Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020063 Carpinus fangiana HOM05D000228 ORTHO05D024824 1.1e-47 193.0 95 100.0
ATR0661G313 Amborella trichopoda HOM05D000228 ORTHO05D001545 1.3e-24 116.3 96 62.5
Dinv39555 Davidia involucrata HOM05D000228 ORTHO05D001545 1.3e-24 116.3 96 62.5
ECA247G3915 Erigeron canadensis HOM05D000228 ORTHO05D001545 1.3e-24 116.3 96 62.5
HanXRQChr04g0107401 Helianthus annuus HOM05D000228 ORTHO05D001545 1.3e-24 116.3 96 62.5
Hma1.2p1_1598F.1_g292950 Hydrangea macrophylla HOM05D000228 ORTHO05D001545 1.3e-24 116.3 96 62.5
SGA_v2.0_scaffold116G32283 Striga asiatica HOM05D000228 ORTHO05D001545 1.3e-24 116.3 96 62.5
SGA_v2.0_scaffold127G34014 Striga asiatica HOM05D000228 ORTHO05D001545 1.3e-24 116.3 96 62.5
TAR376G0725 Trochodendron aralioides HOM05D000228 ORTHO05D001545 1.3e-24 116.3 96 62.5
TAR628G0489 Trochodendron aralioides HOM05D000228 ORTHO05D001545 1.3e-24 116.3 96 62.5
vmacro04378 Vaccinium macrocarpon HOM05D000228 ORTHO05D001545 1.3e-24 116.3 96 62.5
Aqoxy5G01098 Aquilegia oxysepala HOM05D000228 ORTHO05D001545 2.2e-24 115.5 96 61.5
CSS0034780 Camellia sinensis var. sinensis HOM05D000228 ORTHO05D001545 2.2e-24 115.5 96 61.5
CSS0036491 Camellia sinensis var. sinensis HOM05D000228 ORTHO05D001545 2.2e-24 115.5 96 61.5
Lsat_1_v5_gn_1_12220 Lactuca sativa HOM05D000228 ORTHO05D001545 2.2e-24 115.5 96 61.5
MBI11_g09467_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D001545 2.2e-24 115.5 96 61.5
Lj4C801G10 Lonicera japonica HOM05D000228 ORTHO05D001545 4.8e-24 114.4 96 60.4
Nn6g31908 Nelumbo nucifera HOM05D000228 ORTHO05D001545 4.8e-24 114.4 96 61.5
Actinidia29769 Actinidia chinensis HOM05D000228 ORTHO05D001545 8.2e-24 113.6 96 61.5
ClCG10G000460 Citrullus lanatus HOM05D000228 ORTHO05D001545 8.2e-24 113.6 96 61.5
MELO3C013741.2 Cucumis melo HOM05D000228 ORTHO05D001545 8.2e-24 113.6 96 61.5
CsaV3_3G000490 Cucumis sativus L. HOM05D000228 ORTHO05D001545 8.2e-24 113.6 96 61.5
Oeu012551.1 Olea europaea HOM05D000228 ORTHO05D001545 8.2e-24 113.6 96 61.5
Oeu039718.1 Olea europaea HOM05D000228 ORTHO05D001545 8.2e-24 113.6 96 61.5
Dinv31892 Davidia involucrata HOM05D000228 ORTHO05D001545 1.1e-23 113.2 96 60.4
MD02G1123400 Malus domestica HOM05D000228 ORTHO05D001545 1.8e-23 112.5 96 60.4
Manes.01G151000 Manihot esculenta HOM05D000228 ORTHO05D001545 1.8e-23 112.5 94 61.7
Prupe.7G175200 Prunus persica HOM05D000228 ORTHO05D001545 2.4e-23 112.1 96 61.5
CAN.G890.26 Capsicum annuum HOM05D000228 ORTHO05D001545 3.1e-23 111.7 95 60.0
Cfa007031 Carpinus fangiana HOM05D000228 ORTHO05D001545 3.1e-23 111.7 96 60.4
Haze_03702 Corylus avellana HOM05D000228 ORTHO05D001545 3.1e-23 111.7 96 60.4
Dinv40146 Davidia involucrata HOM05D000228 ORTHO05D001545 3.1e-23 111.7 96 60.4
Nitab4.5_0001696g0010 Nicotiana tabacum HOM05D000228 ORTHO05D001545 3.1e-23 111.7 95 60.0
Nitab4.5_0006892g0040 Nicotiana tabacum HOM05D000228 ORTHO05D001545 3.1e-23 111.7 95 60.0
Peaxi162Scf00328g00128 Petunia axillaris HOM05D000228 ORTHO05D001545 3.1e-23 111.7 95 60.0
SEGI_24851 Sequoiadendron giganteum HOM05D000228 ORTHO05D001545 3.1e-23 111.7 96 59.4
Sopen02g028130 Solanum pennellii HOM05D000228 ORTHO05D001545 3.1e-23 111.7 95 60.0
CDE02G1347 Ceratophyllum demersum HOM05D000228 ORTHO05D001545 4.1e-23 111.3 96 59.4
CDE04G2464 Ceratophyllum demersum HOM05D000228 ORTHO05D001545 4.1e-23 111.3 96 59.4
MD15G1237200 Malus domestica HOM05D000228 ORTHO05D001545 4.1e-23 111.3 96 60.4
Lalb_Chr16g0377361 Lupinus albus HOM05D000228 ORTHO05D001545 5.3e-23 110.9 95 60.0
Atru.chr3.911 Acer truncatum HOM05D000228 ORTHO05D001545 7.0e-23 110.5 95 60.0
PGSC0003DMG400003590 Solanum tuberosum HOM05D000228 ORTHO05D001545 7.0e-23 110.5 95 58.9
FAN23G1904 Fragaria x ananassa HOM05D000228 ORTHO05D001545 9.1e-23 110.2 96 59.4
FAN28G2440 Fragaria x ananassa HOM05D000228 ORTHO05D001545 9.1e-23 110.2 96 59.4
PSO541G3277 Papaver somniferum HOM05D000228 ORTHO05D001545 9.1e-23 110.2 96 59.4
PSO675G5068 Papaver somniferum HOM05D000228 ORTHO05D001545 9.1e-23 110.2 96 59.4
RcHm_v2.0_Chr2g0098321 Rosa chinensis HOM05D000228 ORTHO05D001545 9.1e-23 110.2 96 59.4
Sc03g0003780 Simmondsia chinensis HOM05D000228 ORTHO05D001545 9.1e-23 110.2 96 57.3
CiPaw.07G063400 Carya illinoinensis HOM05D000228 ORTHO05D001545 1.2e-22 109.8 96 59.4
Glyma.01G162200 Glycine max HOM05D000228 ORTHO05D001545 1.2e-22 109.8 94 59.6
Glyma.11G081200 Glycine max HOM05D000228 ORTHO05D001545 1.2e-22 109.8 94 59.6
TPR.G25137 Trifolium pratense HOM05D000228 ORTHO05D001545 1.2e-22 109.8 94 59.6
Ciclev10024686m.g Citrus clementina HOM05D000228 ORTHO05D001545 1.6e-22 109.4 96 58.3
Duzib187G1668 Durio zibethinus HOM05D000228 ORTHO05D001545 1.6e-22 109.4 94 59.6
FAN19G0156 Fragaria x ananassa HOM05D000228 ORTHO05D001545 2.0e-22 109.0 96 58.3
FAN26G3056 Fragaria x ananassa HOM05D000228 ORTHO05D001545 2.0e-22 109.0 96 58.3
Glyma.09G278900 Glycine max HOM05D000228 ORTHO05D001545 2.0e-22 109.0 95 56.8
Phvul.002G104500 Phaseolus vulgaris HOM05D000228 ORTHO05D001545 2.0e-22 109.0 94 59.6
TWI09G0739 Tripterygium wilfordii HOM05D000228 ORTHO05D001545 2.0e-22 109.0 95 62.1
Eucgr.I02304 Eucalyptus grandis HOM05D000228 ORTHO05D001545 2.7e-22 108.6 96 59.4
Lalb_Chr17g0338771 Lupinus albus HOM05D000228 ORTHO05D001545 3.5e-22 108.2 94 59.6
Ca_24944_v3 Cicer arietinum L. HOM05D000228 ORTHO05D001545 4.5e-22 107.8 94 59.6
DCAR_016740 Daucus carota HOM05D000228 ORTHO05D001545 4.5e-22 107.8 96 58.3
Hund16621 Selenicereus undatus HOM05D000228 ORTHO05D001545 4.5e-22 107.8 96 57.3
THA.LOC104804281 Tarenaya hassleriana HOM05D000228 ORTHO05D001545 4.5e-22 107.8 94 58.5
COL.COLO4_22497 Corchorus olitorius HOM05D000228 ORTHO05D001545 5.9e-22 107.5 94 58.5
Migut.N01734 Erythranthe guttata HOM05D000228 ORTHO05D001545 5.9e-22 107.5 96 57.3
QL06p052095 Quercus lobata HOM05D000228 ORTHO05D001545 5.9e-22 107.5 96 57.3
BcaC01g00521 Brassica carinata HOM05D000315 ORTHO05D001545 7.7e-22 107.1 94 58.5
BcaC07g38102 Brassica carinata HOM05D000228 ORTHO05D001545 7.7e-22 107.1 94 58.5
A08p21640 Brassica napus HOM05D000228 ORTHO05D001545 7.7e-22 107.1 94 58.5
C03p80930 Brassica napus HOM05D000228 ORTHO05D001545 7.7e-22 107.1 94 58.5
BraA08t34114Z Brassica rapa HOM05D000228 ORTHO05D001545 7.7e-22 107.1 94 58.5
Gohir.A02G174500 Gossypium hirsutum HOM05D000228 ORTHO05D001545 1.0e-21 106.7 94 58.5
Gohir.D03G005300 Gossypium hirsutum HOM05D000228 ORTHO05D001545 1.0e-21 106.7 94 58.5
Gorai.003G005700 Gossypium raimondii HOM05D000228 ORTHO05D001545 1.0e-21 106.7 94 58.5
Aa31LG6G12760 Aethionema arabicum HOM05D000228 ORTHO05D001545 1.3e-21 106.3 94 58.5
arahy.Tifrunner.gnm1.ann1.FVA0CM Arachis hypogaea HOM05D000228 ORTHO05D001545 1.3e-21 106.3 94 58.5
arahy.Tifrunner.gnm1.ann1.XNR9AR Arachis hypogaea HOM05D000228 ORTHO05D001545 1.3e-21 106.3 94 58.5
BolC3t20350H Brassica oleracea HOM05D000228 ORTHO05D001545 1.3e-21 106.3 94 58.5
Gohir.A11G171700 Gossypium hirsutum HOM05D000228 ORTHO05D001545 1.3e-21 106.3 94 58.5
Gohir.D11G178600 Gossypium hirsutum HOM05D000228 ORTHO05D001545 1.3e-21 106.3 94 58.5
Gorai.007G190500 Gossypium raimondii HOM05D000228 ORTHO05D001545 1.3e-21 106.3 94 58.5
Lalb_Chr09g0321431 Lupinus albus HOM05D000228 ORTHO05D001545 1.3e-21 106.3 94 57.4
PGR119G0284 Punica granatum HOM05D000228 ORTHO05D001545 1.3e-21 106.3 96 56.2
Sed0006002 Sechium edule HOM05D000228 ORTHO05D001545 1.3e-21 106.3 96 58.3
AL7G15270 Arabidopsis lyrata HOM05D000228 ORTHO05D001545 1.7e-21 105.9 94 58.5
AT4G35800 Arabidopsis thaliana HOM05D000228 ORTHO05D001545 1.7e-21 105.9 94 58.5
Thecc.01G011300 Theobroma cacao HOM05D000228 ORTHO05D001545 1.7e-21 105.9 94 58.5
BcaNung00792 Brassica carinata HOM05D000228 ORTHO05D001545 2.2e-21 105.5 94 58.5
C01p03210 Brassica napus HOM05D000228 ORTHO05D001545 2.2e-21 105.5 94 58.5
BraA01t00274Z Brassica rapa HOM05D000315 ORTHO05D001545 2.2e-21 105.5 94 58.5
Os05g0151000 Oryza sativa ssp. japonica HOM05D000228 ORTHO05D001545 2.2e-21 105.5 96 55.2
VMungo1215G1821 Vigna mungo HOM05D000228 ORTHO05D001545 2.2e-21 105.5 94 57.4
Carub.0007s0443 Capsella rubella HOM05D000228 ORTHO05D001545 2.9e-21 105.1 94 57.4
CARHR244170 Cardamine hirsuta HOM05D000228 ORTHO05D001545 2.9e-21 105.1 94 57.4
BcaC01g00522 Brassica carinata HOM05D000228 ORTHO05D001545 3.8e-21 104.8 94 57.4
Mapoly0070s0048 Marchantia polymorpha HOM05D000228 ORTHO05D001545 3.8e-21 104.8 95 54.7
Medtr5g023020 Medicago truncatula HOM05D000228 ORTHO05D001545 5.0e-21 104.4 94 57.4
Potri.005G107600 Populus trichocarpa HOM05D000228 ORTHO05D001545 5.0e-21 104.4 94 58.5
Sabra05G0088100 Salix brachista HOM05D000228 ORTHO05D001545 5.0e-21 104.4 94 58.5
A01p02890 Brassica napus HOM05D000228 ORTHO05D001545 8.5e-21 103.6 94 58.5
Cc07_g11340 Coffea canephora HOM05D000228 ORTHO05D001545 8.5e-21 103.6 96 56.2
Cc08_g04850 Coffea canephora HOM05D000228 ORTHO05D001545 8.5e-21 103.6 96 56.2
SMO203G0153 Selaginella moellendorffii HOM05D000228 ORTHO05D001545 8.5e-21 103.6 95 55.8
AUR62026224 Chenopodium quinoa HOM05D000228 ORTHO05D001545 1.1e-20 103.2 96 55.2
Sp7g33590 Schrenkiella parvula HOM05D000228 ORTHO05D001545 1.5e-20 102.8 94 56.4
EL10Ac6g13333 Beta vulgaris HOM05D000228 ORTHO05D001545 1.9e-20 102.4 96 54.2
AUR62026407 Chenopodium quinoa HOM05D000228 ORTHO05D001545 1.9e-20 102.4 96 54.2
Eucgr.F01570 Eucalyptus grandis HOM05D000228 ORTHO05D001545 3.2e-20 101.7 96 56.2
Psat2g151880 Pisum sativum HOM05D000228 ORTHO05D001545 3.2e-20 101.7 94 55.3
Thhalv10024193m.g Eutrema salsugineum HOM05D000228 ORTHO05D001545 4.2e-20 101.3 94 56.4
Pp3c14_14540 Physcomitrium patens HOM05D000228 ORTHO05D001545 4.2e-20 101.3 95 53.7
Pp3c1_32300 Physcomitrium patens HOM05D000228 ORTHO05D001545 4.2e-20 101.3 95 53.7
Ah.03g134280 Amaranthus hybridus HOM05D000228 ORTHO05D001545 5.5e-20 100.9 96 54.2
Zm00001eb416050 Zea mays HOM05D000228 ORTHO05D001545 9.4e-20 100.1 95 54.7
Lj2g0016023 Lotus japonicus HOM05D000228 ORTHO05D001545 1.2e-19 99.8 94 56.4
Ah.02g129100 Amaranthus hybridus HOM05D000228 ORTHO05D001545 2.1e-19 99.0 96 53.1
Rhsim10G0205500 Rhododendron simsii HOM05D000228 ORTHO05D001545 2.1e-19 99.0 96 53.1
Actinidia17401 Actinidia chinensis HOM05D000228 ORTHO05D001545 6.1e-19 97.4 96 55.2
RhsimUnG0152400 Rhododendron simsii HOM05D000228 ORTHO05D001545 6.1e-19 97.4 96 52.1
ECA233G2080 Erigeron canadensis HOM05D000228 ORTHO05D001545 1.8e-18 95.9 96 53.1
vmacro20497 Vaccinium macrocarpon HOM05D000228 ORTHO05D001545 1.8e-18 95.9 93 53.8
HPP92_022753 Vanilla planifolia HOM05D000228 ORTHO05D024824 1.8e-18 95.9 96 50.0
BcaNung04874 Brassica carinata HOM05D000228 ORTHO05D001545 2.3e-18 95.5 92 55.4
ECA233G0514 Erigeron canadensis HOM05D000228 ORTHO05D001545 2.3e-18 95.5 96 52.1
ECA233G5495 Erigeron canadensis HOM05D000228 ORTHO05D001545 3.0e-18 95.1 96 53.1
CBR_g42147 Chara braunii HOM05D000228 ORTHO05D001545 4.0e-18 94.7 92 52.2
RcHm_v2.0_Chr2g0098331 Rosa chinensis HOM05D000228 ORTHO05D001545 8.8e-18 93.6 95 52.6
MD02G1123200 Malus domestica HOM05D000228 ORTHO05D001545 2.6e-17 92.0 95 51.6
CSS0032530 Camellia sinensis var. sinensis HOM05D000228 ORTHO05D001545 1.3e-16 89.7 96 54.2
arahy.Tifrunner.gnm1.ann1.9K73PE Arachis hypogaea HOM05D000228 ORTHO05D001545 3.7e-16 88.2 93 50.5
arahy.Tifrunner.gnm1.ann1.BXI6FM Arachis hypogaea HOM05D000228 ORTHO05D001545 3.7e-16 88.2 93 49.5
arahy.Tifrunner.gnm1.ann1.FL0A4X Arachis hypogaea HOM05D000228 ORTHO05D001545 3.7e-16 88.2 93 50.5
arahy.Tifrunner.gnm1.ann1.J6X5FL Arachis hypogaea HOM05D000228 ORTHO05D001545 2.4e-15 85.5 93 50.5
arahy.Tifrunner.gnm1.ann1.32E6CA Arachis hypogaea HOM05D000228 ORTHO05D001545 3.5e-14 81.6 93 46.2
Aqoxy5G00747 Aquilegia oxysepala HOM05D000228 ORTHO05D001545 7.7e-14 80.5 94 44.7
FAN28G1830 Fragaria x ananassa HOM05D000228 ORTHO05D001545 7.7e-14 80.5 95 44.2
FAN23G0813 Fragaria x ananassa HOM05D000228 ORTHO05D001545 1.0e-13 80.1 95 44.2
FvH4_1g11070 Fragaria vesca HOM05D000228 ORTHO05D001545 2.9e-13 78.6 95 44.2
FAN19G0561 Fragaria x ananassa HOM05D000228 ORTHO05D001545 2.9e-13 78.6 95 44.2
FAN26G0663 Fragaria x ananassa HOM05D000228 ORTHO05D001545 2.9e-13 78.6 95 44.2
SGA_v2.0_scaffold15G07314 Striga asiatica HOM05D000228 ORTHO05D001545 2.9e-13 78.6 90 45.6
arahy.Tifrunner.gnm1.ann1.248CB6 Arachis hypogaea HOM05D000228 ORTHO05D001545 8.6e-13 77.0 93 44.1
SEGI_13624 Sequoiadendron giganteum HOM05D000228 ORTHO05D001545 1.6e-11 72.8 93 43.0
Lj4C226G8 Lonicera japonica HOM05D000228 ORTHO05D001545 2.1e-11 72.4 96 41.7
Duzib145G0004 Durio zibethinus HOM05D000228 ORTHO05D001545 8.0e-11 70.5 69 52.2
CAN.G843.57 Capsicum annuum HOM05D000228 ORTHO05D024824 4.4e-09 64.7 49 61.2
CAN.G133.5 Capsicum annuum HOM05D000228 ORTHO05D001545 7.5e-09 63.9 46 65.2
MCO15G374 Micromonas commoda HOM05D000228 ORTHO05D001545 9.8e-09 63.5 80 45.0
CAN.G348.5 Capsicum annuum HOM05D000228 ORTHO05D001545 1.3e-08 63.2 46 65.2
Ciclev10001675m.g Citrus clementina HOM05D000228 ORTHO05D001545 2.8e-08 62.0 73 46.6
CAN.G28.17 Capsicum annuum HOM05D000228 ORTHO05D024824 4.9e-08 61.2 43 67.4
PRCOL_00006783 Prasinoderma coloniale HOM05D000228 ORTHO05D001545 4.9e-08 61.2 90 37.8
unitig_0.g552 Utricularia gibba HOM05D000228 ORTHO05D001545 1.4e-07 59.7 41 70.7


User provided reference genes

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