Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc04_g04560 Coffea canephora HOM05D006093 ORTHO05D007652 1.1e-227 793.1 453 100.0
Atru.chr1.2881 Acer truncatum HOM05D006093 ORTHO05D007652 1.2e-136 490.7 285 83.2
Ciclev10025737m.g Citrus clementina HOM05D006093 ORTHO05D007652 4.5e-136 488.8 285 83.5
MSTRG.11153 Avicennia marina HOM05D006093 ORTHO05D007652 7.7e-136 488.0 285 82.8
PGSC0003DMG400014146 Solanum tuberosum HOM05D006093 ORTHO05D007652 5.0e-135 485.3 285 82.1
Migut.I00747 Erythranthe guttata HOM05D006093 ORTHO05D007652 9.4e-134 481.1 419 62.3
CSS0022367 Camellia sinensis var. sinensis HOM05D006093 ORTHO05D007652 2.1e-133 479.9 285 81.8
Thecc.06G031100 Theobroma cacao HOM05D006093 ORTHO05D007652 2.1e-133 479.9 285 81.8
Lj5A75T43 Lonicera japonica HOM05D006093 ORTHO05D007652 7.9e-133 478.0 310 77.1
Solyc03g117510.4 Solanum lycopersicum HOM05D006093 ORTHO05D007652 1.4e-132 477.2 285 81.4
Nitab4.5_0010806g0010 Nicotiana tabacum HOM05D006093 ORTHO05D007652 2.3e-132 476.5 285 79.3
Sopen03g036410 Solanum pennellii HOM05D006093 ORTHO05D007652 5.1e-132 475.3 285 81.4
COL.COLO4_11898 Corchorus olitorius HOM05D006093 ORTHO05D007652 1.1e-131 474.2 285 81.8
Manes.11G058700 Manihot esculenta HOM05D006093 ORTHO05D007652 2.6e-131 473.0 285 79.6
Gohir.D10G082500 Gossypium hirsutum HOM05D006093 ORTHO05D007652 1.3e-130 470.7 285 80.0
Duzib235G0399 Durio zibethinus HOM05D006093 ORTHO05D007652 4.1e-129 465.7 285 79.3
TAR626G1009 Trochodendron aralioides HOM05D006093 ORTHO05D007652 5.3e-129 465.3 285 78.9
Hma1.2p1_0017F.1_g011320 Hydrangea macrophylla HOM05D006093 ORTHO05D007652 2.6e-128 463.0 474 60.1
RcHm_v2.0_Chr2g0134861 Rosa chinensis HOM05D006093 ORTHO05D007652 7.7e-128 461.5 285 79.3
CiPaw.01G249800 Carya illinoinensis HOM05D006093 ORTHO05D007652 1.0e-127 461.1 285 79.3
MD17G1215000 Malus domestica HOM05D006093 ORTHO05D007652 1.7e-127 460.3 285 78.9
PSO170G6797 Papaver somniferum HOM05D006093 ORTHO05D007652 2.2e-127 459.9 287 78.0
Lj3g0003829 Lotus japonicus HOM05D006093 ORTHO05D007652 3.8e-127 459.1 285 77.9
HanXRQChr02g0033451 Helianthus annuus HOM05D006093 ORTHO05D007652 5.0e-127 458.8 285 77.2
ATR0800G026 Amborella trichopoda HOM05D006093 ORTHO05D007652 6.5e-127 458.4 285 77.2
Eucgr.F03905 Eucalyptus grandis HOM05D006093 ORTHO05D007652 1.1e-126 457.6 281 76.9
Lalb_Chr24g0395421 Lupinus albus HOM05D006093 ORTHO05D007652 1.4e-126 457.2 285 78.6
TPR.G37262 Trifolium pratense HOM05D006093 ORTHO05D007652 1.4e-126 457.2 285 77.5
Potri.003G031100 Populus trichocarpa HOM05D006093 ORTHO05D007652 5.5e-126 455.3 285 77.9
Carub.0001s4146 Capsella rubella HOM05D006093 ORTHO05D007652 7.2e-126 454.9 285 78.2
AUR62011503 Chenopodium quinoa HOM05D006093 ORTHO05D007652 7.2e-126 454.9 285 78.2
Sp1g39050 Schrenkiella parvula HOM05D006093 ORTHO05D007652 7.2e-126 454.9 285 77.5
Medtr2g104100 Medicago truncatula HOM05D006093 ORTHO05D007652 9.4e-126 454.5 285 76.8
BcaC08g43998 Brassica carinata HOM05D006093 ORTHO05D007652 1.2e-125 454.1 285 77.5
BolC6t36581H Brassica oleracea HOM05D006093 ORTHO05D007652 1.2e-125 454.1 285 77.2
A05p18970 Brassica napus HOM05D006093 ORTHO05D007652 2.7e-125 453.0 285 77.2
BraA05t20794Z Brassica rapa HOM05D006093 ORTHO05D007652 2.7e-125 453.0 285 77.2
AUR62016319 Chenopodium quinoa HOM05D006093 ORTHO05D007652 3.6e-125 452.6 377 63.7
SalBow2G3638 Salvia bowleyana HOM05D006093 ORTHO05D007652 3.6e-125 452.6 480 55.2
BcaB02g10988 Brassica carinata HOM05D006093 ORTHO05D007652 8.0e-125 451.4 285 77.2
CAN.G407.11 Capsicum annuum HOM05D006093 ORTHO05D007652 8.0e-125 451.4 286 77.6
THA.LOC104818014 Tarenaya hassleriana HOM05D006093 ORTHO05D007652 8.0e-125 451.4 356 68.0
Thhalv10011553m.g Eutrema salsugineum HOM05D006093 ORTHO05D007652 1.4e-124 450.7 285 77.2
AT1G52500 Arabidopsis thaliana HOM05D006093 ORTHO05D007652 1.8e-124 450.3 285 77.2
FAN09G4542 Fragaria x ananassa HOM05D006093 ORTHO05D007652 1.8e-124 450.3 285 76.8
VMungo1080G1109 Vigna mungo HOM05D006093 ORTHO05D007652 2.3e-124 449.9 285 75.8
arahy.Tifrunner.gnm1.ann1.5T1ZSX Arachis hypogaea HOM05D006093 ORTHO05D007652 8.8e-124 448.0 285 76.5
arahy.Tifrunner.gnm1.ann1.RDN84X Arachis hypogaea HOM05D006093 ORTHO05D007652 8.8e-124 448.0 285 76.5
QL05p032033 Quercus lobata HOM05D006093 ORTHO05D007652 8.8e-124 448.0 336 69.0
vmacro16879 Vaccinium macrocarpon HOM05D006093 ORTHO05D007652 1.5e-123 447.2 311 73.0
Gorai.011G089400 Gossypium raimondii HOM05D006093 ORTHO05D007652 2.0e-123 446.8 336 67.9
MBI15_g24195_MAGBIO Magnolia biondii HOM05D006093 ORTHO05D007652 2.0e-123 446.8 287 76.3
FvH4_6g29401 Fragaria vesca HOM05D006093 ORTHO05D007652 3.3e-123 446.0 358 65.6
ECA238G2964 Erigeron canadensis HOM05D005083 ORTHO05D006310 2.2e-122 443.4 285 75.4
Peaxi162Scf00553g00627 Petunia axillaris HOM05D006093 ORTHO05D007652 2.2e-122 443.4 316 70.3
EL10Ac9g21886 Beta vulgaris HOM05D006093 ORTHO05D007652 2.8e-122 443.0 412 64.8
FAN14G2225 Fragaria x ananassa HOM05D006093 ORTHO05D007652 2.8e-122 443.0 409 61.1
TWI12G0620 Tripterygium wilfordii HOM05D006093 ORTHO05D007652 1.1e-121 441.0 314 69.7
Cpa.g.sc167.9 Carica papaya HOM05D006093 ORTHO05D007652 4.1e-121 439.1 267 78.3
CsaV3_4G001910 Cucumis sativus L. HOM05D006093 ORTHO05D007652 7.0e-121 438.3 282 74.8
Aa31LG10G2500 Aethionema arabicum HOM05D006093 ORTHO05D007652 1.6e-120 437.2 308 70.8
CANSAT56G0666 Cannabis sativa HOM05D006093 ORTHO05D007652 7.7e-120 434.9 285 75.4
Gohir.A10G068900 Gossypium hirsutum HOM05D006093 ORTHO05D007652 1.0e-119 434.5 291 75.3
Glyma.13G366800 Glycine max HOM05D006093 ORTHO05D007652 1.3e-119 434.1 436 55.7
HPP92_003851 Vanilla planifolia HOM05D006093 ORTHO05D007652 3.8e-119 432.6 285 72.6
Sed0013008 Sechium edule HOM05D006093 ORTHO05D007652 6.5e-119 431.8 282 73.8
CDE05G1298 Ceratophyllum demersum HOM05D006093 ORTHO05D007652 1.6e-117 427.2 281 76.2
Phvul.005G179300 Phaseolus vulgaris HOM05D006093 ORTHO05D007652 6.7e-116 421.8 410 56.8
Ca_01048_v3 Cicer arietinum L. HOM05D006093 ORTHO05D007652 8.8e-116 421.4 435 54.9
unitig_62.g23594 Utricularia gibba HOM05D006093 ORTHO05D007652 1.5e-115 420.6 335 62.1
Rhsim12G0190000 Rhododendron simsii HOM05D006093 ORTHO05D007652 2.0e-115 420.2 323 66.6
DCAR_025523 Daucus carota HOM05D006093 ORTHO05D007652 2.2e-114 416.8 288 71.2
FAN05G1370 Fragaria x ananassa HOM05D006093 ORTHO05D007652 2.8e-114 416.4 286 72.0
Ah.01g020480 Amaranthus hybridus HOM05D006093 ORTHO05D007652 4.8e-114 415.6 326 66.9
Hund00502 Selenicereus undatus HOM05D006093 ORTHO05D007652 2.4e-113 413.3 256 77.3
Manes.04G110800 Manihot esculenta HOM05D006093 ORTHO05D007652 2.2e-111 406.8 286 71.0
ECA247G0880 Erigeron canadensis HOM05D006093 ORTHO05D007652 4.2e-110 402.5 286 70.3
ClCG07G012240 Citrullus lanatus HOM05D006093 ORTHO05D007652 1.0e-108 397.9 363 56.7
SGA_v2.0_scaffold5G02719 Striga asiatica HOM05D006093 ORTHO05D007652 2.3e-108 396.7 322 64.6
Os08g0304900 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 3.0e-108 396.4 283 68.2
Lsat_1_v5_gn_1_34180 Lactuca sativa HOM05D006093 ORTHO05D007652 1.2e-107 394.4 321 63.2
GSVIVG01017379001 Vitis vinifera HOM05D006093 ORTHO05D007652 1.2e-107 394.4 245 76.3
Nn8g39568 Nelumbo nucifera HOM05D006093 ORTHO05D007652 2.6e-107 393.3 260 75.8
Os06g0643600 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 2.8e-106 389.8 288 67.7
Zm00001eb275260 Zea mays HOM05D006093 ORTHO05D007652 1.8e-105 387.1 287 66.2
HanXRQChr02g0033461 Helianthus annuus HOM05D006093 ORTHO05D007652 3.1e-105 386.3 287 66.9
Nitab4.5_0003072g0060 Nicotiana tabacum HOM05D006093 ORTHO05D007652 9.1e-105 384.8 320 63.1
Psat5g303120 Pisum sativum HOM05D006093 ORTHO05D007652 9.1e-105 384.8 336 61.3
PGR102G2220 Punica granatum HOM05D006093 ORTHO05D007652 1.7e-103 380.6 285 67.4
HanXRQChr02g0033471 Helianthus annuus HOM05D006093 ORTHO05D007652 2.5e-102 376.7 288 65.6
Sabra03G0017500 Salix brachista HOM05D006093 ORTHO05D007652 3.3e-102 376.3 538 45.4
MELO3C017842.2 Cucumis melo HOM05D006093 ORTHO05D007652 2.8e-101 373.2 313 61.3
Haze_16582 Corylus avellana HOM05D006093 ORTHO05D007652 7.5e-99 365.2 236 76.3
Prupe.3G090700 Prunus persica HOM05D006093 ORTHO05D007652 2.0e-96 357.1 263 69.6
CARHR042600 Cardamine hirsuta HOM05D006093 ORTHO05D007652 1.5e-94 350.9 222 76.6
AL1G60740 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 2.5e-94 350.1 222 77.0
Sc10g0008130 Simmondsia chinensis HOM05D006093 ORTHO05D007652 4.3e-94 349.4 208 80.3
Dinv30625 Davidia involucrata HOM05D006093 ORTHO05D007652 8.0e-93 345.1 239 72.0
Actinidia08791 Actinidia chinensis HOM05D006093 ORTHO05D007652 5.8e-91 339.0 208 79.3
Pp3c23_21520 Physcomitrium patens HOM05D006093 ORTHO05D007652 1.1e-86 324.7 283 56.9
Pp3c8_24280 Physcomitrium patens HOM05D006093 ORTHO05D007652 3.7e-82 309.7 284 54.6
SHI11225 Sapria himalayana HOM05D006093 ORTHO05D007652 6.4e-82 308.9 316 52.8
Mapoly0015s0062 Marchantia polymorpha HOM05D006093 ORTHO05D007652 7.0e-81 305.4 277 53.8
Cfa001944 Carpinus fangiana HOM05D006093 ORTHO05D007652 1.2e-80 304.7 192 78.1
SMO367G0330 Selaginella moellendorffii HOM05D006093 ORTHO05D007652 5.2e-76 289.3 251 58.2
Pp3c24_20180 Physcomitrium patens HOM05D006093 ORTHO05D007652 3.2e-73 280.0 284 50.0
PSO017G4202 Papaver somniferum HOM05D006093 ORTHO05D007652 1.2e-67 261.5 166 76.5
Cre10.g428433 Chlamydomonas reinhardtii HOM05D006093 ORTHO05D007652 1.5e-67 261.2 297 46.1
CBR_g884 Chara braunii HOM05D006093 ORTHO05D007652 1.1e-62 245.0 224 51.3
Psat6g066000 Pisum sativum HOM05D006093 ORTHO05D007652 1.4e-60 238.0 157 75.2
MCO15G481 Micromonas commoda HOM05D006093 ORTHO05D007652 1.6e-53 214.5 271 42.8
GSVIVG01026354001 Vitis vinifera HOM05D006093 ORTHO05D007652 6.4e-50 202.6 113 84.1
Eucgr.L03570 Eucalyptus grandis HOM05D006093 ORTHO05D007652 3.9e-47 193.4 114 76.3
Gohir.D10G074901 Gossypium hirsutum HOM05D006093 ORTHO05D007652 1.6e-45 188.0 121 75.2
Cfa026683 Carpinus fangiana HOM05D006093 ORTHO05D007652 3.1e-44 183.7 321 33.0
Cfa001945 Carpinus fangiana HOM05D006093 ORTHO05D007652 5.3e-44 183.0 288 44.4
SEGI_24777 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 5.8e-35 152.9 103 67.0
Oeu058023.3 Olea europaea HOM05D006093 ORTHO05D005440 5.5e-33 146.4 153 55.6
AL7G45760 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 2.1e-32 144.4 101 71.3
Actinidia08958 Actinidia chinensis HOM05D006093 ORTHO05D007652 3.0e-31 140.6 77 85.7
Dinv01702 Davidia involucrata HOM05D006093 ORTHO05D007652 7.4e-30 136.0 91 70.3
Dinv21460 Davidia involucrata HOM05D006093 ORTHO05D007652 5.3e-28 129.8 77 79.2
AL1G60750 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 2.0e-22 111.3 64 82.8
CARHR042620 Cardamine hirsuta HOM05D006093 ORTHO05D007652 7.4e-22 109.4 65 78.5
SEGI_39009 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 1.3e-18 98.6 76 61.8
SGA_v2.0_scaffold72G24067 Striga asiatica HOM05D006093 ORTHO05D007652 6.1e-16 89.7 98 50.0
Medtr3g118550 Medicago truncatula HOM05D006093 ORTHO05D007652 1.8e-15 88.2 126 45.2
Thecc.09G173900 Theobroma cacao HOM05D006093 ORTHO05D007652 4.4e-14 83.6 79 54.4
Sabra14G0094900 Salix brachista HOM05D006093 ORTHO05D007652 3.7e-13 80.5 54 75.9


User provided reference genes

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