Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 1.0e-91 340.1 184 100.0
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 1.4e-64 250.0 154 83.1
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 9.3e-64 247.3 151 84.1
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 9.3e-64 247.3 151 84.8
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 9.3e-64 247.3 151 84.8
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 1.6e-63 246.5 151 84.1
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 2.1e-63 246.1 154 83.1
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 2.1e-63 246.1 154 83.1
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 2.1e-63 246.1 154 83.1
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 2.1e-63 246.1 152 87.5
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 2.7e-63 245.7 151 82.8
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 3.5e-63 245.4 154 83.8
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 3.5e-63 245.4 154 83.1
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 3.5e-63 245.4 154 83.1
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 3.5e-63 245.4 154 83.1
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 4.6e-63 245.0 154 82.5
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 6.0e-63 244.6 151 84.1
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 6.0e-63 244.6 151 84.1
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 6.0e-63 244.6 151 84.1
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 6.0e-63 244.6 151 84.1
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 7.8e-63 244.2 156 81.4
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 7.8e-63 244.2 154 83.1
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 7.8e-63 244.2 154 89.6
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 7.8e-63 244.2 151 82.8
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 1.0e-62 243.8 152 83.6
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 1.0e-62 243.8 152 83.6
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 1.0e-62 243.8 152 83.6
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 1.3e-62 243.4 151 83.4
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 1.3e-62 243.4 151 83.4
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 1.3e-62 243.4 151 83.4
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 1.3e-62 243.4 151 82.8
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 1.3e-62 243.4 151 84.1
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 1.7e-62 243.0 154 82.5
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 1.7e-62 243.0 154 82.5
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 1.7e-62 243.0 154 82.5
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 1.7e-62 243.0 154 82.5
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 1.7e-62 243.0 151 83.4
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 2.3e-62 242.7 151 84.1
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 3.0e-62 242.3 154 81.2
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 3.0e-62 242.3 154 81.2
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 3.0e-62 242.3 156 80.8
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 3.0e-62 242.3 154 89.6
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 3.0e-62 242.3 154 90.3
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 3.9e-62 241.9 151 82.8
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 3.9e-62 241.9 157 87.9
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 5.1e-62 241.5 151 84.1
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 6.6e-62 241.1 152 85.5
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 6.6e-62 241.1 151 84.1
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 6.6e-62 241.1 151 82.1
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 8.7e-62 240.7 151 80.8
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 8.7e-62 240.7 151 80.8
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 8.7e-62 240.7 151 84.1
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 1.1e-61 240.4 153 83.7
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 1.5e-61 240.0 154 79.9
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 1.9e-61 239.6 151 84.1
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 1.9e-61 239.6 151 80.8
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 1.9e-61 239.6 151 81.5
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 2.5e-61 239.2 151 80.1
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 2.5e-61 239.2 154 79.9
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 3.3e-61 238.8 151 82.1
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 3.3e-61 238.8 156 81.4
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 3.3e-61 238.8 151 79.5
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 3.3e-61 238.8 151 83.4
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 4.3e-61 238.4 156 80.8
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 4.3e-61 238.4 156 80.8
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 4.3e-61 238.4 151 80.8
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 4.3e-61 238.4 151 82.1
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 7.3e-61 237.7 152 88.8
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 7.3e-61 237.7 151 80.1
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 7.3e-61 237.7 154 89.6
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 9.6e-61 237.3 156 80.8
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 9.6e-61 237.3 155 80.0
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 9.6e-61 237.3 151 82.8
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 1.3e-60 236.9 152 85.5
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 1.3e-60 236.9 154 79.9
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 1.3e-60 236.9 155 80.0
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 1.3e-60 236.9 151 84.8
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 1.6e-60 236.5 151 81.5
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 2.1e-60 236.1 156 80.1
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 2.8e-60 235.7 153 81.7
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 2.8e-60 235.7 155 78.7
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 3.6e-60 235.3 148 83.8
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 3.6e-60 235.3 154 79.2
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 3.6e-60 235.3 151 90.1
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 3.6e-60 235.3 155 78.7
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 4.8e-60 235.0 156 79.5
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 6.2e-60 234.6 151 82.1
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 6.2e-60 234.6 156 78.8
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 8.1e-60 234.2 150 88.7
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 1.1e-59 233.8 151 80.1
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 1.4e-59 233.4 152 80.3
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 2.4e-59 232.6 151 79.5
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 4.0e-59 231.9 148 81.1
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 4.0e-59 231.9 153 81.7
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 4.0e-59 231.9 153 81.7
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 4.0e-59 231.9 146 82.2
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 5.3e-59 231.5 141 84.4
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 5.3e-59 231.5 156 86.5
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 6.9e-59 231.1 151 80.8
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 6.9e-59 231.1 151 80.8
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 9.0e-59 230.7 152 81.6
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 1.2e-58 230.3 149 80.5
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.2e-58 230.3 151 80.1
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 1.5e-58 229.9 152 80.9
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 1.5e-58 229.9 150 76.7
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 1.5e-58 229.9 151 82.1
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 2.0e-58 229.6 151 80.8
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 2.6e-58 229.2 156 77.6
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 2.6e-58 229.2 152 80.9
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 2.6e-58 229.2 152 80.9
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 2.6e-58 229.2 156 77.6
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 3.4e-58 228.8 151 83.4
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 3.4e-58 228.8 151 81.5
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 4.4e-58 228.4 151 82.8
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 4.4e-58 228.4 151 82.8
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 5.8e-58 228.0 151 82.1
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 5.8e-58 228.0 151 82.1
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 9.9e-58 227.3 151 88.7
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 9.9e-58 227.3 154 78.6
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 9.9e-58 227.3 154 78.6
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 9.9e-58 227.3 145 82.8
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 2.9e-57 225.7 153 78.4
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 1.4e-56 223.4 151 84.1
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 1.9e-56 223.0 151 83.4
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 3.2e-56 222.2 157 75.2
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 4.2e-56 221.9 158 84.2
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 5.4e-56 221.5 148 80.4
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 9.3e-56 220.7 147 81.0
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 1.2e-55 220.3 154 75.3
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 2.1e-55 219.5 152 78.3
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 5.6e-53 211.5 143 78.3
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 3.6e-52 208.8 150 74.7
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 3.1e-51 205.7 131 82.4
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 3.4e-50 202.2 128 81.2
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 2.2e-49 199.5 137 77.4
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 6.4e-49 198.0 156 76.9
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 9.3e-48 194.1 150 68.0
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 2.1e-47 193.0 123 81.3
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 1.8e-46 189.9 123 78.9
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 2.8e-44 182.6 147 63.9
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 2.8e-44 182.6 154 69.5
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 2.8e-44 182.6 154 69.5
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 1.4e-43 180.3 120 75.8
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 2.4e-43 179.5 151 72.2
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 2.9e-41 172.6 151 63.6
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 7.1e-40 167.9 151 61.6
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 1.6e-36 156.8 110 76.4
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 2.8e-36 156.0 151 59.6
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 6.2e-36 154.8 125 67.2
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 1.5e-34 150.2 92 82.6
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 4.6e-31 138.7 87 79.3
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 4.3e-29 132.1 147 60.5
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 4.3e-29 132.1 147 60.5
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 4.3e-29 132.1 147 60.5
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 1.3e-28 130.6 95 73.7
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.3e-28 130.6 147 60.5
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 9.0e-27 124.4 139 52.5
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 4.5e-18 95.5 53 86.8
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 8.5e-17 91.3 145 44.8
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 6.1e-15 85.1 45 93.3
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 1.4e-14 84.0 46 89.1
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 3.0e-14 82.8 50 80.0
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 4.4e-13 79.0 40 97.5


User provided reference genes

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