Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08130_v3 Cicer arietinum L. HOM05D005600 ORTHO05D006682 0.0e+00 1510.0 794 100.0
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 0.0e+00 1289.6 794 83.1
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 0.0e+00 1283.9 794 85.3
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 0.0e+00 1271.1 794 81.9
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 0.0e+00 1203.7 794 78.2
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1195.3 795 77.1
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1191.0 796 78.1
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1191.0 794 78.1
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1183.7 795 78.0
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1171.4 795 78.7
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1154.0 794 78.0
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1150.2 794 77.8
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 0.0e+00 1100.5 795 71.6
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 0.0e+00 1082.0 792 73.0
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 0.0e+00 1080.9 790 72.3
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 5.4e-312 1074.7 788 73.1
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 5.4e-312 1073.5 792 69.4
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 1.0e-308 1063.1 814 70.9
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 2.3e-308 1062.0 791 71.3
Manes.06G161000 Manihot esculenta HOM05D005600 ORTHO05D006682 2.9e-308 1061.6 793 70.4
Cpa.g.sc84.9 Carica papaya HOM05D005600 ORTHO05D006682 3.8e-308 1061.2 796 68.5
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 3.8e-308 1061.2 790 70.5
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 7.3e-307 1057.0 793 70.9
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 8.0e-306 1053.5 793 70.9
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 1.8e-305 1052.4 793 70.6
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 5.2e-305 1050.8 789 71.7
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 6.8e-305 1050.4 790 68.4
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 3.4e-304 1048.1 792 67.8
Atru.chr10.100 Acer truncatum HOM05D005600 ORTHO05D006682 9.8e-304 1046.6 792 67.8
Atru.chr10.118 Acer truncatum HOM05D005600 ORTHO05D006682 9.8e-304 1046.6 792 67.8
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 2.9e-303 1045.0 795 68.1
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 6.4e-303 1043.9 790 68.1
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 7.0e-302 1040.4 790 67.8
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 7.0e-302 1040.4 791 70.8
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 9.2e-302 1040.0 789 67.8
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 1.6e-301 1039.3 793 67.5
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 2.7e-301 1038.5 790 67.5
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 5.9e-301 1037.3 793 70.6
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 5.0e-300 1034.2 789 67.4
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 1.6e-298 1029.2 797 69.5
TWI39G0768 Tripterygium wilfordii HOM05D005600 ORTHO05D006682 6.2e-298 1027.3 789 70.3
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 2.3e-297 1025.4 807 65.9
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 1.2e-296 1023.1 758 71.2
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 3.4e-296 1021.5 815 65.0
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 4.4e-296 1021.1 793 69.4
Actinidia35417 Actinidia chinensis HOM05D005600 ORTHO05D006682 4.1e-294 1014.6 792 66.4
Nn3g21398 Nelumbo nucifera HOM05D005600 ORTHO05D006682 4.1e-294 1014.6 794 68.0
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 2.0e-293 1012.3 789 66.4
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 1.7e-292 1009.2 795 67.3
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 1.7e-292 1009.2 793 65.4
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 1.7e-292 1009.2 792 65.3
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 2.3e-292 1008.8 792 65.4
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 4.7e-290 1001.1 792 64.0
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 1.4e-289 999.6 789 64.8
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 9.8e-288 993.4 831 62.2
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 1.1e-286 989.9 853 61.4
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 7.1e-286 987.3 792 67.3
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 1.9e-283 979.2 789 64.6
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 2.5e-283 978.8 789 64.3
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 3.3e-283 978.4 789 63.6
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 3.3e-283 978.4 788 64.5
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 5.6e-283 977.6 789 64.5
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 1.6e-282 976.1 790 64.3
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 1.4e-281 973.0 788 64.2
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 2.3e-281 972.2 791 64.5
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 2.6e-280 968.8 780 64.4
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 4.4e-280 968.0 790 64.4
DCAR_009654 Daucus carota HOM05D005600 ORTHO05D006682 7.6e-280 967.2 806 65.0
Sabra09G0035700 Salix brachista HOM05D005600 ORTHO05D006682 9.9e-280 966.8 959 59.0
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 3.5e-277 958.4 787 65.4
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 5.1e-276 954.5 787 63.9
Hma1.2p1_0151F.1_g067180 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 3.3e-275 951.8 734 67.0
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 6.9e-273 944.1 846 62.9
COL.COLO4_36487 Corchorus olitorius HOM05D005600 ORTHO05D006682 1.5e-272 943.0 789 63.9
Lsat_1_v5_gn_7_110720 Lactuca sativa HOM05D005600 ORTHO05D006682 3.9e-268 928.3 787 63.3
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 8.7e-268 927.2 792 61.1
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 2.5e-267 925.6 791 62.3
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 1.3e-266 923.3 789 62.4
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 2.8e-266 922.2 792 61.1
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 3.1e-265 918.7 792 60.6
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 1.5e-264 916.4 792 60.7
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 3.8e-263 911.8 792 60.5
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 8.4e-263 910.6 792 59.8
MD11G1186900 Malus domestica HOM05D005600 ORTHO05D006682 8.4e-263 910.6 638 71.3
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 1.1e-262 910.2 792 60.4
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 1.4e-262 909.8 789 60.8
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 3.2e-262 908.7 792 60.4
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 4.2e-262 908.3 792 60.2
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 9.3e-262 907.1 800 58.4
ClCG03G012970 Citrullus lanatus HOM05D005600 ORTHO05D006682 2.1e-261 906.0 624 75.0
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 4.6e-261 904.8 839 57.8
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 2.3e-260 902.5 798 59.6
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 3.3e-259 898.7 876 57.9
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 5.6e-259 897.9 715 68.4
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 9.0e-257 890.6 790 61.8
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 1.8e-252 876.3 792 58.8
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 8.1e-250 867.5 795 57.4
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 2.9e-239 832.4 818 55.6
Lj2A14G43 Lonicera japonica HOM05D005600 ORTHO05D006682 5.7e-203 711.8 583 63.5
HPP92_006936 Vanilla planifolia HOM05D005600 ORTHO05D006682 1.3e-202 710.7 555 65.0
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 2.0e-200 703.4 801 46.8
Eucgr.B03713 Eucalyptus grandis HOM05D005600 ORTHO05D006682 1.3e-199 700.7 494 71.9
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 1.9e-198 696.8 795 46.8
VMungo1383G0719 Vigna mungo HOM05D005600 ORTHO05D006682 4.2e-198 695.7 446 79.4
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 4.0e-196 689.1 801 47.8
Nitab4.5_0008957g0040 Nicotiana tabacum HOM05D005600 ORTHO05D006682 1.4e-180 637.5 486 66.0
CDE01G0031 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 2.1e-173 613.6 738 50.8
SMO236G0107 Selaginella moellendorffii HOM05D005600 ORTHO05D006682 1.5e-171 607.4 803 41.5
Zm00001eb016670 Zea mays HOM05D005600 ORTHO05D006682 2.4e-169 600.1 513 60.2
CBR_g4015 Chara braunii HOM05D005600 ORTHO05D006682 1.0e-151 541.6 880 37.4
SEGI_34765 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 9.7e-126 455.3 378 61.1
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 6.9e-116 422.5 790 36.5
BcaC04g23081 Brassica carinata HOM05D005600 ORTHO05D006682 3.3e-110 403.7 354 61.0
SHI27472 Sapria himalayana HOM05D005600 ORTHO05D006682 1.2e-107 395.2 410 51.5
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 4.7e-104 383.3 310 64.2
CDE10G0769 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 5.5e-81 306.6 162 87.7
BolC9t54127H Brassica oleracea HOM05D005600 ORTHO05D006682 4.9e-77 293.5 386 48.2
Eucgr.B03714 Eucalyptus grandis HOM05D005600 ORTHO05D006682 2.7e-75 287.7 256 60.5
PRCOL_00004432 Prasinoderma coloniale HOM05D005600 ORTHO05D006682 1.9e-52 211.8 351 33.0
MCO11G503 Micromonas commoda HOM05D005600 ORTHO05D006682 5.6e-41 173.7 573 27.4
ClCG03G012990 Citrullus lanatus HOM05D005600 ORTHO05D006682 3.8e-37 161.0 104 73.1
Lj2A14T50 Lonicera japonica HOM05D005600 ORTHO05D006682 3.2e-28 131.3 176 47.2
SEGI_17739 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 3.9e-26 124.4 99 58.6
SEGI_12823 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.5e-25 122.5 91 62.6
Cfa024653 Carpinus fangiana HOM05D005600 ORTHO05D006682 3.4e-22 111.3 320 23.8
Cre12.g524100 Chlamydomonas reinhardtii HOM05D005600 ORTHO05D006682 9.9e-22 109.8 268 31.3
MBI19_g44409_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 3.5e-19 101.3 116 50.0
VMungo1383G0187 Vigna mungo HOM05D005600 ORTHO05D006682 7.4e-17 93.6 42 95.2
SEGI_14354 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 2.8e-16 91.7 130 39.2
A09p10400 Brassica napus HOM05D005600 ORTHO05D006682 1.6e-11 75.9 89 41.6
QL10p024418 Quercus lobata HOM05D005600 ORTHO05D006682 5.7e-09 67.4 41 70.7
Hund17892 Selenicereus undatus HOM05D026955 ORTHO05D006682 1.0e-05 56.6 29 86.2


User provided reference genes

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