Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc10_g13130 Coffea canephora HOM05D005037 ORTHO05D006274 2.4e-201 705.3 357 100.0
Oeu002392.1 Olea europaea HOM05D005037 ORTHO05D006274 9.6e-166 587.0 358 81.0
Actinidia16585 Actinidia chinensis HOM05D005037 ORTHO05D006274 2.4e-164 582.4 357 79.8
MSTRG.1382 Avicennia marina HOM05D005037 ORTHO05D006274 2.4e-164 582.4 358 81.0
SalBow7G3864 Salvia bowleyana HOM05D005037 ORTHO05D006274 3.1e-164 582.0 358 81.0
Nitab4.5_0000174g0240 Nicotiana tabacum HOM05D005037 ORTHO05D006274 6.8e-164 580.9 373 79.6
TAR381G0890 Trochodendron aralioides HOM05D005037 ORTHO05D006274 6.8e-164 580.9 358 79.3
Peaxi162Scf00066g01930 Petunia axillaris HOM05D005037 ORTHO05D006274 1.2e-163 580.1 373 79.4
Nitab4.5_0002972g0050 Nicotiana tabacum HOM05D005037 ORTHO05D006274 4.4e-163 578.2 373 79.6
PGSC0003DMG400024852 Solanum tuberosum HOM05D005037 ORTHO05D006274 5.8e-163 577.8 373 78.3
Migut.C01102 Erythranthe guttata HOM05D005037 ORTHO05D006274 7.1e-161 570.9 362 78.5
TWI32G0322 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 4.6e-160 568.2 359 78.0
Atru.chr13.1666 Acer truncatum HOM05D005037 ORTHO05D006274 1.7e-159 566.2 358 77.4
Ciclev10001639m.g Citrus clementina HOM05D005037 ORTHO05D006274 3.9e-159 565.1 358 77.4
Manes.02G173400 Manihot esculenta HOM05D005037 ORTHO05D006274 9.6e-158 560.5 357 76.8
Nn5g28553 Nelumbo nucifera HOM05D005037 ORTHO05D006274 9.6e-158 560.5 358 76.8
Eucgr.G02653 Eucalyptus grandis HOM05D005037 ORTHO05D006274 4.8e-157 558.1 358 77.1
Sopen04g026520 Solanum pennellii HOM05D005037 ORTHO05D006274 4.8e-157 558.1 373 75.6
Solyc04g064570.3 Solanum lycopersicum HOM05D005037 ORTHO05D006274 1.4e-156 556.6 373 75.3
GSVIVG01010010001 Vitis vinifera HOM05D005037 ORTHO05D006274 2.4e-156 555.8 359 78.3
CAN.G657.3 Capsicum annuum HOM05D005037 ORTHO05D006274 3.1e-156 555.4 373 76.7
Potri.002G073200 Populus trichocarpa HOM05D005037 ORTHO05D006274 4.0e-156 555.1 357 77.0
Duzib041G0013 Durio zibethinus HOM05D005037 ORTHO05D006274 5.3e-156 554.7 368 76.6
TWI60G0144 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 1.5e-155 553.1 364 75.5
Sabra05G0142600 Salix brachista HOM05D005037 ORTHO05D006274 3.4e-155 552.0 358 77.1
Sc02g0004500 Simmondsia chinensis HOM05D005037 ORTHO05D006274 9.9e-155 550.4 359 77.2
Thecc.08G141200 Theobroma cacao HOM05D005037 ORTHO05D006274 9.9e-155 550.4 369 75.3
Hund17388 Selenicereus undatus HOM05D005037 ORTHO05D006274 1.9e-153 546.2 360 75.0
Gohir.D02G074100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 2.4e-153 545.8 370 75.4
PGR142G4097 Punica granatum HOM05D005037 ORTHO05D006274 4.2e-153 545.0 359 74.9
Cpa.g.sc13.102 Carica papaya HOM05D005037 ORTHO05D006274 9.3e-153 543.9 374 73.3
DCAR_015244 Daucus carota HOM05D005037 ORTHO05D006274 9.3e-153 543.9 367 74.7
Potri.005G186700 Populus trichocarpa HOM05D005037 ORTHO05D006274 2.7e-152 542.3 358 74.9
Gorai.005G083500 Gossypium raimondii HOM05D005037 ORTHO05D006274 3.5e-152 542.0 371 75.2
Gohir.A02G068100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 4.6e-152 541.6 369 74.5
vmacro08710 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 4.6e-152 541.6 359 76.0
Rhsim03G0093500 Rhododendron simsii HOM05D005037 ORTHO05D006274 6.0e-152 541.2 360 76.4
Duzib116G0940 Durio zibethinus HOM05D005037 ORTHO05D006274 1.7e-151 539.7 369 74.3
Aqoxy6G00356 Aquilegia oxysepala HOM05D005037 ORTHO05D006274 6.6e-151 537.7 359 74.4
Sp1g33080 Schrenkiella parvula HOM05D005037 ORTHO05D006274 8.7e-151 537.3 364 73.4
ATR1136G011 Amborella trichopoda HOM05D005037 ORTHO05D006274 3.3e-150 535.4 361 73.7
CANSAT54G1160 Cannabis sativa HOM05D005037 ORTHO05D006274 9.6e-150 533.9 364 72.8
BolC5t32377H Brassica oleracea HOM05D005037 ORTHO05D006274 1.3e-149 533.5 366 73.0
SGA_v2.0_scaffold25G11149 Striga asiatica HOM05D005037 ORTHO05D006274 1.3e-149 533.5 391 72.6
DCAR_019815 Daucus carota HOM05D005037 ORTHO05D006274 2.1e-149 532.7 367 73.3
EL10Ac4g08872 Beta vulgaris HOM05D005037 ORTHO05D006274 2.8e-149 532.3 365 72.3
A05p21790 Brassica napus HOM05D005037 ORTHO05D006274 2.8e-149 532.3 366 72.7
BraA05t21100Z Brassica rapa HOM05D005037 ORTHO05D006274 2.8e-149 532.3 366 72.7
BcaC05g27657 Brassica carinata HOM05D005037 ORTHO05D006274 6.2e-149 531.2 366 72.7
THA.LOC104798858 Tarenaya hassleriana HOM05D005037 ORTHO05D006274 6.2e-149 531.2 378 72.0
EL10Ac1g01450 Beta vulgaris HOM05D005037 ORTHO05D006274 8.1e-149 530.8 365 72.1
A10p07730 Brassica napus HOM05D005037 ORTHO05D006274 8.1e-149 530.8 363 72.2
BraSC36t46032Z Brassica rapa HOM05D005037 ORTHO05D006274 8.1e-149 530.8 363 72.2
BcaB07g33972 Brassica carinata HOM05D005037 ORTHO05D006274 2.4e-148 529.3 363 72.7
MD05G1011400 Malus domestica HOM05D005037 ORTHO05D006274 2.4e-148 529.3 379 69.4
C05p36450 Brassica napus HOM05D005037 ORTHO05D006274 3.1e-148 528.9 366 72.4
AL1G51980 Arabidopsis lyrata HOM05D005037 ORTHO05D006274 9.0e-148 527.3 371 70.9
CARHR035400 Cardamine hirsuta HOM05D005037 ORTHO05D006274 2.0e-147 526.2 372 69.9
Thhalv10011594m.g Eutrema salsugineum HOM05D005037 ORTHO05D006274 2.0e-147 526.2 367 72.8
Carub.0001s3480 Capsella rubella HOM05D005037 ORTHO05D006274 4.5e-147 525.0 371 69.5
CiPaw.16G018700 Carya illinoinensis HOM05D005037 ORTHO05D006274 5.8e-147 524.6 359 73.5
ECA233G3664 Erigeron canadensis HOM05D005037 ORTHO05D006274 5.8e-147 524.6 345 75.1
Prupe.8G016400 Prunus persica HOM05D005037 ORTHO05D006274 9.9e-147 523.9 379 69.7
AT1G43860 Arabidopsis thaliana HOM05D005037 ORTHO05D006274 1.3e-146 523.5 371 69.8
Haze_17689 Corylus avellana HOM05D005037 ORTHO05D006274 1.7e-146 523.1 362 72.9
Ah.10g032080 Amaranthus hybridus HOM05D005037 ORTHO05D006274 2.9e-146 522.3 359 72.4
BcaB02g11416 Brassica carinata HOM05D005037 ORTHO05D006274 2.9e-146 522.3 366 71.3
AUR62027497 Chenopodium quinoa HOM05D005037 ORTHO05D006274 2.9e-146 522.3 360 72.8
CDE02G2089 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 1.4e-145 520.0 363 71.6
HanXRQChr04g0109491 Helianthus annuus HOM05D005037 ORTHO05D006274 7.1e-145 517.7 357 73.4
PSO541G3185 Papaver somniferum HOM05D005037 ORTHO05D006274 1.6e-144 516.5 383 68.1
PSO675G6067 Papaver somniferum HOM05D005037 ORTHO05D006274 1.6e-144 516.5 383 68.1
AUR62033983 Chenopodium quinoa HOM05D005037 ORTHO05D006274 7.9e-144 514.2 360 71.7
RcHm_v2.0_Chr6g0277561 Rosa chinensis HOM05D005037 ORTHO05D006274 2.3e-143 512.7 367 70.8
Lsat_1_v5_gn_1_9740 Lactuca sativa HOM05D005037 ORTHO05D006274 3.9e-143 511.9 372 70.4
PSO673G0007 Papaver somniferum HOM05D005037 ORTHO05D006274 5.1e-143 511.5 366 68.9
arahy.Tifrunner.gnm1.ann1.E7XDIB Arachis hypogaea HOM05D005037 ORTHO05D006274 1.1e-142 510.4 362 70.7
arahy.Tifrunner.gnm1.ann1.HCD3KF Arachis hypogaea HOM05D005037 ORTHO05D006274 1.1e-142 510.4 362 71.0
PSO421G0325 Papaver somniferum HOM05D005037 ORTHO05D006274 1.9e-142 509.6 366 68.0
HPP92_020501 Vanilla planifolia HOM05D005037 ORTHO05D006274 9.6e-142 507.3 358 72.6
Lalb_Chr02g0149921 Lupinus albus HOM05D005037 ORTHO05D006274 1.6e-141 506.5 361 70.1
arahy.Tifrunner.gnm1.ann1.RY8QGI Arachis hypogaea HOM05D005037 ORTHO05D006274 2.1e-141 506.1 361 70.1
Lalb_Chr21g0311851 Lupinus albus HOM05D005037 ORTHO05D006274 2.8e-141 505.8 360 69.7
VMungo0540G1405 Vigna mungo HOM05D005037 ORTHO05D006274 2.8e-141 505.8 359 69.6
Aa31LG6G9500 Aethionema arabicum HOM05D005037 ORTHO05D006274 8.1e-141 504.2 381 68.8
FvH4_2g15010 Fragaria vesca HOM05D005037 ORTHO05D006274 1.1e-140 503.8 374 69.0
Phvul.006G102500 Phaseolus vulgaris HOM05D005037 ORTHO05D006274 1.8e-140 503.1 359 69.6
CDE08G0468 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 2.4e-140 502.7 353 70.8
FAN24G2486 Fragaria x ananassa HOM05D005037 ORTHO05D006274 9.0e-140 500.7 377 69.2
QL09p029039 Quercus lobata HOM05D005037 ORTHO05D006274 1.7e-138 496.5 361 68.4
Sed0001170 Sechium edule HOM05D005037 ORTHO05D006274 8.4e-138 494.2 359 68.5
Medtr6g085170 Medicago truncatula HOM05D005037 ORTHO05D006274 2.7e-136 489.2 360 68.1
Ca_30116_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 4.6e-136 488.4 360 67.5
FAN27G1276 Fragaria x ananassa HOM05D005037 ORTHO05D006274 6.0e-136 488.0 376 67.3
MELO3C010584.2 Cucumis melo HOM05D005037 ORTHO05D006274 1.0e-135 487.3 361 68.1
Psat1g039480 Pisum sativum HOM05D005037 ORTHO05D006274 1.0e-135 487.3 360 66.7
CsaV3_6G035600 Cucumis sativus L. HOM05D005037 ORTHO05D006274 3.9e-135 485.3 361 68.1
TPR.G31447 Trifolium pratense HOM05D005037 ORTHO05D006274 6.7e-135 484.6 360 66.9
Glyma.14G119400 Glycine max HOM05D005037 ORTHO05D006274 8.7e-135 484.2 359 68.0
ClCG08G002740 Citrullus lanatus HOM05D005037 ORTHO05D006274 1.5e-134 483.4 361 67.3
CSS0001186 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.3e-133 480.3 312 76.3
ECA234G0804 Erigeron canadensis HOM05D005037 ORTHO05D006274 1.6e-133 479.9 354 67.8
Lj4A690T47 Lonicera japonica HOM05D005037 ORTHO05D006274 2.4e-132 476.1 306 78.4
Lj1g0018953 Lotus japonicus HOM05D005037 ORTHO05D006274 2.4e-132 476.1 360 66.7
Lj4g0018852 Lotus japonicus HOM05D005037 ORTHO05D006274 3.4e-131 472.2 360 66.1
Glyma.11G142700 Glycine max HOM05D005037 ORTHO05D006274 4.2e-129 465.3 359 66.9
Oeu001556.2 Olea europaea HOM05D005037 ORTHO05D006274 1.8e-127 459.9 351 68.9
SHI09275 Sapria himalayana HOM05D005037 ORTHO05D006274 2.5e-126 456.1 360 65.6
SEGI_36163 Sequoiadendron giganteum HOM05D005037 ORTHO05D006274 1.1e-124 450.7 380 61.1
PSO673G0037 Papaver somniferum HOM05D005037 ORTHO05D006274 1.8e-124 449.9 343 65.9
Dinv41137 Davidia involucrata HOM05D005037 ORTHO05D006274 9.1e-124 447.6 345 69.6
Os08g0107500 Oryza sativa ssp. japonica HOM05D005037 ORTHO05D006274 8.5e-122 441.0 360 60.6
Zm00001eb260230 Zea mays HOM05D005037 ORTHO05D006274 1.1e-121 440.7 358 61.5
unitig_747.g21501 Utricularia gibba HOM05D005037 ORTHO05D006274 3.3e-118 429.1 299 74.2
HPP92_020498 Vanilla planifolia HOM05D005037 ORTHO05D006274 3.3e-118 429.1 312 71.8
CSS0023189 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 9.1e-116 421.0 312 69.2
SMO348G0060 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 1.6e-112 410.2 363 59.2
Pp3c4_180 Physcomitrium patens HOM05D005037 ORTHO05D006274 2.0e-110 403.3 386 53.1
COL.COLO4_33811 Corchorus olitorius HOM05D005037 ORTHO05D006274 1.1e-105 387.5 370 57.3
AagrBONN_evm.TU.Sc2ySwM_117.3544 Anthoceros agrestis HOM05D005037 ORTHO05D006274 4.0e-103 379.0 355 55.5
vmacro21120 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 9.7e-102 374.4 268 67.9
Ca_25512_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 1.3e-101 374.0 302 61.9
Cfa018383 Carpinus fangiana HOM05D005037 ORTHO05D006274 4.5e-99 365.5 293 63.8
FAN20G2613 Fragaria x ananassa HOM05D005037 ORTHO05D006274 7.8e-83 311.6 189 85.7
PSO729G0215 Papaver somniferum HOM05D005037 ORTHO05D006274 1.2e-70 271.2 258 57.0
FAN15G0656 Fragaria x ananassa HOM05D005037 ORTHO05D006274 2.2e-69 266.9 150 89.3
SMO272G0010 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 4.9e-69 265.8 161 82.6
PRCOL_00006527 Prasinoderma coloniale HOM05D005037 ORTHO05D006274 6.0e-67 258.8 367 41.7
Cre01.g017500 Chlamydomonas reinhardtii HOM05D005037 ORTHO05D006274 1.9e-65 253.8 251 52.6
PSO017G3306 Papaver somniferum HOM05D005037 ORTHO05D006274 2.2e-61 240.4 327 45.0
MD05G1011500 Malus domestica HOM05D005037 ORTHO05D006274 1.1e-60 238.0 244 51.6
CSS0016864 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.2e-54 218.0 159 71.1
CBR_g48721 Chara braunii HOM05D005037 ORTHO05D006274 2.6e-54 216.9 328 37.2
MCO07G375 Micromonas commoda HOM05D005037 ORTHO05D006274 3.2e-52 209.9 181 56.4
CSS0012113 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 3.5e-51 206.5 167 65.9
CSS0029081 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.2e-48 198.0 167 64.1
Mapoly0003s0227 Marchantia polymorpha HOM05D005037 ORTHO05D006274 1.9e-41 174.1 228 41.2
Aa31LG6G9600 Aethionema arabicum HOM05D005037 ORTHO05D006274 9.9e-38 161.8 156 53.2
C06p00420 Brassica napus HOM05D005037 ORTHO05D006274 6.4e-37 159.1 133 65.4
C06p00390 Brassica napus HOM05D005037 ORTHO05D006274 1.4e-36 157.9 133 64.7
vmacro21119 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 2.3e-34 150.6 121 68.6
RcHm_v2.0_Chr2g0145391 Rosa chinensis HOM05D005037 ORTHO05D006274 9.0e-31 138.7 81 86.4
Actinidia15170 Actinidia chinensis HOM05D005037 ORTHO05D006274 9.3e-28 128.6 89 64.0
Actinidia15171 Actinidia chinensis HOM05D005037 ORTHO05D006274 9.6e-25 118.6 84 70.2
BraA06t27783Z Brassica rapa HOM05D005037 ORTHO05D013118 1.5e-22 111.3 111 51.4
PSO729G0072 Papaver somniferum HOM05D005037 ORTHO05D006274 6.0e-19 99.4 183 39.3
CSS0019617 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 5.7e-17 92.8 51 84.3
CSS0038364 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 5.7e-17 92.8 51 84.3
BraA01t00001Z Brassica rapa HOM05D005037 ORTHO05D013118 4.5e-14 83.2 92 48.9


User provided reference genes

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