Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01048_v3 Cicer arietinum L. HOM05D006093 ORTHO05D007652 1.5e-226 789.3 433 100.0
Phvul.005G179300 Phaseolus vulgaris HOM05D006093 ORTHO05D007652 5.0e-161 571.6 433 71.1
TPR.G37262 Trifolium pratense HOM05D006093 ORTHO05D007652 1.5e-157 560.1 354 80.2
Glyma.13G366800 Glycine max HOM05D006093 ORTHO05D007652 1.6e-154 550.1 435 68.7
Lj3g0003829 Lotus japonicus HOM05D006093 ORTHO05D007652 1.0e-153 547.4 408 71.6
Lalb_Chr24g0395421 Lupinus albus HOM05D006093 ORTHO05D007652 3.1e-150 535.8 433 67.4
Medtr2g104100 Medicago truncatula HOM05D006093 ORTHO05D007652 9.9e-149 530.8 338 79.0
VMungo1080G1109 Vigna mungo HOM05D006093 ORTHO05D007652 2.4e-147 526.2 433 66.7
Psat5g303120 Pisum sativum HOM05D006093 ORTHO05D007652 3.0e-145 519.2 455 65.5
arahy.Tifrunner.gnm1.ann1.5T1ZSX Arachis hypogaea HOM05D006093 ORTHO05D007652 1.3e-137 493.8 324 76.5
arahy.Tifrunner.gnm1.ann1.RDN84X Arachis hypogaea HOM05D006093 ORTHO05D007652 1.3e-137 493.8 324 76.5
TWI12G0620 Tripterygium wilfordii HOM05D006093 ORTHO05D007652 7.3e-136 488.0 326 77.6
Gorai.011G089400 Gossypium raimondii HOM05D006093 ORTHO05D007652 1.1e-134 484.2 392 63.8
COL.COLO4_11898 Corchorus olitorius HOM05D006093 ORTHO05D007652 2.6e-133 479.6 330 72.1
QL05p032033 Quercus lobata HOM05D006093 ORTHO05D007652 3.8e-132 475.7 343 68.2
Duzib235G0399 Durio zibethinus HOM05D006093 ORTHO05D007652 4.2e-131 472.2 367 66.2
CSS0022367 Camellia sinensis var. sinensis HOM05D006093 ORTHO05D007652 9.3e-131 471.1 356 67.4
Atru.chr1.2881 Acer truncatum HOM05D006093 ORTHO05D007652 7.8e-130 468.0 381 63.8
Thecc.06G031100 Theobroma cacao HOM05D006093 ORTHO05D007652 3.0e-129 466.1 326 70.9
Gohir.D10G082500 Gossypium hirsutum HOM05D006093 ORTHO05D007652 6.6e-129 464.9 325 70.8
Ciclev10025737m.g Citrus clementina HOM05D006093 ORTHO05D007652 2.4e-126 456.4 439 59.0
FAN14G2225 Fragaria x ananassa HOM05D006093 ORTHO05D007652 9.0e-126 454.5 431 58.9
FvH4_6g29401 Fragaria vesca HOM05D006093 ORTHO05D007652 3.4e-125 452.6 431 58.7
Peaxi162Scf00553g00627 Petunia axillaris HOM05D006093 ORTHO05D007652 5.8e-125 451.8 356 69.9
TAR626G1009 Trochodendron aralioides HOM05D006093 ORTHO05D007652 7.6e-125 451.4 326 69.6
RcHm_v2.0_Chr2g0134861 Rosa chinensis HOM05D006093 ORTHO05D007652 3.8e-124 449.1 432 59.5
SalBow2G3638 Salvia bowleyana HOM05D006093 ORTHO05D007652 3.8e-124 449.1 440 62.0
FAN09G4542 Fragaria x ananassa HOM05D006093 ORTHO05D007652 4.9e-124 448.7 432 59.3
Eucgr.F03905 Eucalyptus grandis HOM05D006093 ORTHO05D007652 1.4e-123 447.2 324 67.9
Carub.0001s4146 Capsella rubella HOM05D006093 ORTHO05D007652 2.4e-123 446.4 332 68.1
MD17G1215000 Malus domestica HOM05D006093 ORTHO05D007652 3.2e-123 446.0 338 67.2
Sp1g39050 Schrenkiella parvula HOM05D006093 ORTHO05D007652 4.2e-123 445.7 372 62.1
AT1G52500 Arabidopsis thaliana HOM05D006093 ORTHO05D007652 5.4e-123 445.3 332 67.8
Rhsim12G0190000 Rhododendron simsii HOM05D006093 ORTHO05D007652 7.1e-123 444.9 402 58.7
CiPaw.01G249800 Carya illinoinensis HOM05D006093 ORTHO05D007652 9.3e-123 444.5 440 55.7
HanXRQChr02g0033451 Helianthus annuus HOM05D006093 ORTHO05D007652 1.2e-122 444.1 324 67.6
Lj5A75T43 Lonicera japonica HOM05D006093 ORTHO05D007652 1.2e-122 444.1 351 64.7
CAN.G407.11 Capsicum annuum HOM05D006093 ORTHO05D007652 7.9e-122 441.4 354 63.6
BcaC08g43998 Brassica carinata HOM05D006093 ORTHO05D007652 1.0e-121 441.0 329 67.5
PGSC0003DMG400014146 Solanum tuberosum HOM05D006093 ORTHO05D007652 1.0e-121 441.0 318 68.2
Thhalv10011553m.g Eutrema salsugineum HOM05D006093 ORTHO05D007652 2.3e-121 439.9 372 61.8
Nn8g39568 Nelumbo nucifera HOM05D006093 ORTHO05D007652 5.1e-121 438.7 254 81.1
Potri.003G031100 Populus trichocarpa HOM05D006093 ORTHO05D007652 5.1e-121 438.7 438 57.8
vmacro16879 Vaccinium macrocarpon HOM05D006093 ORTHO05D007652 5.1e-121 438.7 391 60.9
A05p18970 Brassica napus HOM05D006093 ORTHO05D007652 6.7e-121 438.3 328 67.1
BolC6t36581H Brassica oleracea HOM05D006093 ORTHO05D007652 6.7e-121 438.3 329 66.9
BraA05t20794Z Brassica rapa HOM05D006093 ORTHO05D007652 6.7e-121 438.3 328 67.1
CANSAT56G0666 Cannabis sativa HOM05D006093 ORTHO05D007652 2.5e-120 436.4 375 61.9
ECA238G2964 Erigeron canadensis HOM05D005083 ORTHO05D006310 2.5e-120 436.4 359 63.2
Manes.11G058700 Manihot esculenta HOM05D006093 ORTHO05D007652 5.6e-120 435.3 447 56.2
Hma1.2p1_0017F.1_g011320 Hydrangea macrophylla HOM05D006093 ORTHO05D007652 2.8e-119 433.0 412 58.0
BcaB02g10988 Brassica carinata HOM05D006093 ORTHO05D007652 3.7e-119 432.6 314 68.2
THA.LOC104818014 Tarenaya hassleriana HOM05D006093 ORTHO05D007652 4.8e-119 432.2 383 59.0
Solyc03g117510.4 Solanum lycopersicum HOM05D006093 ORTHO05D007652 6.2e-119 431.8 318 67.0
Migut.I00747 Erythranthe guttata HOM05D006093 ORTHO05D007652 8.1e-119 431.4 419 56.3
AUR62011503 Chenopodium quinoa HOM05D006093 ORTHO05D007652 1.4e-118 430.6 319 68.0
Aa31LG10G2500 Aethionema arabicum HOM05D006093 ORTHO05D007652 1.8e-118 430.3 401 57.6
MBI15_g24195_MAGBIO Magnolia biondii HOM05D006093 ORTHO05D007652 1.8e-118 430.3 357 63.9
PSO170G6797 Papaver somniferum HOM05D006093 ORTHO05D007652 1.8e-118 430.3 419 58.0
Sopen03g036410 Solanum pennellii HOM05D006093 ORTHO05D007652 2.4e-118 429.9 318 67.0
MSTRG.11153 Avicennia marina HOM05D006093 ORTHO05D007652 4.0e-118 429.1 480 53.1
Cpa.g.sc167.9 Carica papaya HOM05D006093 ORTHO05D007652 3.4e-117 426.0 296 69.6
AUR62016319 Chenopodium quinoa HOM05D006093 ORTHO05D007652 3.4e-117 426.0 392 59.4
ATR0800G026 Amborella trichopoda HOM05D006093 ORTHO05D007652 1.0e-116 424.5 437 57.2
CsaV3_4G001910 Cucumis sativus L. HOM05D006093 ORTHO05D007652 1.0e-116 424.5 439 55.4
Manes.04G110800 Manihot esculenta HOM05D006093 ORTHO05D007652 1.0e-116 424.5 442 55.0
GSVIVG01017379001 Vitis vinifera HOM05D006093 ORTHO05D007652 1.0e-116 424.5 249 79.9
EL10Ac9g21886 Beta vulgaris HOM05D006093 ORTHO05D007652 3.8e-116 422.5 436 56.0
CDE05G1298 Ceratophyllum demersum HOM05D006093 ORTHO05D007652 3.8e-116 422.5 355 62.5
Gohir.A10G068900 Gossypium hirsutum HOM05D006093 ORTHO05D007652 5.5e-115 418.7 377 60.5
FAN05G1370 Fragaria x ananassa HOM05D006093 ORTHO05D007652 7.1e-115 418.3 432 56.0
Ah.01g020480 Amaranthus hybridus HOM05D006093 ORTHO05D007652 1.2e-114 417.5 335 64.5
Sabra03G0017500 Salix brachista HOM05D006093 ORTHO05D007652 2.1e-114 416.8 524 48.7
Nitab4.5_0010806g0010 Nicotiana tabacum HOM05D006093 ORTHO05D007652 3.5e-114 416.0 479 51.1
Sed0013008 Sechium edule HOM05D006093 ORTHO05D007652 3.5e-114 416.0 438 55.9
Zm00001eb275260 Zea mays HOM05D006093 ORTHO05D007652 4.6e-114 415.6 421 54.2
Lsat_1_v5_gn_1_34180 Lactuca sativa HOM05D006093 ORTHO05D007652 5.1e-113 412.1 346 67.3
Os06g0643600 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 1.1e-112 411.0 420 54.3
ECA247G0880 Erigeron canadensis HOM05D006093 ORTHO05D007652 3.3e-112 409.5 375 57.6
HPP92_003851 Vanilla planifolia HOM05D006093 ORTHO05D007652 7.4e-112 408.3 428 51.6
Cc04_g04560 Coffea canephora HOM05D006093 ORTHO05D007652 8.2e-111 404.8 435 54.9
DCAR_025523 Daucus carota HOM05D006093 ORTHO05D007652 1.1e-110 404.4 289 68.2
MELO3C017842.2 Cucumis melo HOM05D006093 ORTHO05D007652 1.1e-107 394.4 433 56.6
ClCG07G012240 Citrullus lanatus HOM05D006093 ORTHO05D007652 5.5e-107 392.1 524 45.0
unitig_62.g23594 Utricularia gibba HOM05D006093 ORTHO05D007652 9.3e-107 391.3 403 54.3
PGR102G2220 Punica granatum HOM05D006093 ORTHO05D007652 1.2e-106 391.0 309 65.0
Os08g0304900 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 2.1e-106 390.2 338 58.9
Hund00502 Selenicereus undatus HOM05D006093 ORTHO05D007652 1.1e-104 384.4 289 65.7
HanXRQChr02g0033461 Helianthus annuus HOM05D006093 ORTHO05D007652 2.5e-104 383.3 341 58.7
HanXRQChr02g0033471 Helianthus annuus HOM05D006093 ORTHO05D007652 4.8e-103 379.0 420 51.9
Nitab4.5_0003072g0060 Nicotiana tabacum HOM05D006093 ORTHO05D007652 5.3e-102 375.6 493 47.1
Prupe.3G090700 Prunus persica HOM05D006093 ORTHO05D007652 1.9e-99 367.1 259 70.3
Haze_16582 Corylus avellana HOM05D006093 ORTHO05D007652 4.6e-98 362.5 268 67.9
AL1G60740 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 3.9e-97 359.4 222 77.0
CARHR042600 Cardamine hirsuta HOM05D006093 ORTHO05D007652 7.4e-96 355.1 222 76.1
SGA_v2.0_scaffold5G02719 Striga asiatica HOM05D006093 ORTHO05D007652 3.7e-95 352.8 347 55.6
SHI11225 Sapria himalayana HOM05D006093 ORTHO05D007652 3.4e-93 346.3 328 60.7
Sc10g0008130 Simmondsia chinensis HOM05D006093 ORTHO05D007652 1.5e-88 330.9 246 67.1
Actinidia08791 Actinidia chinensis HOM05D006093 ORTHO05D007652 3.7e-87 326.2 294 60.9
Dinv30625 Davidia involucrata HOM05D006093 ORTHO05D007652 4.8e-87 325.9 341 54.5
SMO367G0330 Selaginella moellendorffii HOM05D006093 ORTHO05D007652 8.2e-87 325.1 254 63.4
Pp3c23_21520 Physcomitrium patens HOM05D006093 ORTHO05D007652 1.8e-81 307.4 458 41.3
Pp3c8_24280 Physcomitrium patens HOM05D006093 ORTHO05D007652 5.7e-80 302.4 381 43.8
Mapoly0015s0062 Marchantia polymorpha HOM05D006093 ORTHO05D007652 4.8e-79 299.3 409 41.6
Cfa001944 Carpinus fangiana HOM05D006093 ORTHO05D007652 1.1e-75 288.1 340 50.9
Psat6g066000 Pisum sativum HOM05D006093 ORTHO05D007652 5.7e-72 275.8 155 88.4
Pp3c24_20180 Physcomitrium patens HOM05D006093 ORTHO05D007652 1.8e-70 270.8 384 41.4
Cre10.g428433 Chlamydomonas reinhardtii HOM05D006093 ORTHO05D007652 4.7e-66 256.1 322 44.1
PSO017G4202 Papaver somniferum HOM05D006093 ORTHO05D007652 3.7e-63 246.5 205 62.0
CBR_g884 Chara braunii HOM05D006093 ORTHO05D007652 8.3e-63 245.4 296 43.2
MCO15G481 Micromonas commoda HOM05D006093 ORTHO05D007652 1.8e-54 217.6 259 42.1
GSVIVG01026354001 Vitis vinifera HOM05D006093 ORTHO05D007652 5.8e-48 196.1 113 82.3
Cfa026683 Carpinus fangiana HOM05D006093 ORTHO05D007652 6.4e-47 192.6 377 32.9
Eucgr.L03570 Eucalyptus grandis HOM05D006093 ORTHO05D007652 1.4e-46 191.4 114 77.2
Cfa001945 Carpinus fangiana HOM05D006093 ORTHO05D007652 1.6e-42 177.9 412 36.9
Gohir.D10G074901 Gossypium hirsutum HOM05D006093 ORTHO05D007652 3.2e-38 163.7 150 56.7
SEGI_24777 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 4.7e-34 149.8 103 69.9
AL7G45760 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 1.5e-32 144.8 101 71.3
Actinidia08958 Actinidia chinensis HOM05D006093 ORTHO05D007652 2.1e-29 134.4 77 80.5
Oeu058023.3 Olea europaea HOM05D006093 ORTHO05D005440 3.0e-28 130.6 76 80.3
Dinv01702 Davidia involucrata HOM05D006093 ORTHO05D007652 1.1e-27 128.6 91 63.7
Dinv21460 Davidia involucrata HOM05D006093 ORTHO05D007652 8.1e-26 122.5 77 71.4
CARHR042620 Cardamine hirsuta HOM05D006093 ORTHO05D007652 1.1e-22 112.1 175 41.1
Medtr3g118550 Medicago truncatula HOM05D006093 ORTHO05D007652 6.0e-21 106.3 134 50.7
Thecc.09G173900 Theobroma cacao HOM05D006093 ORTHO05D007652 6.9e-17 92.8 79 58.2
AL1G60750 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 1.5e-16 91.7 111 48.6
SEGI_39009 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 1.7e-15 88.2 129 39.5
Sabra14G0094900 Salix brachista HOM05D006093 ORTHO05D007652 8.7e-12 75.9 54 64.8
SGA_v2.0_scaffold72G24067 Striga asiatica HOM05D006093 ORTHO05D007652 3.4e-08 63.9 128 32.8
Pp3c21_8660 Physcomitrium patens HOM05D016293 ORTHO05D018978 1.4e-06 58.5 95 34.7
Ca_29136_v3 Cicer arietinum L. HOM05D016293 ORTHO05D018978 5.5e-06 56.6 115 24.3


User provided reference genes

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