Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 2.0e-109 399.4 255 100.0
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 1.8e-89 333.2 260 88.1
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 4.8e-87 325.1 260 81.2
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 1.3e-84 317.0 264 83.7
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 1.5e-83 313.5 260 79.6
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 6.8e-81 304.7 258 79.1
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 6.8e-81 304.7 258 79.1
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 8.3e-79 297.7 201 93.0
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 1.8e-78 296.6 265 76.2
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 2.4e-78 296.2 280 68.6
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 2.4e-78 296.2 280 68.9
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 2.4e-78 296.2 280 68.6
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 1.2e-77 293.9 252 78.2
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 5.9e-77 291.6 265 75.5
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 1.0e-76 290.8 235 77.4
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 3.8e-76 288.9 150 99.3
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 8.6e-76 287.7 209 80.4
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 2.5e-75 286.2 203 77.3
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 6.1e-74 281.6 150 96.0
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 8.0e-74 281.2 237 72.6
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 3.0e-73 279.3 284 64.1
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 3.0e-73 279.3 284 64.1
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 4.0e-73 278.9 268 78.0
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 6.8e-73 278.1 172 86.6
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 2.6e-72 276.2 175 85.1
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 2.6e-72 276.2 262 68.7
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 4.4e-72 275.4 226 79.6
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 7.5e-72 274.6 257 71.2
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 2.2e-71 273.1 218 72.9
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 2.8e-71 272.7 150 93.3
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 2.8e-71 272.7 150 93.3
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 4.9e-71 271.9 252 67.9
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 4.9e-71 271.9 248 72.2
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 4.9e-71 271.9 150 92.0
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 4.9e-71 271.9 150 92.7
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 8.3e-71 271.2 254 65.0
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 1.1e-70 270.8 247 65.6
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 1.1e-70 270.8 251 70.5
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 2.4e-70 269.6 150 92.0
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 3.2e-70 269.2 247 68.8
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 4.1e-70 268.9 238 73.1
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 5.4e-70 268.5 242 69.8
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 5.4e-70 268.5 232 78.4
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 5.4e-70 268.5 226 78.3
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 5.4e-70 268.5 247 68.0
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 5.4e-70 268.5 150 91.3
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 5.4e-70 268.5 238 66.8
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 9.2e-70 267.7 244 66.8
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 9.2e-70 267.7 150 89.3
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 9.2e-70 267.7 263 69.2
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 9.2e-70 267.7 150 90.7
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 1.2e-69 267.3 254 69.7
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 1.6e-69 266.9 172 79.7
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 1.6e-69 266.9 172 79.7
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 1.6e-69 266.9 223 74.0
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 2.0e-69 266.5 150 90.0
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 2.0e-69 266.5 220 69.5
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 2.0e-69 266.5 253 62.8
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 3.5e-69 265.8 150 90.0
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 3.5e-69 265.8 150 91.3
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 4.5e-69 265.4 216 69.0
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 4.5e-69 265.4 263 67.7
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 5.9e-69 265.0 145 94.5
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 1.7e-68 263.5 238 66.8
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 1.7e-68 263.5 242 71.9
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 2.3e-68 263.1 174 79.9
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 2.9e-68 262.7 208 80.8
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 3.9e-68 262.3 151 90.1
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 3.9e-68 262.3 277 68.6
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 3.9e-68 262.3 208 76.9
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 3.9e-68 262.3 167 83.2
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 5.0e-68 261.9 208 72.1
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 6.6e-68 261.5 178 79.2
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 8.6e-68 261.2 227 71.4
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 8.6e-68 261.2 227 71.4
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 8.6e-68 261.2 152 89.5
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 1.1e-67 260.8 271 67.9
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.1e-67 260.8 271 67.9
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 1.1e-67 260.8 233 66.5
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 2.5e-67 259.6 258 69.4
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 2.5e-67 259.6 200 79.5
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 2.5e-67 259.6 233 66.5
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 3.3e-67 259.2 151 90.1
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 3.3e-67 259.2 150 90.7
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 3.3e-67 259.2 150 90.7
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 4.3e-67 258.8 185 78.9
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 4.3e-67 258.8 217 76.5
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 5.6e-67 258.5 227 72.2
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 9.5e-67 257.7 251 69.7
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 1.6e-66 256.9 196 71.9
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 1.6e-66 256.9 257 61.1
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 4.7e-66 255.4 151 88.1
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 4.7e-66 255.4 182 83.0
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 4.7e-66 255.4 150 88.7
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 6.1e-66 255.0 214 70.6
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 8.0e-66 254.6 258 63.2
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 1.0e-65 254.2 260 62.7
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.4e-65 253.8 243 67.9
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 1.4e-65 253.8 150 87.3
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 1.4e-65 253.8 152 86.2
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 4.0e-65 252.3 151 86.1
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 4.0e-65 252.3 260 62.7
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 4.0e-65 252.3 156 85.3
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 4.0e-65 252.3 231 68.8
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 4.0e-65 252.3 231 68.8
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 5.2e-65 251.9 153 85.6
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 5.2e-65 251.9 153 85.6
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 6.8e-65 251.5 274 60.2
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 2.0e-64 250.0 208 71.2
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 2.6e-64 249.6 274 63.5
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 2.6e-64 249.6 165 80.0
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 2.6e-64 249.6 152 84.9
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 3.4e-64 249.2 240 66.2
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 3.4e-64 249.2 150 86.7
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 4.4e-64 248.8 243 68.7
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 9.8e-64 247.7 245 65.3
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 1.7e-63 246.9 208 67.3
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 1.7e-63 246.9 255 69.8
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 2.9e-63 246.1 270 60.0
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 3.7e-63 245.7 242 65.7
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 1.1e-62 244.2 153 81.7
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 4.1e-62 242.3 150 83.3
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 9.2e-62 241.1 144 87.5
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 2.0e-61 240.0 151 83.4
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 6.0e-61 238.4 239 71.1
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 1.7e-60 236.9 223 69.5
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 3.0e-60 236.1 130 93.1
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 3.0e-60 236.1 238 68.5
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 5.6e-59 231.9 206 71.4
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 7.3e-59 231.5 142 84.5
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 4.0e-57 225.7 221 66.5
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 2.0e-56 223.4 250 65.6
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 3.4e-56 222.6 150 78.0
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 2.2e-55 219.9 151 76.8
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 2.9e-55 219.5 180 70.0
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 8.3e-55 218.0 236 60.2
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 8.3e-55 218.0 236 60.2
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 1.9e-54 216.9 136 82.4
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 1.7e-52 210.3 120 90.8
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 3.9e-52 209.1 219 57.1
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 2.5e-51 206.5 119 86.6
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 2.6e-48 196.4 246 61.0
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 3.2e-46 189.5 180 62.8
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 4.1e-46 189.1 146 66.4
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 1.9e-43 180.3 217 55.3
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 1.6e-42 177.2 150 64.0
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 4.7e-42 175.6 124 75.8
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 1.1e-41 174.5 151 64.9
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 7.1e-38 161.8 150 61.3
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 4.3e-35 152.5 109 75.2
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 9.6e-35 151.4 202 52.0
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 1.3e-34 151.0 94 80.9
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.7e-29 133.3 146 52.7
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.7e-28 130.6 209 45.0
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.7e-28 130.6 209 45.0
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.9e-27 127.1 207 44.0
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 4.8e-26 122.5 138 52.9
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.2e-21 107.8 140 50.0
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 3.3e-19 99.8 147 55.8
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 8.1e-18 95.1 53 84.9
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 2.1e-13 80.5 50 78.0
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 2.7e-13 80.1 131 52.7
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 7.9e-13 78.6 40 95.0
EL10Ac1g00433 Beta vulgaris HOM05D004370 ORTHO05D005084 6.5e-07 58.9 67 55.2


User provided reference genes

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