Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 3.0e-139 498.4 240 100.0
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 5.5e-125 451.1 240 88.8
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 6.3e-113 411.0 241 81.7
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 1.7e-102 376.3 205 86.8
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 3.0e-99 365.5 235 73.6
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 3.0e-99 365.5 235 73.6
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 5.7e-98 361.3 235 72.8
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 2.8e-97 359.0 235 71.9
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 3.7e-97 358.6 236 72.9
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 8.3e-97 357.5 233 73.4
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 2.4e-96 355.9 238 72.3
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 2.4e-96 355.9 238 72.3
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 7.0e-96 354.4 235 72.3
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 7.8e-95 350.9 239 68.2
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 8.6e-94 347.4 235 70.6
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 2.8e-92 342.4 234 68.4
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 4.7e-92 341.7 235 69.8
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 4.7e-92 341.7 235 69.4
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 1.0e-91 340.5 235 68.9
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.2e-90 337.0 234 69.2
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 2.0e-90 336.3 236 69.1
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 2.6e-90 335.9 235 68.1
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 4.4e-90 335.1 240 67.5
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 7.5e-90 334.3 235 68.5
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 7.5e-90 334.3 239 66.5
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 9.8e-90 334.0 235 68.5
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 1.3e-89 333.6 238 66.8
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.7e-89 333.2 236 69.5
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 3.7e-89 332.0 238 66.8
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 4.9e-89 331.6 238 67.2
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 1.1e-88 330.5 235 64.7
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 1.1e-88 330.5 235 67.7
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 1.2e-87 327.0 234 67.1
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.2e-87 327.0 238 66.0
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 2.7e-87 325.9 236 66.5
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 2.7e-87 325.9 239 65.7
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 3.5e-87 325.5 235 66.8
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 4.6e-87 325.1 240 66.2
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 7.8e-87 324.3 239 64.9
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 1.0e-86 323.9 235 67.2
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 1.0e-86 323.9 235 65.5
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 3.9e-86 322.0 239 66.1
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 3.9e-86 322.0 239 66.1
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 8.6e-86 320.9 235 65.5
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 1.9e-85 319.7 235 64.3
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 2.5e-85 319.3 239 63.6
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 3.3e-85 318.9 238 64.3
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 4.3e-85 318.5 235 64.7
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 9.5e-85 317.4 235 64.7
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 2.8e-84 315.8 234 64.5
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 3.6e-84 315.5 235 64.3
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 4.7e-84 315.1 235 64.3
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 6.2e-84 314.7 239 63.6
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 2.3e-83 312.8 239 61.9
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 3.1e-83 312.4 239 63.6
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 4.0e-83 312.0 235 63.8
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 4.0e-83 312.0 234 65.0
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 5.2e-83 311.6 234 63.7
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 8.9e-83 310.8 239 62.8
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 2.6e-82 309.3 239 61.9
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 3.4e-82 308.9 217 69.1
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 5.8e-82 308.1 239 62.3
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 6.4e-81 304.7 239 62.8
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 6.4e-81 304.7 234 63.7
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 8.3e-81 304.3 239 62.8
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 8.3e-81 304.3 239 61.5
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 8.3e-81 304.3 252 59.9
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.4e-80 303.5 239 61.5
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 1.9e-80 303.1 254 59.4
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 3.2e-80 302.4 239 61.1
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 7.0e-80 301.2 239 61.1
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 1.6e-79 300.1 242 60.7
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 2.0e-79 299.7 235 62.6
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 2.3e-78 296.2 249 59.8
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 2.3e-78 296.2 240 62.5
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 8.6e-78 294.3 241 60.6
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 1.5e-77 293.5 237 62.4
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 3.3e-77 292.4 235 62.1
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 3.3e-77 292.4 241 61.0
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 4.3e-77 292.0 236 60.2
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 4.3e-77 292.0 233 60.1
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 5.6e-77 291.6 242 60.7
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 5.6e-77 291.6 235 58.7
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 1.2e-76 290.4 242 61.6
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 1.2e-76 290.4 241 59.3
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 1.4e-75 287.0 216 64.8
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 2.3e-75 286.2 234 59.4
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.3e-75 286.2 238 58.8
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.3e-75 286.2 238 58.8
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 3.1e-75 285.8 236 57.2
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 5.2e-75 285.0 242 58.7
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 5.2e-75 285.0 242 58.7
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 6.8e-75 284.6 239 56.1
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 1.5e-74 283.5 241 58.5
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 3.4e-74 282.3 225 63.1
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 5.8e-74 281.6 239 58.2
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 5.8e-74 281.6 243 58.0
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 1.7e-73 280.0 234 59.8
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 2.9e-73 279.3 240 57.5
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 2.9e-73 279.3 240 57.1
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 4.9e-73 278.5 241 57.3
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 4.9e-73 278.5 241 57.3
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 6.4e-73 278.1 238 57.1
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.4e-72 276.9 239 59.8
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.9e-72 276.6 238 57.1
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 4.1e-72 275.4 234 59.4
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 4.1e-72 275.4 238 57.1
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 9.2e-72 274.2 239 56.5
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 1.2e-71 273.9 235 58.7
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 3.5e-71 272.3 242 56.2
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 7.8e-71 271.2 234 56.8
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 8.6e-70 267.7 235 56.6
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 1.1e-69 267.3 237 55.7
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.5e-69 266.9 234 59.8
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 1.5e-69 266.9 235 60.0
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 5.6e-69 265.0 246 54.9
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 9.5e-69 264.2 204 63.7
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 1.6e-68 263.5 237 55.3
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 2.8e-68 262.7 231 56.3
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 3.6e-68 262.3 241 53.5
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 6.2e-68 261.5 237 54.4
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 8.1e-68 261.2 238 54.2
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 8.1e-68 261.2 217 58.5
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.4e-67 260.4 204 63.2
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 3.1e-67 259.2 228 57.9
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 4.0e-67 258.8 243 54.3
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 4.0e-67 258.8 237 54.4
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 8.9e-67 257.7 234 54.3
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 2.0e-66 256.5 237 53.6
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 2.0e-66 256.5 238 56.7
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 2.0e-66 256.5 235 56.6
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 2.6e-66 256.1 235 54.0
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 3.4e-66 255.8 242 53.3
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 3.4e-66 255.8 237 52.7
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 4.4e-66 255.4 237 53.6
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 1.3e-65 253.8 242 51.2
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 2.9e-65 252.7 237 53.6
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 2.9e-65 252.7 237 53.6
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 4.9e-65 251.9 238 53.4
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 4.9e-65 251.9 260 51.2
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 8.4e-65 251.1 237 52.7
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 8.4e-65 251.1 237 52.7
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 8.6e-62 241.1 232 50.9
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 3.3e-61 239.2 243 51.9
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 7.3e-61 238.0 240 48.8
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 9.6e-61 237.7 224 55.4
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 6.4e-57 224.9 163 64.4
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 1.4e-56 223.8 244 47.1
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 1.6e-55 220.3 183 56.3
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 2.7e-55 219.5 209 51.2
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 6.0e-55 218.4 231 48.5
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 2.3e-54 216.5 161 63.4
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 5.6e-53 211.8 185 58.4
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 7.3e-53 211.5 160 63.1
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 4.8e-52 208.8 158 65.2
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 2.0e-50 203.4 237 45.6
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.8e-49 199.1 239 47.7
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 1.9e-45 186.8 163 54.0
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 4.3e-45 185.7 260 40.4
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.8e-44 183.0 201 51.2
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 4.8e-44 182.2 263 38.8
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 1.9e-40 170.2 127 63.0
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 1.9e-40 170.2 208 46.2
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.1e-35 152.9 192 45.3
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 5.3e-35 152.1 116 62.1
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 5.3e-35 152.1 102 69.6
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 5.7e-29 132.1 121 55.4
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 9.7e-29 131.3 107 58.9
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 2.8e-28 129.8 117 56.4
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 4.8e-28 129.0 135 50.4
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 6.3e-28 128.6 144 45.8
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 7.6e-26 121.7 164 42.1
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 2.9e-25 119.8 93 63.4
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 1.7e-20 104.0 88 50.0
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 3.7e-20 102.8 188 31.9
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 8.2e-20 101.7 73 64.4
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 1.4e-19 100.9 89 55.1
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 2.9e-17 93.2 132 39.4
CARHR273910 Cardamine hirsuta HOM05D003786 ORTHO05D004375 2.7e-15 86.7 80 51.2
PRCOL_00003701 Prasinoderma coloniale HOM05D003786 ORTHO05D004375 1.8e-14 84.0 170 28.8
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 1.1e-13 81.3 98 43.9
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 2.2e-09 67.0 62 53.2
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 5.0e-09 65.9 170 27.1
Cfa023727 Carpinus fangiana HOM05D003786 ORTHO05D004375 2.1e-07 60.5 185 25.4
Zm00001eb030490 Zea mays HOM05D028996 ORTHO05D004375 3.0e-06 56.6 63 41.3
Zm00001eb022270 Zea mays HOM05D028996 ORTHO05D004375 3.9e-06 56.2 65 40.0


User provided reference genes

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