Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG03G012970 Citrullus lanatus HOM05D005600 ORTHO05D006682 0.0e+00 1208.0 629 100.0
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 0.0e+00 1152.9 629 94.8
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 0.0e+00 1151.3 627 95.7
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 0.0e+00 1119.8 629 90.5
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 2.0e-283 978.8 624 77.9
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 9.6e-278 959.9 625 76.6
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 4.7e-277 957.6 625 79.4
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 4.7e-277 957.6 625 79.2
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 1.1e-276 956.4 625 79.0
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 1.1e-276 956.4 630 75.7
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 3.1e-276 954.9 625 78.9
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 3.1e-276 954.9 630 77.5
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 4.0e-276 954.5 624 79.0
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 2.0e-275 952.2 622 79.7
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 2.9e-274 948.3 623 76.7
Cpa.g.sc84.9 Carica papaya HOM05D005600 ORTHO05D006682 6.4e-274 947.2 630 74.8
Manes.06G161000 Manihot esculenta HOM05D005600 ORTHO05D006682 1.1e-273 946.4 624 76.6
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 6.6e-271 937.2 648 76.4
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 1.9e-270 935.6 630 73.3
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 4.3e-270 934.5 630 73.0
MD11G1186900 Malus domestica HOM05D005600 ORTHO05D006682 5.6e-270 934.1 627 73.7
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 2.8e-269 931.8 628 73.6
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 3.6e-269 931.4 628 73.2
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 4.8e-269 931.0 628 73.6
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 6.9e-268 927.2 631 72.7
Hma1.2p1_0151F.1_g067180 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 1.2e-267 926.4 624 73.4
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 2.0e-267 925.6 629 76.6
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 2.2e-266 922.2 626 74.1
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 3.8e-266 921.4 624 73.7
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 6.4e-266 920.6 623 72.9
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 8.4e-266 920.2 623 73.5
Atru.chr10.100 Acer truncatum HOM05D005600 ORTHO05D006682 2.4e-265 918.7 623 73.2
Atru.chr10.118 Acer truncatum HOM05D005600 ORTHO05D006682 2.4e-265 918.7 623 73.2
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 4.2e-265 917.9 656 70.1
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 7.1e-265 917.1 648 70.5
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 7.1e-265 917.1 624 73.2
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 2.1e-264 915.6 624 72.8
Actinidia35417 Actinidia chinensis HOM05D005600 ORTHO05D006682 2.7e-264 915.2 632 72.6
Ca_08130_v3 Cicer arietinum L. HOM05D005600 ORTHO05D006682 1.0e-263 913.3 624 75.0
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 1.7e-263 912.5 630 73.3
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 1.5e-262 909.4 624 76.3
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 1.6e-261 906.0 624 74.4
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 2.1e-261 905.6 624 76.1
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 2.1e-261 905.6 630 71.4
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 4.8e-261 904.4 624 75.2
TWI39G0768 Tripterygium wilfordii HOM05D005600 ORTHO05D006682 8.1e-261 903.7 624 75.8
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 1.8e-260 902.5 593 77.1
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 1.8e-260 902.5 624 72.1
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 2.4e-260 902.1 623 70.8
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 6.9e-260 900.6 624 71.0
Nn3g21398 Nelumbo nucifera HOM05D005600 ORTHO05D006682 5.8e-259 897.5 625 74.1
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 7.6e-259 897.1 627 71.0
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 2.9e-258 895.2 624 71.5
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 4.9e-258 894.4 627 70.8
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 4.9e-258 894.4 622 69.8
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 4.2e-257 891.3 630 69.8
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 4.2e-257 891.3 624 70.8
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 1.2e-256 889.8 629 70.4
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 4.6e-256 887.9 629 70.0
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 7.9e-256 887.1 627 74.3
DCAR_009654 Daucus carota HOM05D005600 ORTHO05D006682 7.4e-254 880.6 639 73.6
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 2.1e-253 879.0 622 70.3
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 5.3e-252 874.4 657 67.6
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 1.0e-250 870.2 637 68.9
Sabra09G0035700 Salix brachista HOM05D005600 ORTHO05D006682 2.2e-250 869.0 751 64.6
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 2.3e-247 859.0 627 72.2
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 1.1e-246 856.7 626 67.4
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 2.5e-246 855.5 628 68.3
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 7.4e-246 854.0 626 66.9
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 1.3e-245 853.2 621 72.0
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 2.4e-244 849.0 629 68.4
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 9.0e-244 847.0 626 68.8
COL.COLO4_36487 Corchorus olitorius HOM05D005600 ORTHO05D006682 3.4e-243 845.1 624 71.2
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 4.5e-243 844.7 681 67.8
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 1.7e-242 842.8 624 65.9
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 1.9e-241 839.3 629 67.6
Lsat_1_v5_gn_7_110720 Lactuca sativa HOM05D005600 ORTHO05D006682 2.1e-240 835.9 627 69.2
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 1.1e-238 830.1 621 65.5
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 1.5e-238 829.7 621 65.9
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 1.9e-238 829.3 621 65.5
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 1.4e-236 823.2 628 67.7
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 1.8e-236 822.8 621 64.9
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 3.1e-236 822.0 621 64.6
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 6.9e-236 820.8 624 67.3
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 2.6e-235 818.9 621 65.2
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 3.4e-235 818.5 621 64.9
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 3.4e-235 818.5 621 64.9
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 7.7e-235 817.4 621 64.7
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 2.9e-234 815.5 621 64.7
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 4.2e-233 811.6 632 63.9
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 3.0e-231 805.4 668 61.1
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 3.9e-231 805.1 626 67.1
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 1.1e-228 797.0 642 62.0
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 6.5e-226 787.7 621 63.1
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 6.1e-224 781.2 715 59.3
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 5.2e-223 778.1 624 61.5
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 2.2e-213 746.1 546 70.0
HPP92_006936 Vanilla planifolia HOM05D005600 ORTHO05D006682 2.5e-209 732.6 563 66.3
Lj2A14G43 Lonicera japonica HOM05D005600 ORTHO05D006682 5.4e-204 714.9 586 64.5
Eucgr.B03713 Eucalyptus grandis HOM05D005600 ORTHO05D006682 5.0e-202 708.4 495 70.9
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 9.8e-198 694.1 654 57.3
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 8.6e-186 654.4 634 51.9
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 7.0e-180 634.8 628 51.0
Nitab4.5_0008957g0040 Nicotiana tabacum HOM05D005600 ORTHO05D006682 1.5e-177 627.1 488 66.2
CDE01G0031 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 1.4e-172 610.5 645 55.3
Zm00001eb016670 Zea mays HOM05D005600 ORTHO05D006682 7.8e-171 604.7 501 59.5
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 1.0e-170 604.4 638 49.4
VMungo1383G0719 Vigna mungo HOM05D005600 ORTHO05D006682 2.0e-166 590.1 443 66.1
SMO236G0107 Selaginella moellendorffii HOM05D005600 ORTHO05D006682 1.1e-145 521.2 635 42.2
CBR_g4015 Chara braunii HOM05D005600 ORTHO05D006682 8.4e-141 505.0 717 43.5
SEGI_34765 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.4e-124 451.1 378 60.1
BcaC04g23081 Brassica carinata HOM05D005600 ORTHO05D006682 6.5e-109 399.1 354 57.6
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 2.3e-98 364.0 491 44.2
CDE10G0769 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 1.8e-82 311.2 168 86.9
SHI27472 Sapria himalayana HOM05D005600 ORTHO05D006682 4.1e-79 300.1 243 60.5
BolC9t54127H Brassica oleracea HOM05D005600 ORTHO05D006682 4.3e-76 290.0 387 45.0
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 1.1e-66 258.8 143 83.9
PRCOL_00004432 Prasinoderma coloniale HOM05D005600 ORTHO05D006682 4.1e-55 220.3 331 34.7
Eucgr.B03714 Eucalyptus grandis HOM05D005600 ORTHO05D006682 1.0e-37 162.5 89 83.1
MCO11G503 Micromonas commoda HOM05D005600 ORTHO05D006682 1.3e-37 162.2 328 31.1
Lj2A14T50 Lonicera japonica HOM05D005600 ORTHO05D006682 3.5e-30 137.5 126 56.3
SEGI_12823 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.1e-28 132.5 91 63.7
Cfa024653 Carpinus fangiana HOM05D005600 ORTHO05D006682 5.8e-25 120.2 322 24.8
MBI19_g44409_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 7.9e-22 109.8 115 55.7
Cre12.g524100 Chlamydomonas reinhardtii HOM05D005600 ORTHO05D006682 1.3e-19 102.4 259 31.3
A09p10400 Brassica napus HOM05D005600 ORTHO05D006682 1.3e-16 92.4 84 52.4
VMungo1383G0187 Vigna mungo HOM05D005600 ORTHO05D006682 4.9e-16 90.5 42 90.5
SEGI_14354 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 8.4e-16 89.7 133 41.4
Hund17892 Selenicereus undatus HOM05D026955 ORTHO05D006682 2.1e-06 58.5 28 89.3
MBI19_g44872_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 3.6e-06 57.8 84 45.2


User provided reference genes

Program Settings