Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 2.8e-131 472.2 287 100.0
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 1.4e-98 363.6 238 86.6
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 6.9e-98 361.3 291 78.7
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 4.9e-96 355.1 285 80.4
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 1.1e-95 354.0 291 78.0
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 9.3e-95 350.9 287 78.0
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 5.4e-87 325.1 299 72.9
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 1.2e-86 323.9 292 79.1
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 1.8e-85 320.1 298 72.5
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 3.0e-85 319.3 299 72.2
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 3.0e-85 319.3 292 75.3
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 8.7e-85 317.8 287 76.7
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 1.9e-84 316.6 249 77.5
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 9.6e-84 314.3 290 76.9
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 8.1e-83 311.2 290 73.8
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 2.6e-81 306.2 289 74.4
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 3.4e-81 305.8 289 73.7
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 5.8e-81 305.1 290 74.1
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 7.6e-81 304.7 252 71.4
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 1.3e-80 303.9 200 83.5
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 1.1e-79 300.8 288 73.6
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 1.1e-79 300.8 292 74.7
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 1.9e-79 300.1 294 74.1
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 2.5e-79 299.7 287 73.9
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 3.2e-79 299.3 301 74.8
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 4.2e-79 298.9 292 72.9
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 5.5e-79 298.5 291 71.8
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 9.3e-79 297.7 254 74.4
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 1.2e-78 297.4 305 67.9
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 2.1e-78 296.6 290 71.0
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 2.1e-78 296.6 286 69.2
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 1.0e-77 294.3 292 72.3
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 1.0e-77 294.3 292 72.3
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 1.8e-77 293.5 289 72.3
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 1.8e-77 293.5 292 73.3
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 2.3e-77 293.1 163 92.0
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 3.0e-77 292.7 283 74.6
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 3.9e-77 292.4 186 83.9
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 5.1e-77 292.0 292 72.9
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 6.7e-77 291.6 163 90.2
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 1.5e-76 290.4 287 73.9
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 7.4e-76 288.1 210 79.0
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 1.3e-75 287.3 290 72.4
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 1.3e-75 287.3 197 79.7
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 1.3e-75 287.3 197 79.7
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 1.3e-75 287.3 177 87.6
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 1.6e-75 287.0 197 80.2
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 1.6e-75 287.0 168 88.1
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 1.6e-75 287.0 301 69.4
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 2.1e-75 286.6 235 73.6
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 2.8e-75 286.2 197 78.7
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 3.7e-75 285.8 166 89.2
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 6.2e-75 285.0 238 75.2
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 6.2e-75 285.0 177 86.4
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 8.2e-75 284.6 283 71.7
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 1.8e-74 283.5 254 69.7
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 5.3e-74 282.0 246 74.0
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 5.3e-74 282.0 288 72.9
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 6.9e-74 281.6 203 77.3
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 6.9e-74 281.6 210 75.2
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 6.9e-74 281.6 199 79.9
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 6.9e-74 281.6 203 77.3
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 6.9e-74 281.6 203 77.3
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 1.2e-73 280.8 238 74.4
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 2.6e-73 279.6 153 91.5
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 1.7e-72 276.9 287 70.7
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 1.7e-72 276.9 151 94.0
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 2.2e-72 276.6 292 71.6
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 2.9e-72 276.2 168 85.7
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 3.8e-72 275.8 191 79.1
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 6.5e-72 275.0 191 80.6
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 6.5e-72 275.0 191 80.6
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 8.4e-72 274.6 213 74.2
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.9e-71 273.5 289 63.7
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 3.2e-71 272.7 294 64.3
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 3.2e-71 272.7 272 72.4
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 3.2e-71 272.7 290 69.0
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 7.1e-71 271.6 175 82.3
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 9.3e-71 271.2 237 69.2
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 9.3e-71 271.2 284 69.4
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 1.2e-70 270.8 214 72.4
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 1.2e-70 270.8 175 83.4
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 4.6e-70 268.9 189 78.8
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 4.6e-70 268.9 307 61.6
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 1.3e-69 267.3 163 85.3
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 1.3e-69 267.3 290 69.7
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 1.8e-69 266.9 291 68.4
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 3.0e-69 266.2 152 91.4
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 3.0e-69 266.2 181 81.8
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 5.1e-69 265.4 255 67.8
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 5.1e-69 265.4 255 67.8
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 6.7e-69 265.0 233 68.7
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 6.7e-69 265.0 262 68.7
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 6.7e-69 265.0 196 74.5
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 8.7e-69 264.6 190 77.4
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 1.1e-68 264.2 164 82.9
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 1.9e-68 263.5 291 64.6
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 3.3e-68 262.7 176 79.5
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 7.4e-68 261.5 250 70.0
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 9.7e-68 261.2 254 67.7
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 1.3e-67 260.8 213 75.6
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 2.2e-67 260.0 288 62.5
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 2.2e-67 260.0 295 65.8
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 3.7e-67 259.2 289 63.0
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 3.7e-67 259.2 254 65.0
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 4.8e-67 258.8 302 63.6
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 4.8e-67 258.8 298 65.8
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 6.3e-67 258.5 194 74.7
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 6.3e-67 258.5 293 68.3
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 3.1e-66 256.1 153 86.9
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 3.1e-66 256.1 153 86.9
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 5.3e-66 255.4 151 87.4
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 5.3e-66 255.4 287 66.6
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 1.5e-65 253.8 298 68.5
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 1.5e-65 253.8 270 64.4
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 4.5e-65 252.3 282 68.1
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 2.9e-64 249.6 248 64.5
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 1.4e-63 247.3 153 83.0
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 1.4e-63 247.3 284 65.5
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 1.9e-63 246.9 284 65.5
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 5.5e-63 245.4 193 72.0
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 7.2e-63 245.0 293 66.2
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 2.7e-62 243.0 169 77.5
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 4.6e-62 242.3 290 66.2
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 4.6e-62 242.3 290 66.2
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 4.6e-62 242.3 193 71.0
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 1.0e-61 241.1 293 65.2
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 1.4e-61 240.7 292 65.1
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 3.9e-61 239.2 151 82.8
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 1.1e-60 237.7 144 84.0
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 2.2e-59 233.4 142 85.2
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 8.2e-59 231.5 298 59.4
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 1.8e-58 230.3 184 73.4
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 2.2e-56 223.4 284 64.4
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 2.9e-56 223.0 244 59.8
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 2.5e-55 219.9 164 74.4
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 3.2e-55 219.5 205 67.3
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 3.2e-55 219.5 136 83.1
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 5.5e-55 218.8 249 57.0
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 2.1e-54 216.9 122 88.5
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 2.0e-52 210.3 186 66.1
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 5.7e-52 208.8 152 75.7
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 1.7e-51 207.2 163 70.6
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 1.7e-48 197.2 193 61.1
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 1.1e-47 194.5 160 64.4
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 8.8e-45 184.9 174 62.1
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 4.8e-43 179.1 152 63.8
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 1.1e-42 177.9 124 75.8
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 7.7e-41 171.8 280 55.7
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 1.3e-35 154.5 109 75.2
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 2.2e-35 153.7 94 81.9
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 3.8e-32 142.9 265 53.2
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 3.8e-32 142.9 254 48.4
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 3.8e-32 142.9 254 48.4
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 4.7e-30 136.0 290 45.2
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.0e-29 134.8 252 47.2
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 8.3e-27 125.2 138 51.4
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 9.5e-23 111.7 195 43.6
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 4.3e-15 86.3 82 62.2
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 9.5e-15 85.1 159 47.8
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 1.6e-14 84.3 198 36.9
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 1.0e-13 81.6 50 78.0
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 3.1e-13 80.1 40 97.5
CSS0022278 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 4.6e-09 66.2 62 64.5


User provided reference genes

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