.4 236 63.1
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 1.0e-81 307.4 236 63.1
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 1.7e-81 306.6 236 62.3
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 2.2e-81 306.2 241 62.2
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 5.0e-81 305.1 248 59.3
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 5.0e-81 305.1 248 59.3
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 6.5e-81 304.7 236 62.3
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 1.1e-80 303.9 236 58.9
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.4e-80 303.5 233 62.2
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.4e-80 303.5 236 62.3
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.4e-80 303.5 236 62.3
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 1.9e-80 303.1 240 59.6
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 3.2e-80 302.4 248 59.7
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 4.2e-80 302.0 236 61.9
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 5.5e-80 301.6 238 62.2
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 1.2e-79 300.4 237 60.8
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 1.6e-79 300.1 239 61.1
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 1.6e-79 300.1 240 60.4
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 4.6e-79 298.5 236 61.0
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 1.0e-78 297.4 236 61.0
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 2.3e-78 296.2 238 59.7
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 5.1e-78 295.0 233 61.4
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 8.8e-78 294.3 236 60.6
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 8.8e-78 294.3 236 60.6
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 1.5e-77 293.5 240 59.6
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 1.5e-77 293.5 244 59.4
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 2.5e-77 292.7 235 60.9
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 1.3e-76 290.4 245 59.2
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 2.2e-76 289.7 234 57.7
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 8.2e-76 287.7 206 68.4
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 4.1e-75 285.4 242 58.3
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 6.9e-75 284.6 235 55.7
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 6.9e-75 284.6 235 55.7
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 2.0e-74 283.1 242 57.4
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 4.5e-74 282.0 235 56.6
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 4.5e-74 282.0 217 63.6
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 7.7e-74 281.2 235 54.9
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 1.3e-73 280.4 245 55.9
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 2.2e-73 279.6 243 58.4
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 2.2e-73 279.6 224 63.4
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 6.5e-73 278.1 235 54.9
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 6.5e-73 278.1 206 63.6
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 8.5e-73 277.7 231 55.8
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 1.1e-72 277.3 244 57.0
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 1.4e-72 276.9 237 55.3
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 3.2e-72 275.8 233 57.5
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 4.2e-72 275.4 206 63.6
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 2.7e-71 272.7 235 54.9
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 2.7e-71 272.7 239 55.6
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.4e-70 270.4 244 56.1
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 1.8e-70 270.0 243 57.6
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 3.9e-70 268.9 208 62.0
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 5.1e-70 268.5 233 54.1
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.3e-68 263.8 216 56.5
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 5.3e-67 258.5 230 55.2
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 9.1e-67 257.7 225 54.2
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 7.7e-66 254.6 241 53.9
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 2.2e-65 253.1 198 58.6
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 3.8e-65 252.3 236 53.8
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 5.5e-64 248.4 242 50.8
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 5.5e-64 248.4 256 52.0
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 4.7e-63 245.4 234 52.1
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 7.4e-61 238.0 244 51.2
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 4.1e-59 232.3 223 55.2
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 5.3e-59 231.9 165 62.4
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 6.5e-57 224.9 157 67.5
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 1.5e-56 223.8 241 48.1
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 4.2e-56 222.2 163 62.6
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.2e-55 220.7 243 48.6
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 1.5e-53 213.8 185 58.9
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.2e-52 209.9 163 62.0
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 4.8e-52 208.8 165 60.0
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 2.1e-47 193.4 269 39.4
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 2.1e-47 193.4 208 49.5
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 3.6e-47 192.6 262 40.5
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.4e-43 180.6 200 49.0
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 2.4e-43 179.9 127 64.6
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 5.5e-40 168.7 191 47.1
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 4.0e-38 162.5 116 66.4
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 4.9e-36 155.6 101 69.3
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 1.2e-34 151.0 120 61.7
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 8.6e-33 144.8 128 56.2
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 1.5e-32 144.1 152 49.3
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.0e-29 133.7 107 58.9
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.0e-25 121.3 93 61.3
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 5.0e-25 119.0 171 41.5
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 8.6e-25 118.2 129 50.4
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 1.2e-23 114.4 89 60.7
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 4.7e-23 112.5 88 56.8
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 6.2e-23 112.1 132 46.2
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 1.4e-22 110.9 191 33.0
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 2.9e-20 103.2 74 66.2
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 1.4e-19 100.9 96 51.0
CARHR273910 Cardamine hirsuta HOM05D003786 ORTHO05D004375 7.8e-18 95.1 80 56.2
PRCOL_00003701 Prasinoderma coloniale HOM05D003786 ORTHO05D004375 1.9e-16 90.5 175 28.6
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 1.9e-11 73.9 61 50.8
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 3.0e-09 66.6 175 26.9
Zm00001eb022270 Zea mays HOM05D028996 ORTHO05D004375 5.2e-06 55.8 62 43.5


User provided reference genes

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