Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_05680_v3 Cicer arietinum L. HOM05D001072 ORTHO05D006807 0.0e+00 3701.8 1878 100.0
Psat2g054080 Pisum sativum HOM05D001072 ORTHO05D006807 0.0e+00 3216.0 1885 86.2
TPR.G25340 Trifolium pratense HOM05D001072 ORTHO05D006807 0.0e+00 3167.9 1935 83.6
Medtr5g074510 Medicago truncatula HOM05D001072 ORTHO05D006807 0.0e+00 3163.2 1885 85.1
LjContig00141g0020287 Lotus japonicus HOM05D001072 ORTHO05D006807 0.0e+00 2998.0 1893 80.5
Glyma.02G232900 Glycine max HOM05D001072 ORTHO05D006807 0.0e+00 2969.5 1886 79.5
Lalb_Chr04g0251881 Lupinus albus HOM05D001072 ORTHO05D006807 0.0e+00 2918.3 1888 77.5
Phvul.008G250900 Phaseolus vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 2884.4 1884 77.3
arahy.Tifrunner.gnm1.ann1.QD7CJP Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 2808.9 1887 75.6
VMungo0647G0153 Vigna mungo HOM05D001072 ORTHO05D006807 0.0e+00 2800.0 2008 71.9
arahy.Tifrunner.gnm1.ann1.XX59BG Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 2797.3 1888 75.1
QL01p025823 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 2296.5 1918 61.3
Haze_24430 Corylus avellana HOM05D001072 ORTHO05D006807 0.0e+00 2264.6 1965 60.0
CiPaw.13G067600 Carya illinoinensis HOM05D001072 ORTHO05D006807 0.0e+00 2249.9 1918 60.7
Prupe.6G045900 Prunus persica HOM05D001072 ORTHO05D006807 0.0e+00 2230.7 1922 60.4
Atru.chr1.2576 Acer truncatum HOM05D001072 ORTHO05D006807 0.0e+00 2202.9 1923 60.1
Duzib168G2177 Durio zibethinus HOM05D001072 ORTHO05D006807 0.0e+00 2196.4 1910 59.4
MD03G1058100 Malus domestica HOM05D001072 ORTHO05D006807 0.0e+00 2194.9 1918 59.7
Manes.18G136800 Manihot esculenta HOM05D001072 ORTHO05D006807 0.0e+00 2180.6 1918 58.8
Thecc.09G359500 Theobroma cacao HOM05D001072 ORTHO05D006807 0.0e+00 2177.9 1913 59.3
RcHm_v2.0_Chr5g0071961 Rosa chinensis HOM05D001072 ORTHO05D006807 0.0e+00 2164.8 1919 58.8
Gohir.D03G143700 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 2148.6 1914 58.2
FvH4_3g39950 Fragaria vesca HOM05D001072 ORTHO05D006807 0.0e+00 2147.5 1919 58.2
FAN25G0381 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 2144.4 1919 58.2
CSS0035690 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 2136.7 1923 57.9
Gohir.A03G024800 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 2136.7 1912 58.1
FAN11G0037 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 2130.5 1956 57.3
COL.COLO4_11172 Corchorus olitorius HOM05D001072 ORTHO05D006807 0.0e+00 2126.3 1929 57.3
CANSAT54G0981 Cannabis sativa HOM05D001072 ORTHO05D006807 0.0e+00 2123.2 1919 58.1
Gorai.003G151000 Gossypium raimondii HOM05D001072 ORTHO05D006807 0.0e+00 2115.5 1923 57.2
Potri.019G126000 Populus trichocarpa HOM05D001072 ORTHO05D006807 0.0e+00 2113.6 1922 57.5
Rhsim13G0062700 Rhododendron simsii HOM05D001072 ORTHO05D006807 0.0e+00 2113.6 1921 56.9
Sabra19G0130600 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 2091.6 1922 57.4
Actinidia32600 Actinidia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 2090.1 1918 56.5
Sabra19G0124000 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 2077.8 1947 56.7
CSS0014731 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 2059.6 1904 56.8
TWI31G1315 Tripterygium wilfordii HOM05D001072 ORTHO05D006807 0.0e+00 2045.4 1920 55.9
MELO3C020494.2 Cucumis melo HOM05D001072 ORTHO05D006807 0.0e+00 2009.2 1916 55.0
CsaV3_1G036730 Cucumis sativus L. HOM05D001072 ORTHO05D006807 0.0e+00 1994.9 1917 54.6
FAN21G1089 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1994.9 2096 52.3
Sed0011357 Sechium edule HOM05D001072 ORTHO05D006807 0.0e+00 1990.3 1916 55.0
TAR623G1063 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1975.7 1946 54.4
PGR119G0697 Punica granatum HOM05D001072 ORTHO05D006807 0.0e+00 1974.5 1918 54.6
Cpa.g.sc2.338 Carica papaya HOM05D001072 ORTHO05D006807 0.0e+00 1971.8 1899 54.7
Cc01_g15000 Coffea canephora HOM05D001072 ORTHO05D006807 0.0e+00 1967.6 1922 54.3
ClCG03G000170 Citrullus lanatus HOM05D001072 ORTHO05D006807 0.0e+00 1952.9 1914 53.6
FAN16G0450 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1947.6 2419 46.2
TAR623G0321 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1946.8 1946 53.9
MSTRG.21246 Avicennia marina HOM05D001072 ORTHO05D006807 0.0e+00 1926.4 1908 52.9
Ciclev10000015m.g Citrus clementina HOM05D001072 ORTHO05D006807 0.0e+00 1922.9 1941 53.5
Migut.D00839 Erythranthe guttata HOM05D001072 ORTHO05D006807 0.0e+00 1905.6 1911 52.4
Lsat_1_v5_gn_8_108741 Lactuca sativa HOM05D001072 ORTHO05D006807 0.0e+00 1897.1 1917 53.1
Sopen09g017350 Solanum pennellii HOM05D001072 ORTHO05D006807 0.0e+00 1893.2 1918 52.6
THA.LOC104810689 Tarenaya hassleriana HOM05D001072 ORTHO05D006807 0.0e+00 1877.8 1905 51.9
Nitab4.5_0000684g0150 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1874.0 1921 52.2
Nn2g11057 Nelumbo nucifera HOM05D001072 ORTHO05D006807 0.0e+00 1872.4 1940 52.0
Thhalv10012416m.g Eutrema salsugineum HOM05D001072 ORTHO05D006807 0.0e+00 1860.9 1903 51.6
PSO017G5353 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1852.4 1928 51.1
Oeu050029.1 Olea europaea HOM05D001072 ORTHO05D006807 0.0e+00 1847.4 1853 52.6
Sp6g20090 Schrenkiella parvula HOM05D001072 ORTHO05D006807 0.0e+00 1847.0 1904 51.8
Lj2A1095G44 Lonicera japonica HOM05D001072 ORTHO05D006807 0.0e+00 1843.9 1784 53.6
HanXRQChr10g0312111 Helianthus annuus HOM05D001072 ORTHO05D006807 0.0e+00 1843.2 1907 52.1
PSO170G6524 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1835.1 1930 50.4
BcaB08g36177 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1834.7 1899 52.1
AT5G58410 Arabidopsis thaliana HOM05D001072 ORTHO05D006807 0.0e+00 1826.6 1901 51.0
AL8G34570 Arabidopsis lyrata HOM05D001072 ORTHO05D006807 0.0e+00 1822.8 1903 51.0
A03p12250 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1816.2 1899 51.0
Carub.0008s1900 Capsella rubella HOM05D001072 ORTHO05D006807 0.0e+00 1813.9 1903 51.0
BolC9t57885H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1806.2 1920 50.9
Sc06g0008120 Simmondsia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1805.8 1911 50.5
BolC3t13881H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1805.0 1928 50.8
A10p15850 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1803.5 1903 51.4
BcaC04g19869 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1801.6 1900 51.1
C03p14380 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1800.8 1899 51.2
BraA10t43640Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1793.5 1916 51.1
vmacro02906 Vaccinium macrocarpon HOM05D001072 ORTHO05D006807 0.0e+00 1793.5 1921 51.4
SGA_v2.0_scaffold20G09297 Striga asiatica HOM05D001072 ORTHO05D006807 0.0e+00 1793.1 1954 49.2
CARHR272240 Cardamine hirsuta HOM05D001072 ORTHO05D006807 0.0e+00 1790.8 1900 50.2
C09p50300 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1789.2 1899 50.7
Aqoxy4G02167 Aquilegia oxysepala HOM05D001072 ORTHO05D006807 0.0e+00 1786.5 1936 49.5
BraA03t10536Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1785.8 1919 50.7
ECA236G3191 Erigeron canadensis HOM05D001072 ORTHO05D006807 0.0e+00 1773.4 1857 51.3
DCAR_018643 Daucus carota HOM05D001072 ORTHO05D006807 0.0e+00 1747.6 1910 49.6
AUR62025311 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1741.9 1915 49.1
Peaxi162Scf00055g00202 Petunia axillaris HOM05D001072 ORTHO05D006807 0.0e+00 1741.5 1817 51.0
AUR62028316 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1735.3 1915 48.9
MBI03_g13043_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 0.0e+00 1692.6 1817 48.8
BcaB01g04524 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1684.1 1897 49.2
EL10Ac8g18974 Beta vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1675.6 1909 47.5
Nitab4.5_0000046g0010 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1674.8 1927 48.5
ATR0681G329 Amborella trichopoda HOM05D001072 ORTHO05D006807 0.0e+00 1639.8 1971 46.4
CDE04G3416 Ceratophyllum demersum HOM05D001072 ORTHO05D006807 0.0e+00 1591.2 1948 44.4
Hund08884 Selenicereus undatus HOM05D001072 ORTHO05D006807 0.0e+00 1579.3 1862 46.8
Aa31LG11G200 Aethionema arabicum HOM05D001072 ORTHO05D006807 0.0e+00 1521.9 1693 48.3
Dinv12245 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1464.5 1324 56.6
Os01g0977600 Oryza sativa ssp. japonica HOM05D001072 ORTHO05D006807 0.0e+00 1417.5 1951 41.4
Eucgr.J01850 Eucalyptus grandis HOM05D001072 ORTHO05D006807 0.0e+00 1415.2 1570 48.9
Zm00001eb093280 Zea mays HOM05D001072 ORTHO05D006807 0.0e+00 1402.5 1950 40.7
Dinv09685 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1350.9 1209 57.3
HPP92_012011 Vanilla planifolia HOM05D001072 ORTHO05D006807 0.0e+00 1321.6 1941 39.4
QL04p095953 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 1099.7 887 63.8
Mapoly0076s0060 Marchantia polymorpha HOM05D001072 ORTHO05D006807 0.0e+00 1099.3 2074 34.1
PGSC0003DMG402017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 0.0e+00 1086.6 1101 51.2
AagrBONN_evm.TU.Sc2ySwM_344.918 Anthoceros agrestis HOM05D001072 ORTHO05D006807 1.1e-305 1054.3 2048 34.5
Solyc09g055260.4 Solanum lycopersicum HOM05D001072 ORTHO05D006807 2.6e-294 1016.5 1139 49.5
Pp3c11_1040 Physcomitrium patens HOM05D001072 ORTHO05D006807 1.2e-291 1007.7 1982 34.4
Oeu050026.1 Olea europaea HOM05D001072 ORTHO05D006807 2.3e-282 976.9 1683 36.5
SMO367G0609 Selaginella moellendorffii HOM05D001072 ORTHO05D006807 1.1e-281 974.5 1907 34.0
unitig_0.g201 Utricularia gibba HOM05D001072 ORTHO05D006807 9.9e-254 881.7 1095 44.2
PGSC0003DMG401017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 1.4e-228 798.1 780 55.0
SEGI_04376 Sequoiadendron giganteum HOM05D001072 ORTHO05D006807 1.9e-204 718.0 919 43.1
HPP92_011994 Vanilla planifolia HOM05D001072 ORTHO05D006807 2.1e-142 511.9 705 42.8
Dinv12246 Davidia involucrata HOM05D001072 ORTHO05D006807 6.7e-85 320.9 259 60.6
Psat0s2465g0160 Pisum sativum HOM05D001072 ORTHO05D006807 3.8e-80 305.1 172 90.1
Dinv12247 Davidia involucrata HOM05D001072 ORTHO05D006807 2.0e-68 266.2 178 78.7
Ca_27012_v3 Cicer arietinum L. HOM05D000103 ORTHO05D006807 4.4e-68 265.0 184 77.2
PRCOL_00002801 Prasinoderma coloniale HOM05D001072 ORTHO05D006807 2.1e-62 246.1 560 29.6
CBR_g30899 Chara braunii HOM05D000019 ORTHO05D000048 5.5e-55 221.5 645 28.4
MCO05G029 Micromonas commoda HOM05D001072 ORTHO05D006807 9.5e-55 220.7 218 46.8
unitig_0.g202 Utricularia gibba HOM05D001072 ORTHO05D006807 7.0e-50 204.5 223 54.7
Cre06.g252100 Chlamydomonas reinhardtii HOM05D001072 ORTHO05D006807 5.9e-49 201.4 206 46.6
CBR_g30901 Chara braunii HOM05D001072 ORTHO05D006807 5.0e-48 198.4 385 30.9
MBI03_g13045_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 1.8e-45 189.9 142 70.4
QL04p095957 Quercus lobata HOM05D001072 ORTHO05D006807 8.9e-45 187.6 166 54.2
Psat4g121040 Pisum sativum HOM05D001072 ORTHO05D006807 9.8e-44 184.1 104 84.6
Glyma.14G200551 Glycine max HOM05D001072 ORTHO05D006807 1.4e-37 163.7 97 86.6
Cfa024964 Carpinus fangiana HOM05D001072 ORTHO05D006807 1.5e-28 133.7 209 33.0
Psat0s3437g0080 Pisum sativum HOM05D001072 ORTHO05D006807 4.4e-28 132.1 98 74.5
Psat3g023200 Pisum sativum HOM05D001072 ORTHO05D006807 4.4e-28 132.1 83 78.3
Lj2A1095G45 Lonicera japonica HOM05D001072 ORTHO05D006807 1.1e-21 110.9 130 50.8
TPR.G25341 Trifolium pratense HOM05D001072 ORTHO05D006807 1.4e-21 110.5 82 72.0
RcHm_v2.0_Chr5g0061981 Rosa chinensis HOM05D001072 ORTHO05D006807 3.4e-20 105.9 209 33.0
Ah.09g228980 Amaranthus hybridus HOM05D001072 ORTHO05D006807 2.7e-17 96.3 108 52.8
Cpa.g.sc2.314 Carica papaya HOM05D001072 ORTHO05D006807 8.1e-14 84.7 126 33.3
PSO017G5325 Papaver somniferum HOM05D001072 ORTHO05D006807 2.4e-13 83.2 73 52.1
PSO170G1906 Papaver somniferum HOM05D001072 ORTHO05D006807 2.0e-12 80.1 73 50.7


User provided reference genes

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