Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 7.4e-141 503.8 249 100.0
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 2.3e-126 455.7 245 90.6
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 7.5e-125 450.7 242 91.7
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 2.4e-123 445.7 232 93.5
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 7.7e-122 440.7 245 86.5
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 1.0e-121 440.3 245 87.8
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 1.7e-121 439.5 248 86.3
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 1.2e-119 433.3 245 84.9
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 1.6e-119 433.0 248 84.7
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 3.0e-118 428.7 248 84.3
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 3.0e-118 428.7 248 84.3
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 4.4e-117 424.9 246 84.6
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 4.4e-117 424.9 246 84.6
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 5.7e-117 424.5 249 83.1
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 2.0e-106 389.4 218 85.8
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 3.4e-101 372.1 235 77.0
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 8.3e-100 367.5 248 74.2
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 1.4e-99 366.7 235 75.7
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 1.6e-98 363.2 251 71.3
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 2.0e-98 362.8 234 72.2
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 1.7e-97 359.8 242 72.3
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 7.3e-96 354.4 241 69.3
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 1.7e-81 306.6 164 89.0
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 8.6e-81 304.3 236 62.3
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 8.6e-81 304.3 230 66.1
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 9.5e-80 300.8 235 62.6
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 1.6e-79 300.1 234 62.4
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 3.6e-79 298.9 235 62.1
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 2.6e-77 292.7 242 59.9
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 7.6e-77 291.2 238 60.1
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 1.7e-76 290.0 239 58.6
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 2.9e-76 289.3 236 60.2
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 2.9e-76 289.3 237 59.9
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 3.8e-76 288.9 243 59.3
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 4.9e-76 288.5 246 56.9
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 4.9e-76 288.5 238 60.5
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 6.4e-76 288.1 237 59.5
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.1e-75 287.3 238 58.8
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.2e-74 283.9 238 59.2
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 1.2e-74 283.9 239 57.3
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 2.7e-74 282.7 238 57.6
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 4.6e-74 282.0 238 58.0
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 3.9e-73 278.9 252 56.7
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 8.7e-73 277.7 237 58.2
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 8.7e-73 277.7 238 57.1
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 1.1e-72 277.3 235 57.9
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 2.5e-72 276.2 238 58.4
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 4.3e-72 275.4 239 56.9
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 4.3e-72 275.4 237 57.4
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 4.3e-72 275.4 237 57.4
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 5.6e-72 275.0 237 57.0
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 5.6e-72 275.0 237 58.6
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 9.6e-72 274.2 237 57.8
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 4.7e-71 271.9 240 55.4
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 4.7e-71 271.9 238 56.7
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 8.1e-71 271.2 235 57.4
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 1.4e-70 270.4 241 55.6
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 1.8e-70 270.0 235 56.6
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 3.1e-70 269.2 237 54.9
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 3.1e-70 269.2 237 57.0
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 4.0e-70 268.9 236 57.2
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 4.0e-70 268.9 238 58.4
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 4.0e-70 268.9 239 54.8
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 1.2e-69 267.3 237 55.3
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.2e-69 267.3 237 55.3
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 1.2e-69 267.3 237 57.4
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 1.5e-69 266.9 239 57.7
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 2.6e-69 266.2 249 55.0
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 2.6e-69 266.2 242 58.3
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 3.4e-69 265.8 238 54.2
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 4.4e-69 265.4 236 56.8
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 5.8e-69 265.0 236 57.2
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 5.8e-69 265.0 244 55.7
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 9.9e-69 264.2 244 56.1
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 1.3e-68 263.8 243 56.8
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 1.3e-68 263.8 243 57.6
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 1.7e-68 263.5 237 55.7
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 1.7e-68 263.5 237 56.1
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 1.7e-68 263.5 251 54.2
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.7e-68 263.5 235 56.6
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 2.2e-68 263.1 242 57.9
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 2.9e-68 262.7 242 53.7
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 3.8e-68 262.3 237 54.4
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 8.4e-68 261.2 235 56.2
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.9e-67 260.0 239 55.6
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.9e-67 260.0 237 53.6
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 3.2e-67 259.2 237 53.6
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 4.2e-67 258.8 243 55.6
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 5.4e-67 258.5 237 53.6
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 7.1e-67 258.1 246 56.9
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.6e-66 256.9 235 54.0
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 1.6e-66 256.9 243 56.0
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 7.8e-66 254.6 250 54.8
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 7.8e-66 254.6 244 55.3
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 1.7e-65 253.4 236 55.5
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.7e-65 253.4 235 56.2
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 1.7e-65 253.4 238 52.5
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 2.3e-65 253.1 235 53.2
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 2.3e-65 253.1 235 55.7
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 3.9e-65 252.3 237 53.6
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 6.6e-65 251.5 235 54.5
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 6.6e-65 251.5 244 54.5
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 6.6e-65 251.5 244 54.5
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 6.6e-65 251.5 233 51.1
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 8.7e-65 251.1 233 56.2
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 1.5e-64 250.4 235 54.9
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 1.9e-64 250.0 242 54.1
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 2.5e-64 249.6 244 52.0
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 3.3e-64 249.2 244 54.9
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 4.3e-64 248.8 245 54.3
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 5.6e-64 248.4 244 54.5
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 9.6e-64 247.7 237 52.7
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 9.6e-64 247.7 237 52.7
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 1.3e-63 247.3 242 54.1
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 3.6e-63 245.7 244 50.8
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 6.2e-63 245.0 238 51.3
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 6.2e-63 245.0 238 51.3
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 3.1e-62 242.7 238 50.0
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 5.3e-62 241.9 218 57.3
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 6.9e-62 241.5 243 51.9
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 6.9e-62 241.5 243 51.9
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 9.0e-62 241.1 224 54.0
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 9.0e-62 241.1 242 53.3
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.0e-61 240.0 238 50.0
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 4.5e-61 238.8 236 48.3
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 7.6e-61 238.0 235 49.4
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 7.6e-61 238.0 247 52.6
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 9.9e-61 237.7 234 52.6
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 2.2e-60 236.5 243 49.8
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 3.8e-60 235.7 248 48.4
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.8e-60 235.7 203 58.1
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 4.9e-60 235.3 203 58.1
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 6.4e-60 235.0 237 51.9
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 3.2e-59 232.6 240 50.0
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 2.7e-58 229.6 204 56.9
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 3.5e-58 229.2 234 48.7
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 4.6e-58 228.8 248 47.2
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 4.6e-58 228.8 244 50.0
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 1.8e-57 226.9 239 50.6
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 8.7e-57 224.6 239 49.8
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 3.3e-56 222.6 237 48.5
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 5.6e-56 221.9 218 51.4
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 3.4e-53 212.6 235 50.2
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 2.2e-52 209.9 226 49.6
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 1.1e-51 207.6 256 45.7
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 1.1e-51 207.6 250 46.4
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 4.2e-51 205.7 244 47.1
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 9.3e-51 204.5 200 54.0
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 1.2e-50 204.1 190 52.1
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 7.9e-50 201.4 249 45.4
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 2.5e-48 196.4 247 47.0
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 1.1e-46 191.0 243 44.4
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 3.1e-46 189.5 163 57.1
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 4.5e-45 185.7 268 39.2
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 7.6e-45 184.9 240 45.0
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 1.0e-44 184.5 257 41.2
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 1.9e-43 180.3 173 53.2
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 1.9e-43 180.3 169 54.4
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 7.1e-43 178.3 159 54.7
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 1.2e-42 177.6 185 53.0
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 2.3e-41 173.3 152 55.3
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 5.3e-38 162.2 203 45.8
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 5.9e-37 158.7 134 57.5
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 2.2e-36 156.8 89 89.9
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 3.8e-36 156.0 200 47.5
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.4e-35 154.1 187 44.9
CARHR273910 Cardamine hirsuta HOM05D003786 ORTHO05D004375 3.3e-32 142.9 80 88.8
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 3.3e-32 142.9 93 74.2
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 8.2e-31 138.3 132 56.8
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 1.2e-29 134.4 118 57.6
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 4.8e-23 112.5 125 48.8
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.4e-22 110.9 104 54.8
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 4.1e-22 109.4 169 41.4
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 2.0e-21 107.1 141 42.6
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 2.9e-20 103.2 191 34.0
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 1.1e-19 101.3 74 67.6
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 2.7e-18 96.7 77 51.9
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.0e-17 94.7 93 49.5
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 2.3e-17 93.6 118 44.9
PRCOL_00003701 Prasinoderma coloniale HOM05D003786 ORTHO05D004375 2.8e-15 86.7 159 32.1
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 1.4e-14 84.3 134 38.1
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 5.2e-09 65.9 101 34.7
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 3.3e-08 63.2 48 60.4


User provided reference genes

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