Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 2.1e-202 708.8 344 100.0
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.2e-98 363.2 233 73.0
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 3.7e-98 362.5 238 72.7
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 3.7e-98 362.5 237 72.6
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 1.1e-97 360.9 234 73.5
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 2.4e-97 359.8 237 72.2
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 4.1e-97 359.0 234 72.6
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.6e-96 357.1 238 71.0
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.6e-96 357.1 234 72.6
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.6e-96 356.3 233 72.1
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 2.6e-96 356.3 242 69.0
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 5.9e-96 355.1 238 70.6
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 3.8e-95 352.4 235 70.6
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 3.8e-95 352.4 239 69.9
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 5.0e-95 352.1 241 68.9
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 8.5e-95 351.3 243 68.3
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 1.9e-94 350.1 233 70.0
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 7.2e-94 348.2 236 70.8
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 7.2e-94 348.2 236 70.8
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 1.2e-93 347.4 236 70.3
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 1.6e-93 347.1 237 70.5
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 1.4e-92 344.0 233 69.1
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 3.0e-92 342.8 242 66.9
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 3.0e-92 342.8 235 70.2
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 1.5e-91 340.5 235 69.8
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 1.5e-91 340.5 233 70.8
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 1.5e-91 340.5 235 70.2
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 2.6e-91 339.7 239 67.4
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 3.3e-91 339.3 235 69.4
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 4.4e-91 339.0 239 70.3
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 4.4e-91 339.0 234 68.4
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 4.4e-91 339.0 235 69.8
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 7.5e-91 338.2 238 65.5
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 6.3e-90 335.1 237 67.5
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 1.4e-89 334.0 242 66.9
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 9.1e-89 331.3 243 64.6
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 1.2e-88 330.9 237 67.1
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.2e-88 330.9 249 64.7
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 7.7e-88 328.2 246 62.6
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 7.7e-88 328.2 233 65.7
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 1.3e-87 327.4 237 65.8
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.7e-87 327.0 236 65.7
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.7e-87 327.0 216 72.7
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 2.2e-87 326.6 237 65.8
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 3.8e-87 325.9 236 65.7
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 6.5e-87 325.1 236 65.7
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 6.5e-87 325.1 239 64.0
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 8.5e-87 324.7 246 64.6
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 1.1e-86 324.3 237 66.7
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 1.5e-86 323.9 235 65.1
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 4.2e-86 322.4 240 64.6
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 9.4e-86 321.2 242 64.0
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 1.2e-85 320.9 237 65.8
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 2.7e-85 319.7 237 65.0
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 8.8e-84 314.7 243 63.8
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 2.0e-83 313.5 237 62.4
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 2.6e-83 313.2 239 61.9
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 1.3e-82 310.8 242 62.4
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 1.3e-82 310.8 235 62.6
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.7e-82 310.5 251 61.8
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 2.8e-82 309.7 256 62.1
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 3.7e-82 309.3 245 62.0
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 3.7e-82 309.3 243 63.0
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 6.3e-82 308.5 242 63.2
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 1.1e-81 307.8 238 61.8
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 1.8e-81 307.0 241 64.7
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 2.4e-81 306.6 245 62.0
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 2.4e-81 306.6 241 61.8
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 3.1e-81 306.2 243 64.6
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 3.1e-81 306.2 245 62.0
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 5.4e-81 305.4 244 62.3
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 5.4e-81 305.4 244 62.3
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 1.6e-80 303.9 241 64.3
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 1.6e-80 303.9 251 58.2
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 2.0e-80 303.5 260 61.2
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 2.7e-80 303.1 242 62.0
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 4.5e-80 302.4 255 62.4
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 4.5e-80 302.4 235 62.1
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 1.3e-79 300.8 247 57.9
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 1.7e-79 300.4 245 60.8
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 2.9e-79 299.7 256 61.3
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 2.9e-79 299.7 242 62.0
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 6.5e-79 298.5 242 61.6
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 1.1e-78 297.7 239 61.1
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 1.5e-78 297.4 244 61.1
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.9e-78 297.0 236 61.9
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 2.5e-78 296.6 246 61.4
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 5.5e-78 295.4 236 59.7
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 5.5e-78 295.4 236 59.7
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 2.7e-77 293.1 246 61.4
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 3.6e-77 292.7 247 57.1
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 3.6e-77 292.7 243 60.9
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 3.6e-77 292.7 243 60.9
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 4.7e-77 292.4 228 60.5
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 8.0e-77 291.6 234 61.1
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 3.0e-76 289.7 244 56.1
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 4.0e-76 289.3 236 58.1
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 4.0e-76 289.3 224 64.7
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 5.2e-76 288.9 231 62.3
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.5e-75 287.3 202 69.3
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 2.0e-75 287.0 240 61.2
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 4.4e-75 285.8 246 59.8
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 4.4e-75 285.8 249 57.8
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 7.5e-75 285.0 233 61.8
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 7.5e-75 285.0 239 57.3
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 9.8e-75 284.6 207 65.7
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 9.8e-75 284.6 224 61.2
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 1.3e-74 284.3 238 59.7
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.7e-74 283.9 236 57.6
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 2.8e-74 283.1 235 60.0
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 2.8e-74 283.1 235 60.0
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 1.1e-73 281.2 238 59.7
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.4e-73 280.8 202 68.3
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 1.8e-73 280.4 238 58.4
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 1.8e-73 280.4 240 58.3
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 2.4e-73 280.0 238 60.1
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 3.1e-73 279.6 238 59.7
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 5.4e-73 278.9 235 60.0
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 9.2e-73 278.1 238 59.2
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 1.2e-72 277.7 238 58.8
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 1.2e-72 277.7 241 58.9
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 2.0e-72 276.9 239 59.0
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 2.0e-72 276.9 238 58.4
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 3.5e-72 276.2 248 56.5
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 3.5e-72 276.2 248 56.5
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 3.5e-72 276.2 236 58.1
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 3.5e-72 276.2 236 58.5
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 1.7e-71 273.9 283 49.1
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 1.7e-71 273.9 241 58.5
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 2.3e-71 273.5 238 58.8
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 3.8e-71 272.7 238 58.4
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 6.6e-71 271.9 238 55.9
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.9e-70 270.4 216 59.7
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 3.3e-70 269.6 238 58.4
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 3.3e-70 269.6 238 58.4
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 4.3e-70 269.2 236 56.8
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 1.8e-68 263.8 237 54.4
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 9.8e-67 258.1 242 53.3
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 1.7e-66 257.3 231 54.1
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 2.2e-66 256.9 235 57.4
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 1.6e-64 250.8 259 52.5
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 4.6e-64 249.2 243 52.3
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.3e-63 247.7 163 71.2
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 8.6e-63 245.0 223 55.6
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 1.1e-62 244.6 245 53.5
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 5.6e-62 242.3 249 48.6
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 9.5e-62 241.5 231 54.5
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 4.7e-61 239.2 210 56.2
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.3e-60 236.9 158 69.0
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 3.4e-59 233.0 247 49.4
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 3.7e-58 229.6 236 53.0
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 1.1e-57 228.0 192 56.8
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 1.4e-57 227.6 240 50.4
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 7.0e-57 225.3 246 51.6
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 3.9e-55 219.5 185 61.1
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 7.3e-54 215.3 163 62.6
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 3.6e-53 213.0 200 57.5
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 1.2e-51 208.0 163 60.7
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 3.4e-51 206.5 259 42.5
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 3.7e-50 203.0 157 61.8
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 3.5e-48 196.4 262 42.4
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 2.0e-43 180.6 129 66.7
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 5.8e-43 179.1 208 48.1
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 5.4e-41 172.6 191 49.7
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 2.0e-35 154.1 101 72.3
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 9.3e-33 145.2 116 62.1
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 2.1e-32 144.1 118 61.9
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 8.7e-31 138.7 107 64.5
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 1.9e-30 137.5 120 60.8
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 6.2e-29 132.5 146 48.6
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 6.9e-28 129.0 156 47.4
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 2.9e-26 123.6 94 60.6
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 2.4e-25 120.6 93 61.3
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 1.0e-23 115.2 166 39.2
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 1.9e-22 110.9 74 70.3
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 6.2e-21 105.9 190 33.2
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 9.0e-20 102.1 89 57.3
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 2.2e-18 97.4 83 56.6
CARHR273910 Cardamine hirsuta HOM05D003786 ORTHO05D004375 2.1e-16 90.9 80 56.2
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 1.3e-15 88.2 134 38.8
PRCOL_00003701 Prasinoderma coloniale HOM05D003786 ORTHO05D004375 1.4e-12 78.2 279 23.7
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 2.9e-10 70.5 171 27.5
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 2.9e-10 70.5 54 63.0
Zm00001eb022270 Zea mays HOM05D028996 ORTHO05D004375 8.7e-07 58.9 62 53.2
Zm00001eb030490 Zea mays HOM05D028996 ORTHO05D004375 1.9e-06 57.8 61 54.1


User provided reference genes

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