Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 6.1e-104 381.3 201 100.0
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 2.1e-80 303.1 200 83.5
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 8.1e-80 301.2 194 84.0
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 1.1e-79 300.8 184 88.6
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 1.1e-79 300.8 184 88.6
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 1.1e-79 300.8 194 84.5
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 1.8e-79 300.1 205 81.0
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 4.0e-79 298.9 204 82.8
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 8.9e-79 297.7 203 82.8
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 1.2e-78 297.4 190 85.3
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 1.2e-78 297.4 193 84.5
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 3.4e-78 295.8 208 80.8
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 2.2e-77 293.1 181 87.3
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 2.9e-77 292.7 193 83.9
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 8.4e-77 291.2 196 82.7
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 1.1e-76 290.8 224 76.3
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 3.2e-76 289.3 178 87.6
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 1.2e-75 287.3 191 84.3
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 1.6e-75 287.0 192 82.8
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 2.7e-75 286.2 204 80.9
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 3.5e-75 285.8 196 81.6
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 1.7e-74 283.5 196 81.6
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 3.0e-74 282.7 202 79.2
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 5.1e-74 282.0 224 75.0
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 6.6e-74 281.6 163 92.0
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 6.6e-74 281.6 171 87.1
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 8.6e-74 281.2 175 86.3
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 1.1e-73 280.8 184 85.9
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 1.9e-73 280.0 167 89.2
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 2.5e-73 279.6 172 86.0
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 2.5e-73 279.6 209 76.6
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 3.3e-73 279.3 213 75.6
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 4.3e-73 278.9 213 74.6
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 5.6e-73 278.5 181 81.8
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 7.3e-73 278.1 181 81.8
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 1.2e-72 277.3 164 87.8
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 6.2e-72 275.0 189 79.9
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 6.2e-72 275.0 167 86.2
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 8.1e-72 274.6 200 79.0
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 1.1e-71 274.2 167 85.6
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 1.4e-71 273.9 183 80.9
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 3.1e-71 272.7 189 81.0
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 3.1e-71 272.7 189 81.0
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 4.0e-71 272.3 164 88.4
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 5.2e-71 271.9 165 87.9
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 5.2e-71 271.9 194 77.8
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 1.2e-70 270.8 196 77.0
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 1.2e-70 270.8 196 77.0
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 1.2e-70 270.8 194 77.3
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 1.5e-70 270.4 192 78.6
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 2.6e-70 269.6 193 78.2
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 2.6e-70 269.6 175 82.9
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 3.4e-70 269.2 192 78.6
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 3.4e-70 269.2 180 82.8
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 4.4e-70 268.9 203 74.9
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 5.8e-70 268.5 204 76.5
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 9.9e-70 267.7 207 74.4
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 1.3e-69 267.3 196 76.5
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 1.3e-69 267.3 159 86.2
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 1.7e-69 266.9 193 79.8
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 2.2e-69 266.5 166 86.7
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 2.9e-69 266.2 171 84.8
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 4.9e-69 265.4 209 74.6
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 6.4e-69 265.0 197 77.7
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 8.4e-69 264.6 222 71.6
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 8.4e-69 264.6 153 90.8
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 8.4e-69 264.6 176 81.8
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 1.1e-68 264.2 196 76.0
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 1.1e-68 264.2 196 76.0
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 1.1e-68 264.2 154 89.0
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 1.4e-68 263.8 189 76.7
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 1.4e-68 263.8 204 75.5
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 1.9e-68 263.5 183 81.4
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 3.2e-68 262.7 189 77.2
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 5.4e-68 261.9 154 88.3
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 5.4e-68 261.9 159 82.4
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 7.1e-68 261.5 154 88.3
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 9.3e-68 261.2 189 79.4
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 1.2e-67 260.8 187 78.1
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 1.2e-67 260.8 204 75.0
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 1.6e-67 260.4 159 81.8
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.1e-67 260.0 211 70.6
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 2.1e-67 260.0 174 82.2
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 3.5e-67 259.2 186 77.4
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 3.5e-67 259.2 151 88.7
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 3.5e-67 259.2 145 91.0
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 4.6e-67 258.8 205 71.7
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 4.6e-67 258.8 151 88.1
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 6.0e-67 258.5 173 78.0
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 6.0e-67 258.5 209 70.8
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 7.8e-67 258.1 145 89.7
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 1.0e-66 257.7 199 75.4
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 1.3e-66 257.3 179 78.2
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 1.3e-66 257.3 200 72.5
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 1.7e-66 256.9 198 72.7
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 3.0e-66 256.1 193 74.1
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 3.9e-66 255.8 218 70.6
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 3.9e-66 255.8 218 70.6
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 5.1e-66 255.4 195 73.8
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 6.6e-66 255.0 168 79.2
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 3.3e-65 252.7 192 74.5
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 3.3e-65 252.7 181 78.5
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 7.3e-65 251.5 193 72.5
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 9.6e-65 251.1 195 72.8
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 9.6e-65 251.1 205 69.8
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 9.6e-65 251.1 164 78.0
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 9.6e-65 251.1 164 78.0
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 9.6e-65 251.1 164 78.0
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 9.6e-65 251.1 174 76.4
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 9.6e-65 251.1 197 72.1
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 2.1e-64 250.0 148 86.5
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 2.1e-64 250.0 207 70.5
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 4.8e-64 248.8 214 70.6
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 6.2e-64 248.4 207 71.0
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 8.1e-64 248.1 230 64.8
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 1.4e-63 247.3 151 83.4
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.4e-63 247.3 151 83.4
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.4e-63 247.3 151 83.4
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 9.9e-62 241.1 142 84.5
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 9.9e-62 241.1 182 73.6
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 1.7e-61 240.4 137 86.9
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 4.9e-61 238.8 158 81.6
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 4.9e-61 238.8 220 67.3
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 1.9e-60 236.9 149 83.2
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 1.6e-59 233.8 155 80.0
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 1.6e-59 233.8 140 83.6
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 2.1e-59 233.4 204 68.6
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 6.6e-58 228.4 152 80.9
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 3.3e-57 226.1 202 67.3
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 5.6e-57 225.3 165 75.2
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 5.6e-57 225.3 204 67.2
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 5.6e-57 225.3 204 67.2
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 7.3e-57 224.9 209 65.1
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 2.1e-56 223.4 134 83.6
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 1.8e-55 220.3 192 67.2
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 6.9e-55 218.4 183 71.0
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 5.8e-54 215.3 200 64.0
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 2.3e-50 203.4 159 72.3
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.1e-49 201.1 182 64.8
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 9.6e-49 198.0 120 85.8
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 2.8e-48 196.4 158 72.8
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 3.1e-47 193.0 146 74.0
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 3.1e-47 193.0 157 65.0
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 4.5e-46 189.1 171 66.7
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 9.3e-44 181.4 194 57.7
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 1.2e-43 181.0 204 60.3
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 1.2e-43 181.0 123 77.2
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 2.1e-43 180.3 168 63.1
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 3.9e-42 176.0 157 63.7
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 7.2e-36 155.2 187 52.9
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.6e-35 154.1 201 51.2
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.6e-35 154.1 201 51.2
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 6.1e-35 152.1 189 57.1
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 3.9e-34 149.4 109 73.4
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 5.1e-34 149.1 177 52.5
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 6.7e-34 148.7 94 79.8
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 5.5e-28 129.0 136 52.2
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.9e-20 104.0 182 44.0
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 7.9e-19 98.6 53 88.7
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 2.0e-14 84.0 80 66.2
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 5.9e-14 82.4 77 64.9
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 7.7e-14 82.0 40 100.0
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 1.5e-12 77.8 52 71.2
EL10Ac1g00433 Beta vulgaris HOM05D004370 ORTHO05D005084 4.5e-06 56.2 123 40.7


User provided reference genes

Program Settings