Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0001s0973 Capsella rubella HOM05D000904 ORTHO05D006931 4.7e-211 737.6 385 100.0
AT1G10320 Arabidopsis thaliana HOM05D000904 ORTHO05D006931 2.3e-117 426.4 388 66.2
AL1G21050 Arabidopsis lyrata HOM05D000904 ORTHO05D006931 2.8e-115 419.5 399 65.2
Sp1g08920 Schrenkiella parvula HOM05D000904 ORTHO05D006931 1.4e-98 364.0 435 56.8
CARHR010450 Cardamine hirsuta HOM05D000904 ORTHO05D006931 3.2e-98 362.8 317 66.2
A08p34030 Brassica napus HOM05D000904 ORTHO05D006931 9.9e-84 314.7 340 60.0
BraA08t35316Z Brassica rapa HOM05D000904 ORTHO05D005281 9.9e-84 314.7 340 60.0
BolC8t48998H Brassica oleracea HOM05D000904 ORTHO05D005281 5.1e-80 302.4 300 61.0
BcaNung05166 Brassica carinata HOM05D000904 ORTHO05D006931 1.6e-78 297.4 299 60.5
C08p13580 Brassica napus HOM05D000904 ORTHO05D006931 1.6e-78 297.4 299 60.5
BcaNung05228 Brassica carinata HOM05D000904 ORTHO05D006931 1.9e-71 273.9 308 56.8
A06p06970 Brassica napus HOM05D000904 ORTHO05D006931 7.3e-71 271.9 241 64.7
Thhalv10009354m.g Eutrema salsugineum HOM05D000904 ORTHO05D006931 2.1e-70 270.4 265 61.5
BcaC05g24900 Brassica carinata HOM05D000904 ORTHO05D006931 1.8e-61 240.7 281 55.5
Aa31LG1G4600 Aethionema arabicum HOM05D000904 ORTHO05D006931 4.6e-49 199.5 433 40.9
THA.LOC104810192 Tarenaya hassleriana HOM05D000904 ORTHO05D006931 1.9e-42 177.6 412 38.8
COL.COLO4_22855 Corchorus olitorius HOM05D000904 ORTHO05D006931 2.1e-25 120.9 174 45.4
arahy.Tifrunner.gnm1.ann1.AE80VE Arachis hypogaea HOM05D000904 ORTHO05D006931 1.0e-24 118.6 284 36.6
RcHm_v2.0_Chr6g0272531 Rosa chinensis HOM05D000904 ORTHO05D006931 1.4e-24 118.2 211 38.9
RcHm_v2.0_Chr7g0221391 Rosa chinensis HOM05D000904 ORTHO05D006931 1.4e-24 118.2 157 43.3
ClCG10G007430 Citrullus lanatus HOM05D000904 ORTHO05D006931 2.3e-24 117.5 150 48.0
Cfa004448 Carpinus fangiana HOM05D000904 ORTHO05D006931 3.9e-24 116.7 219 41.1
GSVIVG01023150001 Vitis vinifera HOM05D000904 ORTHO05D006931 6.7e-24 115.9 217 41.0
Ciclev10003415m.g Citrus clementina HOM05D000904 ORTHO05D006931 8.8e-24 115.5 134 48.5
Dinv29628 Davidia involucrata HOM05D000904 ORTHO05D006931 1.1e-23 115.2 212 40.1
Cpa.g.sc173.41 Carica papaya HOM05D000904 ORTHO05D006931 2.0e-23 114.4 231 40.3
Prupe.1G585000 Prunus persica HOM05D000904 ORTHO05D006931 4.4e-23 113.2 203 40.4
CiPaw.05G001900 Carya illinoinensis HOM05D000904 ORTHO05D006931 5.7e-23 112.8 220 38.2
Duzib160G0493 Durio zibethinus HOM05D000904 ORTHO05D006931 5.7e-23 112.8 143 49.0
Ciclev10024033m.g Citrus clementina HOM05D000904 ORTHO05D006931 2.2e-22 110.9 139 47.5
MELO3C016469.2 Cucumis melo HOM05D000904 ORTHO05D006931 2.2e-22 110.9 160 43.1
Phvul.006G221300 Phaseolus vulgaris HOM05D000904 ORTHO05D006931 2.8e-22 110.5 151 47.0
Glyma.15G244700 Glycine max HOM05D000904 ORTHO05D006931 4.8e-22 109.8 87 59.8
Haze_09988 Corylus avellana HOM05D000904 ORTHO05D006931 6.3e-22 109.4 218 39.0
Medtr2g005450 Medicago truncatula HOM05D000904 ORTHO05D006931 1.1e-21 108.6 309 33.0
Lsat_1_v5_gn_9_121820 Lactuca sativa HOM05D000904 ORTHO05D006931 3.1e-21 107.1 185 39.5
arahy.Tifrunner.gnm1.ann1.7BJ6UQ Arachis hypogaea HOM05D000904 ORTHO05D006931 4.1e-21 106.7 246 34.6
Ca_00027_v3 Cicer arietinum L. HOM05D000904 ORTHO05D006931 4.1e-21 106.7 251 35.5
MD05G1263000 Malus domestica HOM05D000904 ORTHO05D006931 4.1e-21 106.7 76 63.2
VMungo0540G1910 Vigna mungo HOM05D000904 ORTHO05D006931 4.1e-21 106.7 279 36.6
Cc02_g23540 Coffea canephora HOM05D000904 ORTHO05D006931 9.1e-21 105.5 316 31.6
QL02p103277 Quercus lobata HOM05D000904 ORTHO05D006931 9.1e-21 105.5 245 36.3
Atru.chr3.2070 Acer truncatum HOM05D000904 ORTHO05D006931 1.2e-20 105.1 313 34.2
Ciclev10010745m.g Citrus clementina HOM05D000904 ORTHO05D006931 1.6e-20 104.8 128 47.7
Glyma.08G162800 Glycine max HOM05D000904 ORTHO05D006931 1.7e-19 101.3 272 33.1
HanXRQChr12g0381671 Helianthus annuus HOM05D000904 ORTHO05D006931 1.7e-19 101.3 335 32.5
arahy.Tifrunner.gnm1.ann1.V0D4VX Arachis hypogaea HOM05D000904 ORTHO05D006931 2.2e-19 100.9 279 32.6
SGA_v2.0_scaffold131G34405 Striga asiatica HOM05D000904 ORTHO05D006931 2.2e-19 100.9 282 33.0
PGSC0003DMG400020705 Solanum tuberosum HOM05D000904 ORTHO05D006931 3.8e-19 100.1 331 33.8
Psat1g223160 Pisum sativum HOM05D000904 ORTHO05D006931 1.1e-18 98.6 327 32.1
FvH4_5g28020 Fragaria vesca HOM05D000904 ORTHO05D006931 1.5e-18 98.2 382 30.6
Migut.B00725 Erythranthe guttata HOM05D000904 ORTHO05D006931 9.4e-18 95.5 315 34.0
Gohir.A03G081600 Gossypium hirsutum HOM05D000904 ORTHO05D006931 2.7e-17 94.0 369 30.9
Sc06g0007800 Simmondsia chinensis HOM05D000904 ORTHO05D006931 3.6e-17 93.6 364 30.8
Gohir.D02G105700 Gossypium hirsutum HOM05D000904 ORTHO05D006931 8.0e-17 92.4 371 31.0
Lj5g0025119 Lotus japonicus HOM05D000904 ORTHO05D006931 1.8e-16 91.3 407 30.5
HPP92_011424 Vanilla planifolia HOM05D000904 ORTHO05D006931 1.8e-16 91.3 213 37.6
Pp3c3_25240 Physcomitrium patens HOM05D000904 ORTHO05D006931 1.2e-15 88.6 61 59.0
FAN18G0255 Fragaria x ananassa HOM05D000904 ORTHO05D006931 1.5e-15 88.2 414 28.3
Os02g0557500 Oryza sativa ssp. japonica HOM05D000904 ORTHO05D006931 1.5e-15 88.2 358 30.4
Ciclev10029935m.g Citrus clementina HOM05D000904 ORTHO05D006931 2.0e-15 87.8 57 68.4
Nn5g27250 Nelumbo nucifera HOM05D000904 ORTHO05D006931 2.0e-15 87.8 431 28.1
Aqoxy6G00043 Aquilegia oxysepala HOM05D000904 ORTHO05D006931 4.4e-15 86.7 368 28.0
Solyc01g103090.4 Solanum lycopersicum HOM05D000904 ORTHO05D006931 4.4e-15 86.7 422 31.3
Sopen01g045500 Solanum pennellii HOM05D000904 ORTHO05D006931 9.7e-15 85.5 414 30.7
Lj5A282T78 Lonicera japonica HOM05D000904 ORTHO05D006931 1.3e-14 85.1 402 30.1
PSO421G0485 Papaver somniferum HOM05D000904 ORTHO05D006931 1.3e-14 85.1 293 33.4
MD15G1442300 Malus domestica HOM05D000904 ORTHO05D006931 3.7e-14 83.6 382 31.7
Nitab4.5_0008306g0010 Nicotiana tabacum HOM05D000904 ORTHO05D006931 3.7e-14 83.6 386 29.5
Oeu043612.1 Olea europaea HOM05D000904 ORTHO05D006931 3.7e-14 83.6 388 28.4
Ciclev10013954m.g Citrus clementina HOM05D000904 ORTHO05D006931 4.8e-14 83.2 85 50.6
Eucgr.G00080 Eucalyptus grandis HOM05D000904 ORTHO05D006931 6.3e-14 82.8 305 31.8
Peaxi162Scf00011g01832 Petunia axillaris HOM05D000904 ORTHO05D006931 6.3e-14 82.8 397 28.2
Gorai.005G120100 Gossypium raimondii HOM05D000904 ORTHO05D006931 8.2e-14 82.4 366 29.2
TPR.G2096 Trifolium pratense HOM05D000904 ORTHO05D006931 8.2e-14 82.4 426 30.3
Atru.chr6.324 Acer truncatum HOM05D000904 ORTHO05D006931 1.1e-13 82.0 353 30.6
Lalb_Chr20g0123821 Lupinus albus HOM05D000904 ORTHO05D006931 1.1e-13 82.0 307 29.6
Nitab4.5_0004668g0060 Nicotiana tabacum HOM05D000904 ORTHO05D006931 1.1e-13 82.0 410 31.0
Manes.10G111800 Manihot esculenta HOM05D000904 ORTHO05D006931 1.8e-13 81.3 397 28.5
HPP92_011434 Vanilla planifolia HOM05D000904 ORTHO05D006931 1.8e-13 81.3 305 30.8
AUR62033228 Chenopodium quinoa HOM05D000904 ORTHO05D006931 7.0e-13 79.3 389 30.8
AUR62021311 Chenopodium quinoa HOM05D000904 ORTHO05D006931 9.1e-13 79.0 379 31.4
AUR62043443 Chenopodium quinoa HOM05D000904 ORTHO05D006931 9.1e-13 79.0 422 29.9
PGR042G3242 Punica granatum HOM05D000904 ORTHO05D006931 1.2e-12 78.6 148 38.5
ECA240G4408 Erigeron canadensis HOM05D000904 ORTHO05D006931 3.5e-12 77.0 398 29.1
PSO063G1559 Papaver somniferum HOM05D000904 ORTHO05D006931 3.5e-12 77.0 369 30.1
ATR1089G094 Amborella trichopoda HOM05D000904 ORTHO05D006931 4.5e-12 76.6 322 33.5
Sed0005680 Sechium edule HOM05D000904 ORTHO05D006931 5.9e-12 76.3 397 30.0
Zm00001eb243910 Zea mays HOM05D000904 ORTHO05D006931 7.7e-12 75.9 392 29.8
AagrBONN_evm.TU.Sc2ySwM_228.1260 Anthoceros agrestis HOM05D000904 ORTHO05D006931 2.2e-11 74.3 49 57.1
CSS0030434 Camellia sinensis var. sinensis HOM05D000904 ORTHO05D006931 2.2e-11 74.3 402 28.6
CANSAT01G3012 Cannabis sativa HOM05D000904 ORTHO05D006931 2.2e-11 74.3 440 28.2
CAN.G855.47 Capsicum annuum HOM05D000904 ORTHO05D006931 2.2e-11 74.3 392 29.3
Hund00892 Selenicereus undatus HOM05D000904 ORTHO05D006931 2.9e-11 73.9 364 29.7
vmacro19831 Vaccinium macrocarpon HOM05D000904 ORTHO05D006931 3.8e-11 73.6 415 30.1
CsaV3_3G006640 Cucumis sativus L. HOM05D000904 ORTHO05D006931 6.5e-11 72.8 397 28.5
TWI59G0191 Tripterygium wilfordii HOM05D000904 ORTHO05D006931 1.1e-10 72.0 402 29.4
DCAR_001720 Daucus carota HOM05D000904 ORTHO05D006931 1.9e-10 71.2 404 29.5
TAR628G1213 Trochodendron aralioides HOM05D000904 ORTHO05D006931 2.5e-10 70.9 423 29.3
C05p08470 Brassica napus HOM05D000904 ORTHO05D006931 7.2e-10 69.3 89 49.4
BolC5t29598H Brassica oleracea HOM05D000904 ORTHO05D033438 7.2e-10 69.3 66 66.7
Potri.004G228600 Populus trichocarpa HOM05D000904 ORTHO05D006931 7.2e-10 69.3 411 29.9
SEGI_25881 Sequoiadendron giganteum HOM05D000904 ORTHO05D006931 9.4e-10 68.9 391 28.9
C05p08480 Brassica napus HOM05D000904 ORTHO05D033438 8.0e-09 65.9 66 65.2
Mapoly0079s0042 Marchantia polymorpha HOM05D000904 ORTHO05D006931 1.0e-08 65.5 348 26.1
Actinidia26193 Actinidia chinensis HOM05D000904 ORTHO05D006931 2.3e-08 64.3 403 27.0
unitig_578.g15961 Utricularia gibba HOM05D000904 ORTHO05D006931 4.4e-07 60.1 248 29.8


User provided reference genes

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