Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 0.0e+00 1672.9 865 100.0
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 0.0e+00 1518.8 860 90.6
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 0.0e+00 1509.6 886 88.0
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 0.0e+00 1485.7 864 86.9
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 0.0e+00 1423.7 864 81.4
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 0.0e+00 1396.7 866 79.0
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 0.0e+00 1391.7 864 83.0
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 0.0e+00 1388.6 865 82.5
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1386.7 865 82.5
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 0.0e+00 1384.4 864 81.2
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1381.7 865 82.3
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1377.1 862 78.5
Atru.chr10.100 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1372.1 862 78.1
Atru.chr10.118 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1372.1 862 78.1
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1371.3 861 78.4
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 0.0e+00 1366.3 861 77.9
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 0.0e+00 1362.4 871 77.6
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 0.0e+00 1360.1 864 81.0
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1358.6 864 78.0
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 0.0e+00 1358.6 864 77.2
Manes.06G161000 Manihot esculenta HOM05D005600 ORTHO05D006682 0.0e+00 1357.8 864 79.2
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1357.4 879 76.7
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1357.0 864 77.5
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 0.0e+00 1351.7 862 77.0
TWI39G0768 Tripterygium wilfordii HOM05D005600 ORTHO05D006682 0.0e+00 1345.9 861 80.4
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1343.9 861 77.2
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 0.0e+00 1343.2 867 79.8
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1342.4 895 75.0
Cpa.g.sc84.9 Carica papaya HOM05D005600 ORTHO05D006682 0.0e+00 1336.2 864 77.2
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 0.0e+00 1331.2 864 76.5
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 0.0e+00 1330.5 866 75.3
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 0.0e+00 1330.1 866 77.3
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1329.7 864 75.8
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1326.2 865 76.5
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1320.4 864 76.4
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1320.1 860 75.9
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 0.0e+00 1317.8 853 78.8
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 0.0e+00 1316.2 864 78.4
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 0.0e+00 1314.3 863 75.3
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 0.0e+00 1313.9 866 77.6
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1313.9 865 77.2
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1312.7 864 79.3
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1312.4 864 79.5
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 0.0e+00 1309.7 864 74.5
Actinidia35417 Actinidia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1308.1 866 75.4
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 0.0e+00 1307.0 866 77.7
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 0.0e+00 1305.8 863 74.2
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 0.0e+00 1304.7 863 74.0
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 0.0e+00 1304.3 863 75.6
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1301.6 838 77.7
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 0.0e+00 1301.2 864 74.5
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 0.0e+00 1300.0 864 73.3
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1284.6 864 74.1
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1281.2 864 73.6
Nn3g21398 Nelumbo nucifera HOM05D005600 ORTHO05D006682 0.0e+00 1280.4 864 76.5
DCAR_009654 Daucus carota HOM05D005600 ORTHO05D006682 0.0e+00 1274.2 879 75.2
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 0.0e+00 1261.5 861 70.8
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 0.0e+00 1259.2 930 68.6
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 0.0e+00 1248.4 863 72.0
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 0.0e+00 1243.8 861 72.8
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 0.0e+00 1241.1 919 71.9
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 0.0e+00 1236.1 1008 63.9
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 0.0e+00 1234.2 865 74.2
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 0.0e+00 1232.2 863 70.8
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 0.0e+00 1229.9 863 70.2
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 0.0e+00 1227.6 860 72.4
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 0.0e+00 1226.1 864 71.1
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1218.8 862 69.3
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1218.8 862 69.3
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1207.6 864 68.3
Lsat_1_v5_gn_7_110720 Lactuca sativa HOM05D005600 ORTHO05D006682 0.0e+00 1202.2 864 70.7
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 0.0e+00 1198.7 874 69.1
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1184.9 866 66.9
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 0.0e+00 1184.1 866 66.5
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 0.0e+00 1182.5 949 65.3
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 0.0e+00 1174.1 866 66.3
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 0.0e+00 1173.7 866 66.1
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 0.0e+00 1171.8 863 69.4
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1169.1 791 74.8
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1167.9 861 66.6
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1167.9 866 66.1
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 0.0e+00 1166.4 866 65.9
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1164.8 866 65.9
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 0.0e+00 1164.8 866 65.7
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 0.0e+00 1164.1 866 65.8
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1159.4 884 68.3
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 0.0e+00 1150.6 870 64.7
Sabra09G0035700 Salix brachista HOM05D005600 ORTHO05D006682 0.0e+00 1148.7 941 67.9
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 0.0e+00 1148.3 913 62.7
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 0.0e+00 1134.4 866 64.1
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 0.0e+00 1134.4 875 64.7
COL.COLO4_36487 Corchorus olitorius HOM05D005600 ORTHO05D006682 0.0e+00 1097.8 753 76.1
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 0.0e+00 1095.9 865 62.5
Ca_08130_v3 Cicer arietinum L. HOM05D005600 ORTHO05D006682 0.0e+00 1090.1 792 73.0
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 0.0e+00 1082.8 891 63.1
Hma1.2p1_0151F.1_g067180 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 3.4e-310 1068.1 696 75.6
MD11G1186900 Malus domestica HOM05D005600 ORTHO05D006682 1.3e-293 1013.1 646 77.2
ClCG03G012970 Citrullus lanatus HOM05D005600 ORTHO05D006682 5.5e-276 954.5 625 79.0
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 6.3e-272 941.0 877 52.7
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 7.0e-271 937.6 878 53.1
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 1.0e-269 933.7 874 54.3
SMO236G0107 Selaginella moellendorffii HOM05D005600 ORTHO05D006682 5.1e-229 798.5 872 46.0
CDE01G0031 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 2.5e-228 796.2 884 52.7
Lj2A14G43 Lonicera japonica HOM05D005600 ORTHO05D006682 9.6e-212 741.1 585 66.2
Eucgr.B03713 Eucalyptus grandis HOM05D005600 ORTHO05D006682 4.8e-211 738.8 495 74.9
HPP92_006936 Vanilla planifolia HOM05D005600 ORTHO05D006682 1.6e-206 723.8 556 64.9
CBR_g4015 Chara braunii HOM05D005600 ORTHO05D006682 4.0e-202 709.1 958 43.7
Nitab4.5_0008957g0040 Nicotiana tabacum HOM05D005600 ORTHO05D006682 7.4e-188 661.8 486 67.9
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 2.9e-184 649.8 381 80.8
SHI27472 Sapria himalayana HOM05D005600 ORTHO05D006682 1.2e-177 627.9 481 63.4
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 8.5e-176 621.7 850 43.4
VMungo1383G0719 Vigna mungo HOM05D005600 ORTHO05D006682 8.8e-173 611.7 445 69.4
Zm00001eb016670 Zea mays HOM05D005600 ORTHO05D006682 9.1e-170 601.7 505 59.0
Eucgr.B03714 Eucalyptus grandis HOM05D005600 ORTHO05D006682 1.4e-149 534.6 327 79.8
BcaC04g23081 Brassica carinata HOM05D005600 ORTHO05D006682 2.4e-130 470.7 614 44.8
SEGI_34765 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.8e-125 454.5 378 59.5
ClCG03G012990 Citrullus lanatus HOM05D005600 ORTHO05D006682 3.4e-92 344.0 236 71.6
CDE10G0769 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 1.3e-83 315.5 163 89.6
BolC9t54127H Brassica oleracea HOM05D005600 ORTHO05D006682 9.6e-79 299.3 388 46.6
PRCOL_00004432 Prasinoderma coloniale HOM05D005600 ORTHO05D006682 1.3e-70 272.3 611 29.5
MCO11G503 Micromonas commoda HOM05D005600 ORTHO05D006682 4.1e-61 240.7 636 28.8
Lj2A14T50 Lonicera japonica HOM05D005600 ORTHO05D006682 8.8e-56 223.0 216 56.5
Cre12.g524100 Chlamydomonas reinhardtii HOM05D005600 ORTHO05D006682 7.0e-37 160.2 537 26.1
VMungo1383G3426 Vigna mungo HOM05D000002 ORTHO05D000001 1.7e-35 155.6 155 51.6
SEGI_17739 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 2.9e-35 154.8 127 60.6
Atru.chr3.1844 Acer truncatum HOM05D005600 ORTHO05D006682 2.0e-31 142.1 97 68.0
SEGI_12823 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 2.8e-30 138.3 94 64.9
Cfa024653 Carpinus fangiana HOM05D005600 ORTHO05D006682 6.3e-30 137.1 657 21.6
Sabra09G0035600 Salix brachista HOM05D005600 ORTHO05D006682 2.4e-29 135.2 127 54.3
MBI19_g44409_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 2.2e-22 112.1 97 59.8
SEGI_14354 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.5e-18 99.4 135 42.2
VMungo1383G0187 Vigna mungo HOM05D005600 ORTHO05D006682 3.6e-17 94.7 42 97.6
A09p10400 Brassica napus HOM05D005600 ORTHO05D006682 1.7e-14 85.9 98 45.9
QL10p024418 Quercus lobata HOM05D005600 ORTHO05D006682 2.7e-12 78.6 46 78.3
QL10p024490 Quercus lobata HOM05D006369 ORTHO05D007764 1.7e-06 59.3 38 81.6
Hund17892 Selenicereus undatus HOM05D026955 ORTHO05D006682 6.4e-06 57.4 28 85.7


User provided reference genes

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