Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 1.5e-110 403.3 275 100.0
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 7.7e-107 391.0 274 97.1
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 3.3e-81 305.8 292 71.9
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 1.2e-80 303.9 292 70.9
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 1.6e-80 303.5 193 83.9
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 8.1e-80 301.2 292 69.5
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 1.4e-76 290.4 292 71.6
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 7.1e-76 288.1 284 73.9
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 1.6e-75 287.0 239 74.1
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 6.0e-75 285.0 285 70.5
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 1.3e-74 283.9 284 70.4
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 1.3e-74 283.9 284 70.4
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 1.3e-74 283.9 225 71.6
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 1.5e-73 280.4 285 70.9
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 1.5e-73 280.4 281 72.6
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 3.6e-72 275.8 234 66.7
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 1.4e-71 273.9 219 74.0
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 1.4e-71 273.9 155 90.3
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 1.4e-71 273.9 282 72.3
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 1.8e-71 273.5 282 69.5
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 4.0e-71 272.3 232 73.7
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 8.9e-71 271.2 287 71.1
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 2.0e-70 270.0 299 63.9
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 2.6e-70 269.6 232 78.4
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 3.4e-70 269.2 152 92.1
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 3.4e-70 269.2 155 91.0
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 7.6e-70 268.1 152 93.4
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 9.9e-70 267.7 272 76.8
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.7e-69 266.9 155 90.3
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 1.7e-69 266.9 229 71.6
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 1.7e-69 266.9 152 90.8
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 1.7e-69 266.9 225 69.3
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 2.2e-69 266.5 155 90.3
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 2.2e-69 266.5 154 90.3
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 2.2e-69 266.5 155 88.4
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 2.9e-69 266.2 152 90.8
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 6.4e-69 265.0 296 64.9
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 6.4e-69 265.0 286 71.7
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 6.4e-69 265.0 281 68.7
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 6.4e-69 265.0 156 88.5
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 8.4e-69 264.6 152 91.4
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 8.4e-69 264.6 299 64.5
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 8.4e-69 264.6 190 76.8
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 1.1e-68 264.2 230 71.7
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 1.4e-68 263.8 216 78.2
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 1.4e-68 263.8 287 65.9
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 1.4e-68 263.8 223 67.7
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 1.4e-68 263.8 182 76.9
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 1.9e-68 263.5 154 89.6
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 1.9e-68 263.5 296 68.2
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 1.9e-68 263.5 288 64.2
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 1.9e-68 263.5 228 78.5
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 1.9e-68 263.5 146 93.2
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 3.2e-68 262.7 231 76.2
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 3.2e-68 262.7 186 75.3
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 3.2e-68 262.7 152 89.5
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 3.2e-68 262.7 284 72.5
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 4.2e-68 262.3 152 88.8
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 5.4e-68 261.9 189 76.2
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 5.4e-68 261.9 278 69.8
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 5.4e-68 261.9 155 89.0
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 7.1e-68 261.5 191 75.4
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 7.1e-68 261.5 153 89.5
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 7.1e-68 261.5 298 65.1
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 9.3e-68 261.2 296 64.2
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 9.3e-68 261.2 155 87.1
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 1.2e-67 260.8 220 71.4
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 1.2e-67 260.8 220 71.4
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 1.2e-67 260.8 288 72.2
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 1.6e-67 260.4 238 65.5
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 1.6e-67 260.4 187 82.4
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 1.6e-67 260.4 187 82.4
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 1.6e-67 260.4 284 68.0
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 2.1e-67 260.0 230 70.9
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 2.1e-67 260.0 224 71.9
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 2.7e-67 259.6 217 70.5
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 2.7e-67 259.6 282 71.3
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 3.5e-67 259.2 152 89.5
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 3.5e-67 259.2 191 75.9
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 3.5e-67 259.2 223 70.4
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 3.5e-67 259.2 213 77.5
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 3.5e-67 259.2 156 86.5
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 4.6e-67 258.8 229 76.4
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 4.6e-67 258.8 202 73.3
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 4.6e-67 258.8 305 67.9
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 6.0e-67 258.5 154 84.4
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.0e-66 257.7 291 61.2
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 1.7e-66 256.9 154 87.7
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 2.3e-66 256.5 154 85.1
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 3.9e-66 255.8 295 61.4
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 3.9e-66 255.8 191 74.9
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 3.9e-66 255.8 191 74.9
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 5.1e-66 255.4 290 65.5
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 6.6e-66 255.0 285 66.7
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 8.7e-66 254.6 225 66.7
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 8.7e-66 254.6 290 65.5
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 1.5e-65 253.8 154 83.8
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 1.5e-65 253.8 294 66.7
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 1.9e-65 253.4 148 87.2
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 2.5e-65 253.1 160 85.0
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 5.6e-65 251.9 224 64.3
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 7.3e-65 251.5 155 83.9
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 9.6e-65 251.1 155 83.9
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 2.8e-64 249.6 151 84.1
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 2.8e-64 249.6 151 84.1
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 3.6e-64 249.2 247 63.6
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 3.6e-64 249.2 247 63.6
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 3.6e-64 249.2 230 72.2
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 6.2e-64 248.4 155 83.9
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 6.2e-64 248.4 217 69.1
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 1.1e-63 247.7 281 71.5
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 1.8e-63 246.9 286 66.8
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 3.1e-63 246.1 155 82.6
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 5.3e-63 245.4 247 62.3
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 1.2e-62 244.2 157 80.9
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 5.8e-62 241.9 291 58.8
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 5.8e-62 241.9 292 72.9
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 7.6e-62 241.5 294 67.0
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 7.6e-62 241.5 155 81.9
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 9.9e-62 241.1 229 72.1
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 1.3e-61 240.7 298 62.1
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 1.7e-61 240.4 145 85.5
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 1.7e-61 240.4 297 62.0
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 4.9e-61 238.8 252 63.5
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 1.2e-59 234.2 131 91.6
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 2.7e-59 233.0 222 75.7
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 2.7e-59 233.0 143 83.9
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 1.7e-58 230.3 153 81.7
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 2.3e-58 229.9 283 68.9
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 5.1e-58 228.8 298 68.5
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 1.9e-57 226.9 230 66.5
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 1.4e-55 220.7 147 80.3
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 4.0e-55 219.2 137 81.8
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 5.5e-52 208.8 211 59.2
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 7.1e-52 208.4 155 73.5
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 3.5e-51 206.1 286 57.0
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 3.5e-51 206.1 286 57.0
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 1.0e-50 204.5 227 55.5
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 6.7e-50 201.8 207 59.9
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 1.1e-49 201.1 121 86.8
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 1.3e-48 197.6 127 81.9
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 1.5e-46 190.7 155 65.2
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 1.0e-45 188.0 122 82.0
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 2.2e-45 186.8 154 68.2
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 2.7e-43 179.9 196 56.1
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 3.9e-42 176.0 290 57.9
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 3.9e-42 176.0 125 74.4
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 2.5e-41 173.3 152 63.8
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 2.8e-40 169.9 154 61.7
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 2.2e-37 160.2 162 58.6
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 2.9e-37 159.8 94 85.1
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 3.5e-35 152.9 110 75.5
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 3.1e-31 139.8 188 48.4
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 3.1e-31 139.8 188 48.4
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 6.9e-31 138.7 188 48.4
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 6.9e-31 138.7 155 53.5
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 1.6e-27 127.5 139 53.2
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.5e-22 110.9 141 48.2
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 7.9e-19 98.6 53 88.7
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 7.7e-14 82.0 40 100.0
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 3.2e-12 76.6 51 76.5
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 1.6e-11 74.3 149 41.6
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 3.0e-10 70.1 44 79.5
EL10Ac1g00433 Beta vulgaris HOM05D004370 ORTHO05D005084 4.1e-07 59.7 65 53.8


User provided reference genes

Program Settings