Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 7.1e-144 513.8 246 100.0
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 7.1e-144 513.8 246 100.0
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 4.2e-128 461.5 246 90.7
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 1.3e-126 456.4 246 89.4
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 2.4e-123 445.7 248 87.1
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 4.2e-120 434.9 244 85.2
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 2.7e-119 432.2 245 85.3
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 2.3e-110 402.5 243 79.0
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 1.1e-109 400.2 246 79.3
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 1.9e-109 399.4 243 78.6
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 9.7e-109 397.1 242 79.3
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 9.7e-109 397.1 242 80.2
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 3.7e-108 395.2 246 78.0
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 2.1e-103 379.4 242 74.8
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 3.0e-102 375.6 243 73.7
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 1.1e-101 373.6 249 73.1
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 6.5e-89 331.3 186 86.0
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 4.0e-86 322.0 245 67.3
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 1.5e-85 320.1 242 63.2
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 2.6e-85 319.3 242 64.0
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 9.7e-85 317.4 242 64.9
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 2.2e-84 316.2 242 65.7
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 4.8e-84 315.1 242 64.9
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 1.6e-82 310.1 242 63.6
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 2.0e-82 309.7 239 64.0
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.3e-81 307.0 242 63.6
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 2.9e-81 305.8 242 63.2
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 6.5e-81 304.7 242 62.4
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 6.5e-81 304.7 242 62.4
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 1.1e-80 303.9 242 62.8
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 1.5e-80 303.5 242 62.8
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 3.2e-80 302.4 242 63.2
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 7.2e-80 301.2 242 62.4
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 1.6e-79 300.1 242 62.0
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 1.6e-79 300.1 242 62.0
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 2.1e-79 299.7 242 61.2
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 4.7e-79 298.5 242 61.2
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 4.7e-79 298.5 245 59.6
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 6.1e-79 298.1 242 62.0
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 8.0e-79 297.7 242 60.7
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 1.4e-78 297.0 245 60.0
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 5.2e-78 295.0 242 58.3
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 5.2e-78 295.0 242 58.3
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 8.8e-78 294.3 243 60.9
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 8.8e-78 294.3 242 61.2
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 8.8e-78 294.3 243 62.1
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 1.2e-77 293.9 242 59.9
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 2.0e-77 293.1 242 60.3
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 2.0e-77 293.1 242 59.9
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 2.6e-77 292.7 242 61.6
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 2.6e-77 292.7 243 60.5
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 2.8e-76 289.3 242 61.2
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 3.7e-76 288.9 242 59.1
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 8.3e-76 287.7 242 59.1
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.4e-75 286.2 242 58.7
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 3.1e-75 285.8 243 59.7
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 4.1e-75 285.4 242 60.7
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 7.0e-75 284.6 242 57.9
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 9.1e-75 284.3 243 60.9
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 9.1e-75 284.3 242 58.7
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 9.1e-75 284.3 245 58.0
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 9.1e-75 284.3 242 58.7
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 1.6e-74 283.5 242 58.7
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 1.6e-74 283.5 242 57.4
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 2.0e-74 283.1 245 58.8
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 3.5e-74 282.3 254 57.1
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 4.5e-74 282.0 244 57.8
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 4.5e-74 282.0 218 61.9
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 7.7e-74 281.2 242 57.9
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 7.7e-74 281.2 245 58.4
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 1.0e-73 280.8 243 58.4
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.0e-73 280.8 242 57.9
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 1.3e-73 280.4 242 57.0
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 2.2e-73 279.6 242 57.4
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 3.8e-73 278.9 242 57.0
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 5.0e-73 278.5 246 58.9
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 5.0e-73 278.5 246 58.9
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 6.5e-73 278.1 245 57.6
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 8.5e-73 277.7 243 57.6
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 2.5e-72 276.2 246 56.9
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 3.2e-72 275.8 243 58.0
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 4.2e-72 275.4 245 57.6
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 7.2e-72 274.6 242 57.0
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 1.6e-71 273.5 240 58.8
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 2.1e-71 273.1 245 56.7
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 2.7e-71 272.7 240 58.3
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 2.7e-71 272.7 242 56.2
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 1.8e-70 270.0 255 54.5
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.2e-69 267.3 246 55.3
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 2.0e-69 266.5 243 56.8
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.6e-69 266.2 246 55.7
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 5.7e-69 265.0 211 65.4
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 1.3e-68 263.8 237 55.3
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 4.9e-68 261.9 242 56.6
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 1.1e-67 260.8 243 54.3
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 1.4e-67 260.4 244 56.1
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 1.8e-67 260.0 246 54.9
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 7.0e-67 258.1 244 55.3
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 7.0e-67 258.1 244 55.3
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 2.7e-66 256.1 244 54.5
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.7e-66 256.1 243 54.3
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.7e-66 256.1 243 54.3
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 2.7e-66 256.1 242 55.4
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 4.5e-66 255.4 244 55.7
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 5.9e-66 255.0 242 56.2
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 5.9e-66 255.0 244 54.9
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 5.9e-66 255.0 246 55.7
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 1.0e-65 254.2 244 54.5
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.0e-65 254.2 243 53.9
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 1.3e-65 253.8 243 53.1
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 1.7e-65 253.4 244 54.1
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 1.7e-65 253.4 244 54.5
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 1.7e-65 253.4 244 54.1
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.9e-65 252.7 243 53.5
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 3.8e-65 252.3 239 53.1
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 6.6e-65 251.5 243 54.7
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 8.6e-65 251.1 245 54.3
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 1.9e-64 250.0 188 62.2
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 2.5e-64 249.6 244 54.1
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 3.3e-64 249.2 243 53.1
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 4.3e-64 248.8 242 53.7
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 7.3e-64 248.1 240 52.9
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 1.2e-63 247.3 244 53.7
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.2e-63 247.3 242 53.3
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 1.6e-63 246.9 231 54.1
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 4.7e-63 245.4 244 53.7
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 4.7e-63 245.4 244 53.7
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 4.7e-63 245.4 225 57.3
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 1.0e-62 244.2 243 53.5
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 3.0e-62 242.7 242 54.1
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 8.9e-62 241.1 240 52.1
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.0e-61 240.0 225 54.2
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 2.6e-61 239.6 233 53.2
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 4.4e-61 238.8 248 52.0
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 9.8e-61 237.7 212 57.5
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 9.8e-61 237.7 242 52.1
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 1.3e-60 237.3 225 53.3
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 8.3e-60 234.6 213 55.9
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 1.1e-59 234.2 231 52.8
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 4.1e-59 232.3 250 50.4
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 7.0e-59 231.5 241 52.7
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.3e-57 227.3 212 56.1
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 3.0e-57 226.1 249 48.6
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 3.9e-57 225.7 210 54.3
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 1.5e-56 223.8 245 49.4
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 3.3e-56 222.6 244 47.5
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 3.6e-55 219.2 230 50.0
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 8.0e-55 218.0 245 49.4
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 8.0e-55 218.0 240 47.1
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 3.4e-53 212.6 263 47.5
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 2.4e-51 206.5 129 78.3
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 5.4e-51 205.3 244 48.0
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 9.2e-51 204.5 162 64.2
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 3.9e-49 199.1 158 62.0
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 6.6e-49 198.4 244 45.5
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 4.3e-48 195.7 160 58.8
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 5.6e-48 195.3 232 47.4
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.5e-45 187.2 176 51.7
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 2.9e-44 183.0 267 39.3
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 8.3e-44 181.4 116 74.1
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.1e-43 181.0 246 43.1
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 1.7e-41 173.7 170 52.9
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 1.1e-38 164.5 270 36.7
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 1.4e-38 164.1 148 60.8
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 3.4e-37 159.5 125 61.6
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 6.4e-36 155.2 209 45.5
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 4.3e-32 142.5 121 59.5
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.6e-31 140.6 194 42.3
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 1.6e-31 140.6 102 66.7
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 1.9e-27 127.1 138 48.6
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 1.0e-25 121.3 169 39.1
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 1.8e-22 110.5 190 32.1
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 6.9e-22 108.6 114 51.8
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 4.9e-20 102.4 70 67.1
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 6.0e-18 95.5 99 49.5
PRCOL_00003701 Prasinoderma coloniale HOM05D003786 ORTHO05D004375 1.8e-17 94.0 168 29.8
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 3.0e-17 93.2 117 46.2
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 5.1e-17 92.4 78 52.6
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 1.1e-16 91.3 105 51.4
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 1.9e-16 90.5 99 53.5
Medtr4g119190 Medicago truncatula HOM05D003786 ORTHO05D004375 9.9e-13 78.2 48 72.9
CARHR273910 Cardamine hirsuta HOM05D003786 ORTHO05D004375 6.4e-12 75.5 86 48.8
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 1.1e-11 74.7 246 24.8
Cfa023727 Carpinus fangiana HOM05D003786 ORTHO05D004375 2.3e-09 67.0 190 25.8
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 3.9e-09 66.2 52 59.6


User provided reference genes

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