Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 7.3e-141 503.8 244 100.0
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 6.6e-110 401.0 244 77.9
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 6.4e-105 384.4 243 72.4
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 7.1e-104 380.9 244 72.1
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 7.1e-104 380.9 241 73.0
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 9.3e-104 380.6 244 72.5
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 1.6e-103 379.8 240 72.9
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 6.0e-103 377.9 244 73.0
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 1.1e-101 373.6 240 71.2
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 3.3e-101 372.1 244 70.5
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 5.6e-101 371.3 235 74.0
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 5.6e-101 371.3 245 71.4
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 9.6e-101 370.5 244 72.1
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 1.3e-100 370.2 241 72.6
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 4.8e-100 368.2 244 71.3
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 6.2e-100 367.9 241 68.5
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 1.1e-99 367.1 243 71.2
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 1.4e-99 366.7 234 73.9
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 4.5e-98 361.7 245 71.0
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 5.8e-98 361.3 245 68.2
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 2.2e-97 359.4 238 70.2
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 6.4e-97 357.8 243 70.0
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 1.9e-96 356.3 238 70.6
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 2.4e-96 355.9 238 69.7
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 2.4e-96 355.9 238 68.9
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 4.2e-96 355.1 243 66.7
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 4.2e-96 355.1 243 68.3
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 1.2e-95 353.6 241 68.9
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 1.2e-95 353.6 243 69.5
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.2e-95 353.6 243 66.7
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 1.6e-95 353.2 238 68.5
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 2.7e-95 352.4 244 66.8
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 2.7e-95 352.4 243 66.7
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.0e-94 350.5 243 65.8
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 1.3e-94 350.1 237 67.5
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 3.9e-94 348.6 239 68.2
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 6.7e-94 347.8 237 67.1
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 1.3e-92 343.6 239 67.8
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 4.0e-91 338.6 237 64.1
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 1.2e-90 337.0 242 66.1
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 1.3e-89 333.6 238 66.4
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.2e-89 332.8 233 65.7
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 2.9e-89 332.4 243 65.0
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 8.4e-89 330.9 242 64.9
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 9.3e-88 327.4 246 63.8
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 1.2e-87 327.0 238 61.8
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 1.6e-87 326.6 240 65.8
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 2.1e-87 326.2 245 63.7
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 2.1e-87 326.2 233 64.8
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 3.5e-87 325.5 235 64.7
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 3.5e-87 325.5 235 64.7
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 7.9e-87 324.3 236 64.0
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 7.9e-87 324.3 233 64.4
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.3e-86 323.6 245 63.3
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 1.3e-86 323.6 238 63.9
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 1.3e-86 323.6 240 65.8
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.8e-86 323.2 233 63.9
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 2.3e-86 322.8 233 63.5
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 2.3e-86 322.8 235 63.8
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 5.1e-86 321.6 241 65.1
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 6.7e-86 321.2 245 62.0
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 6.7e-86 321.2 249 62.7
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 8.7e-86 320.9 237 65.8
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.5e-85 320.1 245 62.4
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 4.3e-85 318.5 242 64.0
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 4.3e-85 318.5 242 64.0
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 4.3e-85 318.5 243 60.1
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 5.7e-85 318.2 243 60.5
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 5.7e-85 318.2 245 62.4
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 5.7e-85 318.2 245 62.0
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 5.7e-85 318.2 245 62.4
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 5.7e-85 318.2 243 63.8
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 5.7e-85 318.2 241 65.6
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 7.4e-85 317.8 238 62.6
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 7.4e-85 317.8 257 61.9
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 1.3e-84 317.0 244 61.5
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 2.2e-84 316.2 249 62.2
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 2.2e-84 316.2 219 67.6
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 3.7e-84 315.5 242 63.2
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 4.8e-84 315.1 234 64.1
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 1.4e-83 313.5 241 62.7
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 4.1e-83 312.0 241 62.2
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 5.3e-83 311.6 241 63.1
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 9.0e-83 310.8 233 60.9
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 1.5e-82 310.1 259 59.5
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 4.5e-82 308.5 242 60.3
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 7.6e-82 307.8 242 62.0
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 1.3e-81 307.0 248 60.9
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.1e-80 303.9 235 61.7
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 1.9e-80 303.1 228 61.4
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 7.2e-80 301.2 240 60.4
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 1.6e-79 300.1 245 60.8
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.7e-79 299.3 216 63.9
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 4.6e-79 298.5 240 59.6
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 4.6e-79 298.5 232 58.6
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 7.9e-79 297.7 233 59.7
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 7.9e-79 297.7 233 59.7
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 1.0e-78 297.4 240 60.8
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.0e-78 297.4 240 60.8
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 1.4e-78 297.0 233 60.1
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 2.3e-78 296.2 240 58.8
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 1.5e-77 293.5 233 57.9
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.9e-77 293.1 233 58.8
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 2.5e-77 292.7 239 58.6
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 4.3e-77 292.0 246 56.1
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 2.2e-76 289.7 239 58.2
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 2.8e-76 289.3 242 57.9
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 3.7e-76 288.9 234 60.3
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 1.1e-75 287.3 233 58.8
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 1.4e-75 287.0 236 59.7
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 1.8e-75 286.6 239 57.7
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.4e-75 286.2 203 63.5
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 3.1e-75 285.8 239 58.2
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 3.1e-75 285.8 205 66.3
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 3.1e-75 285.8 240 58.3
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 5.3e-75 285.0 239 57.3
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 1.2e-74 283.9 239 58.2
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 2.0e-74 283.1 241 56.4
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 2.0e-74 283.1 241 56.4
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 2.0e-74 283.1 234 56.8
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 2.6e-74 282.7 240 56.2
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 3.4e-74 282.3 244 59.4
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 7.7e-74 281.2 239 57.3
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 1.0e-73 280.8 235 58.3
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 2.2e-73 279.6 234 59.0
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 2.9e-73 279.3 238 57.1
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.8e-73 278.9 203 63.1
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.8e-73 278.9 243 55.6
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 5.0e-73 278.5 236 57.2
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 6.5e-73 278.1 233 56.7
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 8.5e-73 277.7 234 57.7
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 5.5e-72 275.0 236 56.4
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 9.4e-72 274.2 239 55.6
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 9.4e-72 274.2 239 55.6
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 4.7e-71 271.9 224 59.4
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 6.1e-71 271.6 237 57.4
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 1.4e-70 270.4 247 55.1
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.5e-69 266.9 216 57.9
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 6.3e-68 261.5 231 52.8
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 1.2e-66 257.3 240 52.5
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 1.5e-66 256.9 235 54.9
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 2.0e-66 256.5 224 57.1
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 2.6e-66 256.1 165 70.9
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 4.5e-66 255.4 241 53.9
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 4.5e-66 255.4 191 61.8
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 1.3e-65 253.8 233 54.9
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 6.5e-65 251.5 258 51.6
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 4.2e-64 248.8 211 56.9
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 1.1e-61 240.7 230 53.5
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 1.4e-59 233.8 223 54.3
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 1.8e-59 233.4 240 49.6
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 6.5e-57 224.9 157 68.2
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 1.9e-56 223.4 185 62.2
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 2.5e-56 223.0 239 47.7
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 7.2e-56 221.5 163 61.3
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 9.4e-56 221.1 155 65.2
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 4.0e-54 215.7 243 47.3
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 5.9e-50 201.8 163 56.4
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 3.8e-49 199.1 264 42.0
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 2.5e-48 196.4 208 50.5
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 2.3e-46 189.9 262 38.9
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 7.5e-45 184.9 200 48.5
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 9.8e-45 184.5 126 68.3
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 5.0e-41 172.2 191 46.6
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 7.5e-37 158.3 116 63.8
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 8.3e-36 154.8 101 71.3
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 4.1e-35 152.5 149 52.3
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 2.9e-33 146.4 156 50.0
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 5.0e-33 145.6 120 61.7
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.6e-31 139.4 107 57.9
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 7.0e-27 125.2 118 50.8
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 8.6e-25 118.2 93 58.1
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 3.3e-24 116.3 88 56.8
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 1.1e-22 111.3 166 38.6
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 6.8e-22 108.6 143 44.8
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 1.2e-21 107.8 190 32.6
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 4.4e-21 105.9 74 67.6
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 1.6e-18 97.4 89 52.8
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 7.8e-18 95.1 83 53.0
PRCOL_00003701 Prasinoderma coloniale HOM05D003786 ORTHO05D004375 2.1e-15 87.0 168 31.0
CARHR273910 Cardamine hirsuta HOM05D003786 ORTHO05D004375 2.8e-15 86.7 80 51.2
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 7.1e-11 72.0 61 54.1
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 1.5e-08 64.3 97 34.0
Zm00001eb022270 Zea mays HOM05D028996 ORTHO05D004375 4.0e-06 56.2 60 45.0


User provided reference genes

Program Settings