Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 7.3e-141 503.8 244 100.0
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 9.6e-117 423.7 243 84.8
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 8.1e-116 420.6 243 84.4
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 2.4e-115 419.1 243 82.7
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 1.1e-101 373.6 244 73.8
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 4.9e-97 358.2 238 69.7
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 1.2e-95 353.6 239 71.1
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 2.7e-95 352.4 244 68.9
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 1.3e-94 350.1 242 67.8
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 1.8e-94 349.7 244 70.1
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 6.7e-94 347.8 244 68.4
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 8.7e-94 347.4 239 69.5
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 3.3e-93 345.5 243 67.9
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 7.4e-93 344.4 244 66.0
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 4.0e-91 338.6 241 68.9
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 2.0e-90 336.3 238 69.7
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 3.4e-90 335.5 244 68.0
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 1.0e-89 334.0 238 65.5
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 3.8e-89 332.0 238 66.4
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 8.4e-89 330.9 234 67.9
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 1.1e-88 330.5 238 66.0
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 1.1e-88 330.5 243 66.7
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 1.4e-88 330.1 239 68.2
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 2.5e-88 329.3 245 64.1
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 5.5e-88 328.2 237 66.7
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 7.1e-88 327.8 234 64.5
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 7.1e-88 327.8 235 66.8
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 9.3e-88 327.4 243 63.8
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 9.3e-88 327.4 242 64.9
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 9.3e-88 327.4 240 66.2
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 1.6e-87 326.6 246 64.6
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 2.1e-87 326.2 236 66.5
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 6.0e-87 324.7 239 65.7
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 7.9e-87 324.3 245 66.1
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 1.0e-86 323.9 244 63.9
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 3.9e-86 322.0 239 65.3
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 5.1e-86 321.6 243 63.8
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 6.7e-86 321.2 242 64.0
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 1.5e-85 320.1 243 62.6
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.9e-85 319.7 239 64.0
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 2.5e-85 319.3 234 64.1
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 2.5e-85 319.3 234 64.1
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 3.3e-85 318.9 240 67.5
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 4.3e-85 318.5 239 64.9
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 5.7e-85 318.2 241 68.5
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 9.7e-85 317.4 242 64.9
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 9.7e-85 317.4 242 64.9
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 2.2e-84 316.2 236 64.0
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.2e-84 316.2 239 64.0
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 2.2e-84 316.2 237 67.5
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 2.8e-84 315.8 242 65.7
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 4.8e-84 315.1 239 64.0
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 4.8e-84 315.1 244 63.9
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 8.2e-84 314.3 243 62.6
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 2.4e-83 312.8 246 64.2
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 3.1e-83 312.4 239 63.6
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 4.1e-83 312.0 242 60.7
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 9.0e-83 310.8 246 64.2
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 1.2e-82 310.5 238 65.1
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 2.0e-82 309.7 236 61.9
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 2.6e-82 309.3 241 61.4
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 4.5e-82 308.5 249 63.5
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 5.0e-81 305.1 241 63.1
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 2.5e-80 302.8 215 68.4
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 4.2e-80 302.0 233 62.2
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 7.2e-80 301.2 240 62.9
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 7.2e-80 301.2 243 62.6
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 1.2e-79 300.4 233 61.8
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 1.6e-79 300.1 257 60.3
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 1.6e-79 300.1 233 62.2
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.1e-79 299.7 244 59.4
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 2.7e-79 299.3 233 61.8
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 3.6e-79 298.9 245 61.2
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 6.1e-79 298.1 244 59.0
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 6.1e-79 298.1 248 59.3
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 6.1e-79 298.1 248 59.3
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 7.9e-79 297.7 243 60.5
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 1.0e-78 297.4 238 60.1
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 1.5e-77 293.5 237 61.6
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.9e-77 293.1 233 60.9
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 2.5e-77 292.7 234 61.5
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 2.5e-77 292.7 234 61.5
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 4.3e-77 292.0 234 59.8
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 4.3e-77 292.0 233 60.9
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 5.7e-77 291.6 240 62.9
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 5.7e-77 291.6 234 61.1
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 1.3e-76 290.4 242 61.2
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 1.7e-76 290.0 237 60.3
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 8.2e-76 287.7 258 57.8
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 1.1e-75 287.3 238 59.2
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 2.4e-75 286.2 239 56.5
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 4.5e-74 282.0 244 57.8
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 3.8e-73 278.9 216 63.4
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 6.5e-73 278.1 234 58.5
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 1.1e-72 277.3 245 57.6
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 1.9e-72 276.6 232 57.8
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 1.9e-72 276.6 233 59.7
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 2.5e-72 276.2 237 57.4
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 7.2e-72 274.6 234 58.1
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 9.4e-72 274.2 244 57.8
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.6e-71 273.5 236 58.5
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.6e-71 273.5 236 58.5
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 2.1e-71 273.1 205 64.4
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 2.7e-71 272.7 233 57.9
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 4.7e-71 271.9 235 59.1
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 6.1e-71 271.6 233 57.5
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 6.1e-71 271.6 236 57.6
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 1.4e-70 270.4 237 57.0
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 1.8e-70 270.0 236 58.1
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 2.3e-70 269.6 236 58.1
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 3.0e-70 269.2 236 57.2
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.0e-70 269.2 205 63.4
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 8.8e-70 267.7 236 56.8
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 1.1e-69 267.3 237 55.7
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 2.0e-69 266.5 236 57.6
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 2.0e-69 266.5 236 57.2
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 5.7e-69 265.0 244 54.9
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 9.7e-69 264.2 236 57.2
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 2.2e-68 263.1 237 56.1
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 4.8e-68 261.9 241 53.1
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 8.2e-68 261.2 236 56.4
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 1.8e-67 260.0 236 55.9
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 1.8e-67 260.0 236 55.9
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 2.4e-67 259.6 236 56.4
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 2.4e-67 259.6 231 57.6
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 3.1e-67 259.2 221 59.3
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 5.3e-67 258.5 205 61.5
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 7.0e-67 258.1 236 54.2
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 7.0e-67 258.1 236 56.4
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 7.0e-67 258.1 234 55.6
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 7.0e-67 258.1 191 62.8
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 9.1e-67 257.7 233 54.9
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 4.5e-66 255.4 224 58.0
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 1.7e-65 253.4 234 56.8
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 2.2e-65 253.1 236 55.5
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 2.2e-65 253.1 236 55.5
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 3.8e-65 252.3 237 56.1
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 6.5e-65 251.5 231 54.5
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 8.5e-65 251.1 244 52.0
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.1e-64 250.8 216 58.3
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 1.4e-64 250.4 251 49.8
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 4.2e-64 248.8 228 56.1
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 1.0e-62 244.2 233 52.4
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 6.3e-60 235.0 239 51.0
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 4.1e-59 232.3 180 62.2
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 3.5e-58 229.2 230 53.5
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 5.9e-58 228.4 208 54.8
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 1.3e-57 227.3 233 51.9
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 2.2e-57 226.5 157 68.8
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 1.9e-56 223.4 223 52.0
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 9.4e-56 221.1 185 61.6
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 5.2e-54 215.3 239 47.3
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 6.3e-52 208.4 256 45.7
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 8.2e-52 208.0 236 47.0
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 1.0e-49 201.1 163 58.9
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.0e-49 201.1 244 46.3
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.7e-49 200.3 163 57.7
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 6.5e-49 198.4 208 51.9
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.5e-48 196.4 155 61.3
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 5.4e-43 178.7 259 38.6
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 2.7e-42 176.4 258 39.1
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.7e-41 173.7 200 49.0
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 8.0e-39 164.9 126 62.7
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.0e-37 160.2 191 46.1
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 2.2e-36 156.8 116 66.4
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 9.2e-35 151.4 98 72.4
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 3.3e-32 142.9 156 50.6
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 2.3e-30 136.7 152 47.4
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 5.8e-29 132.1 120 59.2
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.4e-27 126.7 107 57.0
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 8.6e-25 118.2 92 59.8
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 5.6e-24 115.5 117 50.4
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 3.1e-22 109.8 193 33.7
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 3.1e-22 109.8 74 68.9
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 6.8e-22 108.6 82 59.8
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 3.2e-19 99.8 89 57.3
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 3.2e-19 99.8 137 44.5
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 7.0e-19 98.6 190 33.7
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 1.6e-15 87.4 83 51.8
CARHR273910 Cardamine hirsuta HOM05D003786 ORTHO05D004375 4.7e-15 85.9 80 53.8
PRCOL_00003701 Prasinoderma coloniale HOM05D003786 ORTHO05D004375 1.8e-14 84.0 100 38.0
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 1.9e-11 73.9 312 24.4
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 2.1e-10 70.5 50 58.0


User provided reference genes

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