Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 5.3e-84 315.1 168 100.0
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 6.5e-82 308.1 168 97.6
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 4.5e-75 285.4 165 89.7
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 1.3e-74 283.9 164 89.6
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 1.4e-73 280.4 164 87.8
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 2.5e-73 279.6 164 87.2
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 4.2e-73 278.9 168 85.7
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 4.2e-73 278.9 165 87.9
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 9.4e-73 277.7 164 88.4
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 9.4e-73 277.7 166 86.7
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 9.4e-73 277.7 165 87.9
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 2.7e-72 276.2 165 86.7
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 2.7e-72 276.2 165 89.1
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 3.6e-72 275.8 165 86.7
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 4.7e-72 275.4 163 88.3
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 6.1e-72 275.0 164 87.2
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 1.0e-71 274.2 167 85.0
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 1.4e-71 273.9 168 85.1
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 1.4e-71 273.9 168 86.9
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 1.1e-70 270.8 163 87.7
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 2.0e-70 270.0 166 85.5
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 2.0e-70 270.0 168 84.5
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 2.0e-70 270.0 168 84.5
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 2.6e-70 269.6 167 84.4
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 2.6e-70 269.6 167 84.4
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 9.7e-70 267.7 167 84.4
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 1.7e-69 266.9 165 84.8
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 2.8e-69 266.2 166 86.7
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 2.8e-69 266.2 165 85.5
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 3.7e-69 265.8 171 81.3
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 3.7e-69 265.8 164 85.4
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 3.7e-69 265.8 167 83.8
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 3.7e-69 265.8 167 83.8
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 3.7e-69 265.8 165 84.8
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 4.8e-69 265.4 171 81.3
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 6.3e-69 265.0 167 85.0
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 1.1e-68 264.2 164 84.1
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 1.1e-68 264.2 167 83.8
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 1.4e-68 263.8 166 84.9
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 1.4e-68 263.8 164 82.9
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 2.4e-68 263.1 164 82.9
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 2.4e-68 263.1 170 81.8
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 2.4e-68 263.1 170 81.8
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 3.1e-68 262.7 166 81.3
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 4.1e-68 262.3 170 81.8
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 4.1e-68 262.3 167 82.0
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 4.1e-68 262.3 153 88.2
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 5.3e-68 261.9 164 83.5
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 5.3e-68 261.9 153 87.6
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 7.0e-68 261.5 167 82.6
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 7.0e-68 261.5 167 84.4
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 7.0e-68 261.5 153 86.9
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 9.1e-68 261.2 167 81.4
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 1.2e-67 260.8 167 82.0
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 1.2e-67 260.8 167 82.0
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 1.2e-67 260.8 167 82.0
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 1.2e-67 260.8 170 82.4
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 1.2e-67 260.8 154 88.3
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 1.5e-67 260.4 158 83.5
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 1.5e-67 260.4 176 80.1
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 1.5e-67 260.4 167 83.2
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 1.5e-67 260.4 163 85.9
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 1.5e-67 260.4 163 85.9
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 2.0e-67 260.0 161 85.7
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 2.0e-67 260.0 168 80.4
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 3.5e-67 259.2 152 88.8
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 4.5e-67 258.8 155 85.8
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 4.5e-67 258.8 155 85.8
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 5.9e-67 258.5 154 87.7
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 5.9e-67 258.5 160 85.0
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 5.9e-67 258.5 160 85.0
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 5.9e-67 258.5 157 83.4
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 5.9e-67 258.5 165 83.6
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 5.9e-67 258.5 165 84.2
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 5.9e-67 258.5 165 80.0
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 7.7e-67 258.1 154 87.7
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 7.7e-67 258.1 152 88.2
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 1.0e-66 257.7 153 86.9
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 1.0e-66 257.7 153 85.0
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 1.3e-66 257.3 168 82.7
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 1.3e-66 257.3 151 88.7
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 1.3e-66 257.3 167 83.2
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 1.3e-66 257.3 164 83.5
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 1.7e-66 256.9 167 82.6
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 1.7e-66 256.9 152 88.2
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 1.7e-66 256.9 167 81.4
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 2.2e-66 256.5 156 85.3
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 2.9e-66 256.1 167 83.2
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 3.8e-66 255.8 151 88.1
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 5.0e-66 255.4 165 81.8
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 5.0e-66 255.4 166 82.5
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 6.5e-66 255.0 154 87.7
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 6.5e-66 255.0 152 88.8
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 6.5e-66 255.0 165 81.2
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 8.5e-66 254.6 170 80.0
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 1.1e-65 254.2 164 82.3
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 1.5e-65 253.8 166 81.9
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.5e-65 253.8 166 81.9
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 2.5e-65 253.1 148 89.2
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 3.2e-65 252.7 159 83.0
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 4.2e-65 252.3 164 80.5
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 7.2e-65 251.5 164 82.9
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 4.7e-64 248.8 151 86.1
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 6.1e-64 248.4 176 73.9
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 8.0e-64 248.1 149 84.6
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 8.0e-64 248.1 147 89.1
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 1.8e-63 246.9 155 83.2
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 1.8e-63 246.9 155 83.2
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 1.8e-63 246.9 155 83.2
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 2.3e-63 246.5 166 80.1
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 2.3e-63 246.5 146 87.7
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 3.0e-63 246.1 166 79.5
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 4.0e-63 245.7 166 79.5
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 4.0e-63 245.7 166 79.5
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 4.0e-63 245.7 156 85.3
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 5.2e-63 245.4 166 78.9
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 5.2e-63 245.4 166 78.9
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 2.0e-62 243.4 153 82.4
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 2.6e-62 243.0 154 85.7
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 3.3e-62 242.7 153 84.3
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 6.3e-61 238.4 153 81.0
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 6.3e-61 238.4 153 81.0
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 8.2e-61 238.0 162 77.8
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 2.4e-60 236.5 163 79.1
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 5.3e-60 235.3 149 84.6
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 1.2e-59 234.2 152 85.5
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 4.5e-59 232.3 142 85.2
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 4.5e-59 232.3 165 78.2
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 7.7e-59 231.5 159 80.5
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 3.8e-58 229.2 145 83.4
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 2.1e-56 223.4 131 88.5
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 1.0e-55 221.1 150 78.7
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 1.8e-55 220.3 143 80.4
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 8.8e-55 218.0 164 75.0
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 8.8e-55 218.0 164 75.0
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 1.7e-53 213.8 168 68.5
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 3.1e-52 209.5 137 79.6
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 7.7e-51 204.9 139 79.9
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 1.9e-49 200.3 122 84.4
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.6e-48 197.2 171 69.0
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 1.6e-48 197.2 164 68.9
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 6.1e-48 195.3 134 79.9
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 5.2e-47 192.2 164 67.1
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 6.8e-47 191.8 134 77.6
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 1.8e-44 183.7 165 63.0
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 2.4e-44 183.3 161 63.4
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 5.9e-43 178.7 109 82.6
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 2.9e-42 176.4 153 64.7
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 1.1e-41 174.5 125 75.2
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 1.7e-34 150.6 91 82.4
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 2.9e-34 149.8 94 79.8
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 1.2e-32 144.4 110 72.7
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.0e-31 141.4 163 55.8
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.0e-31 141.4 163 55.8
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.0e-31 141.4 163 55.8
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 6.8e-31 138.7 163 55.8
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 4.6e-27 125.9 139 53.2
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.6e-19 100.9 141 46.1
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 1.6e-19 100.9 54 88.9
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 1.5e-14 84.3 55 80.0
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 2.6e-14 83.6 56 76.8
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 7.6e-14 82.0 40 100.0
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 1.1e-12 78.2 46 80.4
CSS0022278 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 1.1e-07 61.6 42 78.6


User provided reference genes

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