Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_30116_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 9.5e-206 719.9 360 100.0
Psat1g039480 Pisum sativum HOM05D005037 ORTHO05D006274 1.2e-192 676.4 360 92.2
TPR.G31447 Trifolium pratense HOM05D005037 ORTHO05D006274 3.0e-191 671.8 360 93.1
Medtr6g085170 Medicago truncatula HOM05D005037 ORTHO05D006274 3.9e-191 671.4 360 92.8
Lalb_Chr02g0149921 Lupinus albus HOM05D005037 ORTHO05D006274 6.0e-184 647.5 361 88.9
Lalb_Chr21g0311851 Lupinus albus HOM05D005037 ORTHO05D006274 1.3e-183 646.4 360 88.6
VMungo0540G1405 Vigna mungo HOM05D005037 ORTHO05D006274 4.0e-180 634.8 360 86.4
Phvul.006G102500 Phaseolus vulgaris HOM05D005037 ORTHO05D006274 9.3e-177 623.6 360 85.3
Lj1g0018953 Lotus japonicus HOM05D005037 ORTHO05D006274 2.7e-176 622.1 360 85.6
Lj4g0018852 Lotus japonicus HOM05D005037 ORTHO05D006274 4.6e-176 621.3 360 85.3
arahy.Tifrunner.gnm1.ann1.HCD3KF Arachis hypogaea HOM05D005037 ORTHO05D006274 6.7e-175 617.5 362 84.3
arahy.Tifrunner.gnm1.ann1.E7XDIB Arachis hypogaea HOM05D005037 ORTHO05D006274 1.1e-174 616.7 362 83.7
arahy.Tifrunner.gnm1.ann1.RY8QGI Arachis hypogaea HOM05D005037 ORTHO05D006274 1.6e-173 612.8 362 84.0
Glyma.14G119400 Glycine max HOM05D005037 ORTHO05D006274 1.3e-167 593.2 360 81.4
Ca_25512_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 6.7e-167 590.9 302 98.0
Glyma.11G142700 Glycine max HOM05D005037 ORTHO05D006274 4.9e-162 574.7 360 80.0
Eucgr.G02653 Eucalyptus grandis HOM05D005037 ORTHO05D006274 1.1e-140 503.8 360 68.9
Ciclev10001639m.g Citrus clementina HOM05D005037 ORTHO05D006274 1.8e-140 503.1 360 68.3
TAR381G0890 Trochodendron aralioides HOM05D005037 ORTHO05D006274 1.2e-139 500.4 360 68.6
PGR142G4097 Punica granatum HOM05D005037 ORTHO05D006274 3.8e-138 495.4 360 68.1
Nn5g28553 Nelumbo nucifera HOM05D005037 ORTHO05D006274 1.5e-137 493.4 360 68.9
Cc10_g13130 Coffea canephora HOM05D005037 ORTHO05D006274 2.5e-137 492.7 360 67.5
Hund17388 Selenicereus undatus HOM05D005037 ORTHO05D006274 3.2e-137 492.3 362 68.2
Manes.02G173400 Manihot esculenta HOM05D005037 ORTHO05D006274 4.2e-137 491.9 360 66.7
Nitab4.5_0000174g0240 Nicotiana tabacum HOM05D005037 ORTHO05D006274 1.2e-136 490.3 375 66.4
TWI32G0322 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 1.2e-136 490.3 361 67.9
Aqoxy6G00356 Aquilegia oxysepala HOM05D005037 ORTHO05D006274 2.1e-136 489.6 360 68.1
CiPaw.16G018700 Carya illinoinensis HOM05D005037 ORTHO05D006274 2.7e-136 489.2 360 68.3
Sc02g0004500 Simmondsia chinensis HOM05D005037 ORTHO05D006274 2.7e-136 489.2 362 67.7
GSVIVG01010010001 Vitis vinifera HOM05D005037 ORTHO05D006274 3.6e-136 488.8 361 67.0
Potri.002G073200 Populus trichocarpa HOM05D005037 ORTHO05D006274 6.1e-136 488.0 360 66.4
Atru.chr13.1666 Acer truncatum HOM05D005037 ORTHO05D006274 8.0e-136 487.6 360 67.2
Thecc.08G141200 Theobroma cacao HOM05D005037 ORTHO05D006274 8.0e-136 487.6 371 65.5
PGSC0003DMG400024852 Solanum tuberosum HOM05D005037 ORTHO05D006274 1.0e-135 487.3 374 66.0
Gohir.D02G074100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 1.4e-135 486.9 372 66.7
Peaxi162Scf00066g01930 Petunia axillaris HOM05D005037 ORTHO05D006274 1.4e-135 486.9 375 65.9
Actinidia16585 Actinidia chinensis HOM05D005037 ORTHO05D006274 1.8e-135 486.5 360 66.4
Duzib041G0013 Durio zibethinus HOM05D005037 ORTHO05D006274 2.3e-135 486.1 370 65.1
Oeu002392.1 Olea europaea HOM05D005037 ORTHO05D006274 2.3e-135 486.1 360 66.7
SalBow7G3864 Salvia bowleyana HOM05D005037 ORTHO05D006274 2.3e-135 486.1 360 66.4
Haze_17689 Corylus avellana HOM05D005037 ORTHO05D006274 5.2e-135 485.0 363 66.7
EL10Ac1g01450 Beta vulgaris HOM05D005037 ORTHO05D006274 8.8e-135 484.2 367 66.5
Migut.C01102 Erythranthe guttata HOM05D005037 ORTHO05D006274 1.1e-134 483.8 363 65.8
Prupe.8G016400 Prunus persica HOM05D005037 ORTHO05D006274 1.1e-134 483.8 381 64.3
Gohir.A02G068100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 1.5e-134 483.4 372 66.1
Nitab4.5_0002972g0050 Nicotiana tabacum HOM05D005037 ORTHO05D006274 2.0e-134 483.0 375 66.1
MSTRG.1382 Avicennia marina HOM05D005037 ORTHO05D006274 2.6e-134 482.6 360 66.7
MD05G1011400 Malus domestica HOM05D005037 ORTHO05D006274 3.3e-134 482.3 381 64.3
EL10Ac4g08872 Beta vulgaris HOM05D005037 ORTHO05D006274 4.4e-134 481.9 367 66.2
Gorai.005G083500 Gossypium raimondii HOM05D005037 ORTHO05D006274 4.4e-134 481.9 373 66.5
DCAR_015244 Daucus carota HOM05D005037 ORTHO05D006274 9.7e-134 480.7 368 64.4
QL09p029039 Quercus lobata HOM05D005037 ORTHO05D006274 2.2e-133 479.6 362 66.9
BolC5t32377H Brassica oleracea HOM05D005037 ORTHO05D006274 1.8e-132 476.5 367 65.7
Lsat_1_v5_gn_1_9740 Lactuca sativa HOM05D005037 ORTHO05D006274 3.1e-132 475.7 369 65.3
Sabra05G0142600 Salix brachista HOM05D005037 ORTHO05D006274 3.1e-132 475.7 361 66.2
BcaC05g27657 Brassica carinata HOM05D005037 ORTHO05D006274 7.0e-132 474.6 367 65.9
C05p36450 Brassica napus HOM05D005037 ORTHO05D006274 9.1e-132 474.2 367 65.9
Duzib116G0940 Durio zibethinus HOM05D005037 ORTHO05D006274 9.1e-132 474.2 371 65.0
DCAR_019815 Daucus carota HOM05D005037 ORTHO05D006274 2.0e-131 473.0 368 63.9
A05p21790 Brassica napus HOM05D005037 ORTHO05D006274 4.5e-131 471.9 367 65.1
BraA05t21100Z Brassica rapa HOM05D005037 ORTHO05D006274 4.5e-131 471.9 367 65.1
Potri.005G186700 Populus trichocarpa HOM05D005037 ORTHO05D006274 4.5e-131 471.9 361 64.3
CANSAT54G1160 Cannabis sativa HOM05D005037 ORTHO05D006274 5.9e-131 471.5 367 66.2
MELO3C010584.2 Cucumis melo HOM05D005037 ORTHO05D006274 1.0e-130 470.7 365 65.8
Sopen04g026520 Solanum pennellii HOM05D005037 ORTHO05D006274 1.3e-130 470.3 374 63.4
Cpa.g.sc13.102 Carica papaya HOM05D005037 ORTHO05D006274 1.7e-130 469.9 375 62.4
Thhalv10011594m.g Eutrema salsugineum HOM05D005037 ORTHO05D006274 3.8e-130 468.8 367 64.9
CsaV3_6G035600 Cucumis sativus L. HOM05D005037 ORTHO05D006274 6.5e-130 468.0 365 65.2
Sed0001170 Sechium edule HOM05D005037 ORTHO05D006274 6.5e-130 468.0 363 65.8
AL1G51980 Arabidopsis lyrata HOM05D005037 ORTHO05D006274 8.5e-130 467.6 372 63.4
Solyc04g064570.3 Solanum lycopersicum HOM05D005037 ORTHO05D006274 8.5e-130 467.6 374 62.8
TWI60G0144 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 8.5e-130 467.6 366 65.3
CAN.G657.3 Capsicum annuum HOM05D005037 ORTHO05D006274 1.1e-129 467.2 367 64.9
Sp1g33080 Schrenkiella parvula HOM05D005037 ORTHO05D006274 1.1e-129 467.2 366 64.5
vmacro08710 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 1.1e-129 467.2 362 65.2
Carub.0001s3480 Capsella rubella HOM05D005037 ORTHO05D006274 1.5e-129 466.8 372 62.6
AUR62027497 Chenopodium quinoa HOM05D005037 ORTHO05D006274 2.5e-129 466.1 362 66.0
ClCG08G002740 Citrullus lanatus HOM05D005037 ORTHO05D006274 4.2e-129 465.3 365 64.7
BcaB02g11416 Brassica carinata HOM05D005037 ORTHO05D006274 5.5e-129 464.9 367 65.1
A10p07730 Brassica napus HOM05D005037 ORTHO05D006274 5.5e-129 464.9 366 63.9
BraSC36t46032Z Brassica rapa HOM05D005037 ORTHO05D006274 5.5e-129 464.9 366 63.9
AT1G43860 Arabidopsis thaliana HOM05D005037 ORTHO05D006274 7.2e-129 464.5 372 62.6
FvH4_2g15010 Fragaria vesca HOM05D005037 ORTHO05D006274 9.4e-129 464.2 380 61.8
CARHR035400 Cardamine hirsuta HOM05D005037 ORTHO05D006274 1.2e-128 463.8 373 62.5
Ah.10g032080 Amaranthus hybridus HOM05D005037 ORTHO05D006274 2.1e-128 463.0 362 65.2
Rhsim03G0093500 Rhododendron simsii HOM05D005037 ORTHO05D006274 4.7e-128 461.8 363 64.5
ATR1136G011 Amborella trichopoda HOM05D005037 ORTHO05D006274 6.1e-128 461.5 362 64.1
AUR62033983 Chenopodium quinoa HOM05D005037 ORTHO05D006274 6.1e-128 461.5 362 65.7
ECA233G3664 Erigeron canadensis HOM05D005037 ORTHO05D006274 6.1e-128 461.5 356 64.9
RcHm_v2.0_Chr6g0277561 Rosa chinensis HOM05D005037 ORTHO05D006274 1.4e-127 460.3 368 63.3
BcaB07g33972 Brassica carinata HOM05D005037 ORTHO05D006274 1.8e-127 459.9 366 63.9
THA.LOC104798858 Tarenaya hassleriana HOM05D005037 ORTHO05D006274 2.3e-127 459.5 379 62.0
HanXRQChr04g0109491 Helianthus annuus HOM05D005037 ORTHO05D006274 5.2e-127 458.4 360 65.0
FAN24G2486 Fragaria x ananassa HOM05D005037 ORTHO05D006274 2.0e-126 456.4 383 61.6
Aa31LG6G9500 Aethionema arabicum HOM05D005037 ORTHO05D006274 3.4e-126 455.7 384 61.7
CDE02G2089 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 1.3e-125 453.8 364 64.0
SGA_v2.0_scaffold25G11149 Striga asiatica HOM05D005037 ORTHO05D006274 6.3e-125 451.4 392 62.2
PSO675G6067 Papaver somniferum HOM05D005037 ORTHO05D006274 3.1e-124 449.1 383 60.6
PSO541G3185 Papaver somniferum HOM05D005037 ORTHO05D006274 7.0e-124 448.0 383 60.3
FAN27G1276 Fragaria x ananassa HOM05D005037 ORTHO05D006274 4.5e-123 445.3 383 60.3
HPP92_020501 Vanilla planifolia HOM05D005037 ORTHO05D006274 5.9e-123 444.9 361 63.4
PSO673G0007 Papaver somniferum HOM05D005037 ORTHO05D006274 4.2e-121 438.7 366 61.5
CDE08G0468 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 2.1e-120 436.4 354 63.3
Os08g0107500 Oryza sativa ssp. japonica HOM05D005037 ORTHO05D006274 3.6e-120 435.6 361 62.3
PSO421G0325 Papaver somniferum HOM05D005037 ORTHO05D006274 3.6e-120 435.6 366 61.2
Zm00001eb260230 Zea mays HOM05D005037 ORTHO05D006274 1.0e-119 434.1 360 61.9
Lj4A690T47 Lonicera japonica HOM05D005037 ORTHO05D006274 2.0e-115 419.9 304 68.1
CSS0001186 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.6e-112 410.2 314 65.0
ECA234G0804 Erigeron canadensis HOM05D005037 ORTHO05D006274 3.6e-112 409.1 356 58.4
SEGI_36163 Sequoiadendron giganteum HOM05D005037 ORTHO05D006274 4.7e-112 408.7 381 56.4
SHI09275 Sapria himalayana HOM05D005037 ORTHO05D006274 1.4e-111 407.1 366 58.5
Dinv41137 Davidia involucrata HOM05D005037 ORTHO05D006274 1.7e-109 400.2 353 61.2
PSO673G0037 Papaver somniferum HOM05D005037 ORTHO05D006274 8.0e-104 381.3 343 58.0
unitig_747.g21501 Utricularia gibba HOM05D005037 ORTHO05D006274 1.4e-103 380.6 284 69.7
HPP92_020498 Vanilla planifolia HOM05D005037 ORTHO05D006274 1.7e-101 373.6 315 62.2
SMO348G0060 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 1.1e-100 370.9 364 54.9
Pp3c4_180 Physcomitrium patens HOM05D005037 ORTHO05D006274 2.4e-100 369.8 388 49.7
Oeu001556.2 Olea europaea HOM05D005037 ORTHO05D006274 3.2e-100 369.4 353 55.8
CSS0023189 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.3e-98 364.0 314 59.6
AagrBONN_evm.TU.Sc2ySwM_117.3544 Anthoceros agrestis HOM05D005037 ORTHO05D006274 4.9e-93 345.5 358 52.5
COL.COLO4_33811 Corchorus olitorius HOM05D005037 ORTHO05D006274 1.2e-91 340.9 372 50.8
Cfa018383 Carpinus fangiana HOM05D005037 ORTHO05D006274 5.6e-89 332.0 363 50.1
vmacro21120 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 6.8e-79 298.5 274 55.8
FAN20G2613 Fragaria x ananassa HOM05D005037 ORTHO05D006274 1.6e-75 287.3 197 76.1
SMO272G0010 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 2.3e-66 256.9 160 80.0
FAN15G0656 Fragaria x ananassa HOM05D005037 ORTHO05D006274 5.6e-65 252.3 167 79.0
Cre01.g017500 Chlamydomonas reinhardtii HOM05D005037 ORTHO05D006274 7.3e-65 251.9 273 48.0
PRCOL_00006527 Prasinoderma coloniale HOM05D005037 ORTHO05D006274 3.4e-62 243.0 373 39.1
PSO729G0215 Papaver somniferum HOM05D005037 ORTHO05D006274 1.9e-57 227.3 259 50.2
CBR_g48721 Chara braunii HOM05D005037 ORTHO05D006274 4.3e-49 199.5 327 34.9
MD05G1011500 Malus domestica HOM05D005037 ORTHO05D006274 7.4e-49 198.7 214 49.5
MCO07G375 Micromonas commoda HOM05D005037 ORTHO05D006274 2.8e-48 196.8 177 53.7
PSO017G3306 Papaver somniferum HOM05D005037 ORTHO05D006274 8.2e-48 195.3 328 39.6
CSS0016864 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 5.9e-46 189.1 159 61.0
CSS0012113 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.0e-42 178.3 197 49.2
CSS0029081 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 5.7e-41 172.6 197 48.7
Mapoly0003s0227 Marchantia polymorpha HOM05D005037 ORTHO05D006274 3.9e-34 149.8 229 38.0
C06p00420 Brassica napus HOM05D005037 ORTHO05D006274 4.3e-33 146.4 133 60.9
C06p00390 Brassica napus HOM05D005037 ORTHO05D006274 9.7e-33 145.2 133 60.2
Aa31LG6G9600 Aethionema arabicum HOM05D005037 ORTHO05D006274 6.9e-31 139.0 159 45.3
vmacro21119 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 1.0e-29 135.2 121 60.3
RcHm_v2.0_Chr2g0145391 Rosa chinensis HOM05D005037 ORTHO05D006274 1.4e-28 131.3 81 81.5
Actinidia15171 Actinidia chinensis HOM05D005037 ORTHO05D006274 7.7e-22 109.0 83 65.1
BraA06t27783Z Brassica rapa HOM05D005037 ORTHO05D013118 1.8e-18 97.8 113 46.9
Actinidia15170 Actinidia chinensis HOM05D005037 ORTHO05D006274 2.0e-17 94.4 97 42.3
CSS0019617 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 4.1e-15 86.7 51 78.4
CSS0038364 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 4.1e-15 86.7 51 78.4
PSO729G0072 Papaver somniferum HOM05D005037 ORTHO05D006274 8.5e-13 79.0 175 33.7
BraA01t00001Z Brassica rapa HOM05D005037 ORTHO05D013118 8.0e-11 72.4 94 45.7


User provided reference genes

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