Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020017 Camellia sinensis var. sinensis HOM05D002606 ORTHO05D003016 1.0e-75 286.6 136 100.0
CSS0022879 Camellia sinensis var. sinensis HOM05D002606 ORTHO05D003016 1.0e-75 286.6 136 100.0
CSS0048195 Camellia sinensis var. sinensis HOM05D002606 ORTHO05D003016 1.0e-75 286.6 136 100.0
CSS0023316 Camellia sinensis var. sinensis HOM05D002606 ORTHO05D003016 2.3e-75 285.4 136 99.3
CSS0025184 Camellia sinensis var. sinensis HOM05D002606 ORTHO05D003016 2.3e-75 285.4 136 99.3
CSS0020872 Camellia sinensis var. sinensis HOM05D002606 ORTHO05D003016 5.0e-75 284.3 136 98.5
CSS0022111 Camellia sinensis var. sinensis HOM05D002606 ORTHO05D003016 2.6e-31 139.0 206 43.7
Haze_18795 Corylus avellana HOM05D002606 ORTHO05D003016 9.3e-29 130.6 170 44.7
ECA233G1730 Erigeron canadensis HOM05D002606 ORTHO05D003016 1.0e-27 127.1 166 44.0
Dinv24630 Davidia involucrata HOM05D002606 ORTHO05D003016 1.8e-27 126.3 206 39.8
Cc04_g06600 Coffea canephora HOM05D002606 ORTHO05D003016 3.0e-27 125.6 211 38.9
Nitab4.5_0001158g0110 Nicotiana tabacum HOM05D002606 ORTHO05D003016 3.9e-27 125.2 178 42.1
vmacro16425 Vaccinium macrocarpon HOM05D002606 ORTHO05D003016 3.9e-27 125.2 211 38.9
Gohir.D09G052500 Gossypium hirsutum HOM05D002606 ORTHO05D003016 1.5e-26 123.2 206 37.9
Gorai.006G057100 Gossypium raimondii HOM05D002606 ORTHO05D003016 1.5e-26 123.2 206 37.9
Thecc.03G047600 Theobroma cacao HOM05D002606 ORTHO05D003016 1.9e-26 122.9 243 35.4
QL10p027611 Quercus lobata HOM05D002606 ORTHO05D003016 4.3e-26 121.7 205 39.0
CiPaw.16G091200 Carya illinoinensis HOM05D002606 ORTHO05D003016 5.7e-26 121.3 206 38.3
Gohir.A09G051500 Gossypium hirsutum HOM05D002606 ORTHO05D003016 5.7e-26 121.3 206 37.4
HanXRQChr03g0087021 Helianthus annuus HOM05D002606 ORTHO05D003016 1.3e-25 120.2 206 38.3
Lj5C154T18 Lonicera japonica HOM05D002606 ORTHO05D003016 1.3e-25 120.2 213 37.6
Duzib205G1612 Durio zibethinus HOM05D002606 ORTHO05D003016 1.6e-25 119.8 206 36.4
Migut.I00455 Erythranthe guttata HOM05D002606 ORTHO05D003016 2.8e-25 119.0 206 37.4
Cpa.g.sc3.434 Carica papaya HOM05D002606 ORTHO05D003016 6.3e-25 117.9 202 38.1
DCAR_014772 Daucus carota HOM05D002606 ORTHO05D003016 6.3e-25 117.9 206 37.4
Cfa019693 Carpinus fangiana HOM05D002606 ORTHO05D003016 8.2e-25 117.5 195 37.4
Eucgr.B00858 Eucalyptus grandis HOM05D002606 ORTHO05D003016 8.2e-25 117.5 206 36.4
EL10Ac5g11524 Beta vulgaris HOM05D002606 ORTHO05D003016 1.8e-24 116.3 206 37.4
CANSAT80G0481 Cannabis sativa HOM05D002606 ORTHO05D003016 1.8e-24 116.3 203 37.4
arahy.Tifrunner.gnm1.ann1.NX7DWE Arachis hypogaea HOM05D002606 ORTHO05D003016 4.1e-24 115.2 212 35.8
TWI81G0397 Tripterygium wilfordii HOM05D002606 ORTHO05D003016 4.1e-24 115.2 203 36.5
Psat1g032440 Pisum sativum HOM05D002606 ORTHO05D003016 5.3e-24 114.8 206 36.9
Prupe.5G230300 Prunus persica HOM05D002606 ORTHO05D003016 5.3e-24 114.8 203 37.4
Hund02332 Selenicereus undatus HOM05D002606 ORTHO05D003016 5.3e-24 114.8 130 50.0
AUR62033741 Chenopodium quinoa HOM05D002606 ORTHO05D003016 6.9e-24 114.4 206 35.0
Oeu005547.1 Olea europaea HOM05D002606 ORTHO05D003016 6.9e-24 114.4 236 33.9
AUR62029960 Chenopodium quinoa HOM05D002606 ORTHO05D003016 9.0e-24 114.0 206 35.0
Sabra15G0055700 Salix brachista HOM05D002606 ORTHO05D003016 9.0e-24 114.0 206 35.9
TPR.G1475 Trifolium pratense HOM05D002606 ORTHO05D003016 9.0e-24 114.0 206 36.4
arahy.Tifrunner.gnm1.ann1.CMXS5I Arachis hypogaea HOM05D002606 ORTHO05D003016 1.5e-23 113.2 212 35.4
Medtr0110s0050 Medicago truncatula HOM05D002606 ORTHO05D003016 1.5e-23 113.2 206 36.4
MD14G1234100 Malus domestica HOM05D002606 ORTHO05D003016 2.0e-23 112.8 203 36.9
Atru.chr9.958 Acer truncatum HOM05D002606 ORTHO05D003016 3.4e-23 112.1 206 36.4
Lj2g0015801 Lotus japonicus HOM05D002606 ORTHO05D003016 3.4e-23 112.1 206 35.0
Sabra15G0063300 Salix brachista HOM05D002606 ORTHO05D003016 3.4e-23 112.1 206 35.4
AT1G18090 Arabidopsis thaliana HOM05D002606 ORTHO05D003016 4.5e-23 111.7 203 36.9
FAN04G2084 Fragaria x ananassa HOM05D002606 ORTHO05D003016 4.5e-23 111.7 189 36.5
Ciclev10007863m.g Citrus clementina HOM05D002606 ORTHO05D003016 5.9e-23 111.3 203 36.5
Phvul.004G151700 Phaseolus vulgaris HOM05D002606 ORTHO05D003016 5.9e-23 111.3 206 35.0
Sp1g16110 Schrenkiella parvula HOM05D002606 ORTHO05D003016 5.9e-23 111.3 203 36.5
Glyma.07G100600 Glycine max HOM05D002606 ORTHO05D003016 7.6e-23 110.9 206 34.5
Sed0024498 Sechium edule HOM05D002606 ORTHO05D003016 7.6e-23 110.9 206 35.4
Aa31LG7G2980 Aethionema arabicum HOM05D002606 ORTHO05D003016 1.0e-22 110.5 203 36.5
AL1G30470 Arabidopsis lyrata HOM05D002606 ORTHO05D003016 1.0e-22 110.5 203 36.5
Thhalv10007197m.g Eutrema salsugineum HOM05D002606 ORTHO05D003016 1.0e-22 110.5 203 36.5
Nn3g18593 Nelumbo nucifera HOM05D002606 ORTHO05D003016 1.0e-22 110.5 203 36.0
PGSC0003DMG400005737 Solanum tuberosum HOM05D002606 ORTHO05D003016 1.0e-22 110.5 203 36.0
CARHR018680 Cardamine hirsuta HOM05D002606 ORTHO05D003016 1.3e-22 110.2 203 36.5
Carub.0001s1776 Capsella rubella HOM05D002606 ORTHO05D003016 1.7e-22 109.8 203 36.0
BcaC07g38906 Brassica carinata HOM05D002606 ORTHO05D003016 2.9e-22 109.0 203 36.0
A08p30550 Brassica napus HOM05D002606 ORTHO05D003016 2.9e-22 109.0 203 36.0
C08p18420 Brassica napus HOM05D002606 ORTHO05D003016 2.9e-22 109.0 203 36.0
Sopen03g037960 Solanum pennellii HOM05D002606 ORTHO05D003016 2.9e-22 109.0 203 36.0
Nitab4.5_0001644g0030 Nicotiana tabacum HOM05D002606 ORTHO05D003016 3.8e-22 108.6 210 35.2
THA.LOC104813917 Tarenaya hassleriana HOM05D002606 ORTHO05D003016 3.8e-22 108.6 203 36.0
BolC8t49472H Brassica oleracea HOM05D002606 ORTHO05D003016 5.0e-22 108.2 205 35.6
CsaV3_1G007030 Cucumis sativus L. HOM05D002606 ORTHO05D003016 8.5e-22 107.5 206 34.5
RcHm_v2.0_Chr7g0178771 Rosa chinensis HOM05D002606 ORTHO05D003016 8.5e-22 107.5 203 34.5
Solyc03g119070.2 Solanum lycopersicum HOM05D002606 ORTHO05D003016 8.5e-22 107.5 203 36.0
Rhsim12G0139800 Rhododendron simsii HOM05D002606 ORTHO05D003016 1.1e-21 107.1 256 32.0
Aqoxy3G04014 Aquilegia oxysepala HOM05D002606 ORTHO05D003016 1.9e-21 106.3 203 34.5
FvH4_5g17080 Fragaria vesca HOM05D002606 ORTHO05D003016 1.9e-21 106.3 203 34.0
BraA08t34987Z Brassica rapa HOM05D002606 ORTHO05D003016 2.5e-21 105.9 203 35.5
VMungo0464G0918 Vigna mungo HOM05D002606 ORTHO05D003016 4.2e-21 105.1 206 34.0
Lsat_1_v5_gn_8_1440 Lactuca sativa HOM05D002606 ORTHO05D003016 6.7e-19 97.8 206 34.0
FAN08G0509 Fragaria x ananassa HOM05D002606 ORTHO05D003016 8.8e-19 97.4 168 35.7
Actinidia35112 Actinidia chinensis HOM05D002606 ORTHO05D003016 1.9e-18 96.3 217 32.3
COL.COLO4_22314 Corchorus olitorius HOM05D002606 ORTHO05D003016 1.9e-18 96.3 55 78.2
Manes.14G169100 Manihot esculenta HOM05D002606 ORTHO05D003016 2.5e-18 95.9 73 67.1
TAR629G1583 Trochodendron aralioides HOM05D002606 ORTHO05D003016 4.3e-18 95.1 58 72.4
ATR0686G055 Amborella trichopoda HOM05D002606 ORTHO05D003016 5.7e-18 94.7 216 30.6
AagrBONN_evm.TU.Sc2ySwM_362.488 Anthoceros agrestis HOM05D002606 ORTHO05D003016 9.7e-18 94.0 207 30.4
PGR083G1787 Punica granatum HOM05D002606 ORTHO05D003016 3.7e-17 92.0 58 70.7
Lalb_Chr24g0398031 Lupinus albus HOM05D002606 ORTHO05D003016 6.3e-17 91.3 189 33.9
GSVIVG01008397001 Vitis vinifera HOM05D002606 ORTHO05D003016 6.3e-17 91.3 58 69.0
Peaxi162Scf00683g00215 Petunia axillaris HOM05D002606 ORTHO05D003016 4.1e-16 88.6 55 74.5
Atru.chr9.1768 Acer truncatum HOM05D002606 ORTHO05D003016 5.3e-16 88.2 58 70.7
Mapoly0058s0059 Marchantia polymorpha HOM05D002606 ORTHO05D003016 2.0e-15 86.3 86 53.5
Sc10g0009290 Simmondsia chinensis HOM05D002606 ORTHO05D003016 2.0e-15 86.3 58 63.8
ClCG04G010770 Citrullus lanatus HOM05D002606 ORTHO05D003016 3.4e-15 85.5 58 65.5
Atru.chr9.1770 Acer truncatum HOM05D002606 ORTHO05D003016 4.5e-15 85.1 58 69.0
MELO3C002121.2 Cucumis melo HOM05D002606 ORTHO05D003016 5.9e-15 84.7 58 63.8
CAN.G1129.26 Capsicum annuum HOM05D002606 ORTHO05D003016 1.7e-14 83.2 55 70.9
Potri.015G041400 Populus trichocarpa HOM05D002606 ORTHO05D003016 1.6e-12 76.6 45 73.3
FAN18G4280 Fragaria x ananassa HOM05D002606 ORTHO05D003016 1.8e-11 73.2 45 73.3
Actinidia37421 Actinidia chinensis HOM05D002606 ORTHO05D003016 2.3e-11 72.8 39 82.1
FAN13G0058 Fragaria x ananassa HOM05D002606 ORTHO05D003016 2.3e-11 72.8 45 71.1
Nitab4.5_0001644g0080 Nicotiana tabacum HOM05D002606 ORTHO05D003016 3.3e-10 68.9 57 59.6
Cre07.g353950 Chlamydomonas reinhardtii HOM05D002606 ORTHO05D003016 3.7e-09 65.5 55 54.5
CANSAT80G0305 Cannabis sativa HOM05D002606 ORTHO05D003016 1.8e-08 63.2 36 77.8
Ah.14g086800 Amaranthus hybridus HOM05D002606 ORTHO05D003016 3.1e-08 62.4 107 31.8
Hma1.2p1_0015F.1_g010570 Hydrangea macrophylla HOM05D002606 ORTHO05D003016 3.1e-08 62.4 99 37.4
arahy.Tifrunner.gnm1.ann1.0CW7N2 Arachis hypogaea HOM05D002606 ORTHO05D003016 5.3e-08 61.6 95 37.9
arahy.Tifrunner.gnm1.ann1.CS3QBI Arachis hypogaea HOM05D002606 ORTHO05D003016 5.3e-08 61.6 95 37.9
Cpa.g.sc17.163 Carica papaya HOM05D002606 ORTHO05D003016 5.3e-08 61.6 201 26.4
Mapoly0124s0012 Marchantia polymorpha HOM05D002606 ORTHO05D003016 7.0e-08 61.2 63 49.2
EL10Ac8g19815 Beta vulgaris HOM05D002606 ORTHO05D003016 9.1e-08 60.8 58 46.6
SMO174G0195 Selaginella moellendorffii HOM05D002606 ORTHO05D003016 9.1e-08 60.8 54 53.7
SHI19408 Sapria himalayana HOM05D002606 ORTHO05D003016 1.5e-07 60.1 58 46.6
Pp3c23_8000 Physcomitrium patens HOM05D002606 ORTHO05D003016 2.0e-07 59.7 51 52.9
AUR62027619 Chenopodium quinoa HOM05D002606 ORTHO05D003016 3.4e-07 58.9 58 43.1
SalBow8G0847 Salvia bowleyana HOM05D002606 ORTHO05D003016 3.4e-07 58.9 58 44.8
vmacro03988 Vaccinium macrocarpon HOM05D002606 ORTHO05D003016 4.5e-07 58.5 95 35.8
CANSAT25G2940 Cannabis sativa HOM05D002606 ORTHO05D003016 5.9e-07 58.2 36 72.2
AUR62035823 Chenopodium quinoa HOM05D002606 ORTHO05D003016 7.7e-07 57.8 58 43.1
SEGI_39257 Sequoiadendron giganteum HOM05D002606 ORTHO05D003016 7.7e-07 57.8 69 42.0
Sc24g0001920 Simmondsia chinensis HOM05D002606 ORTHO05D003016 7.7e-07 57.8 53 49.1
Actinidia19476 Actinidia chinensis HOM05D002606 ORTHO05D003016 1.0e-06 57.4 95 35.8
CARHR028950 Cardamine hirsuta HOM05D002606 ORTHO05D003016 1.0e-06 57.4 58 41.4
CAN.G257.100 Capsicum annuum HOM05D002606 ORTHO05D003016 1.3e-06 57.0 58 43.1
CiPaw.09G132100 Carya illinoinensis HOM05D002606 ORTHO05D003016 1.3e-06 57.0 95 35.8
AagrBONN_evm.TU.Sc2ySwM_228.4382 Anthoceros agrestis HOM05D002606 ORTHO05D003016 1.7e-06 56.6 53 52.8
CDE05G1185 Ceratophyllum demersum HOM05D002606 ORTHO05D003016 1.7e-06 56.6 57 43.9
ECA236G2241 Erigeron canadensis HOM05D002606 ORTHO05D003016 1.7e-06 56.6 58 43.1
Eucgr.H02815 Eucalyptus grandis HOM05D002606 ORTHO05D003016 1.7e-06 56.6 58 44.8
Thhalv10006968m.g Eutrema salsugineum HOM05D002606 ORTHO05D003016 1.7e-06 56.6 58 43.1
Oeu001059.1 Olea europaea HOM05D002606 ORTHO05D003016 1.7e-06 56.6 57 43.9
Solyc02g071530.2 Solanum lycopersicum HOM05D002606 ORTHO05D003016 1.7e-06 56.6 68 41.2
Sopen02g020560 Solanum pennellii HOM05D002606 ORTHO05D003016 1.7e-06 56.6 68 41.2
PGSC0003DMG400007247 Solanum tuberosum HOM05D002606 ORTHO05D003016 1.7e-06 56.6 68 41.2
TWI09G1585 Tripterygium wilfordii HOM05D002606 ORTHO05D003016 2.2e-06 56.2 93 34.4
Atru.chr10.1471 Acer truncatum HOM05D002606 ORTHO05D003016 2.9e-06 55.8 53 47.2
AL1G43460 Arabidopsis lyrata HOM05D002606 ORTHO05D003016 2.9e-06 55.8 58 39.7
BcaB03g13871 Brassica carinata HOM05D002606 ORTHO05D003016 2.9e-06 55.8 68 38.2
BcaC06g35445 Brassica carinata HOM05D002606 ORTHO05D003016 2.9e-06 55.8 68 38.2
A07p10450 Brassica napus HOM05D002606 ORTHO05D003016 2.9e-06 55.8 68 38.2
C07p16090 Brassica napus HOM05D002606 ORTHO05D003016 2.9e-06 55.8 68 38.2
BolC7t42094H Brassica oleracea HOM05D002606 ORTHO05D003016 2.9e-06 55.8 68 38.2
BraA07t28845Z Brassica rapa HOM05D002606 ORTHO05D003016 2.9e-06 55.8 68 38.2
Carub.0001s2785 Capsella rubella HOM05D002606 ORTHO05D003016 2.9e-06 55.8 58 41.4
HanXRQChr04g0115561 Helianthus annuus HOM05D002606 ORTHO05D003016 2.9e-06 55.8 58 43.1
Peaxi162Scf00308g00815 Petunia axillaris HOM05D002606 ORTHO05D003016 2.9e-06 55.8 58 41.4
Eucgr.D00356 Eucalyptus grandis HOM05D002606 ORTHO05D003016 3.8e-06 55.5 58 43.1
FAN21G3713 Fragaria x ananassa HOM05D002606 ORTHO05D003016 3.8e-06 55.5 53 45.3
Glyma.05G163700 Glycine max HOM05D002606 ORTHO05D003016 3.8e-06 55.5 51 47.1
Glyma.08G120900 Glycine max HOM05D002606 ORTHO05D003016 3.8e-06 55.5 51 47.1
Manes.17G062800 Manihot esculenta HOM05D002606 ORTHO05D003016 3.8e-06 55.5 68 41.2
SGA_v2.0_scaffold1G00119 Striga asiatica HOM05D002606 ORTHO05D003016 3.8e-06 55.5 53 45.3
MSTRG.16192 Avicennia marina HOM05D002606 ORTHO05D003016 5.0e-06 55.1 53 45.3
CSS0035276 Camellia sinensis var. sinensis HOM05D002606 ORTHO05D003016 5.0e-06 55.1 53 45.3
CANSAT35G1314 Cannabis sativa HOM05D002606 ORTHO05D003016 5.0e-06 55.1 58 41.4
Cc09_g09990 Coffea canephora HOM05D002606 ORTHO05D003016 5.0e-06 55.1 53 45.3
ATR0763G174 Amborella trichopoda HOM05D002606 ORTHO05D003016 6.5e-06 54.7 69 36.2
ClCG03G007250 Citrullus lanatus HOM05D002606 ORTHO05D003016 6.5e-06 54.7 53 45.3
MELO3C002697.2 Cucumis melo HOM05D002606 ORTHO05D003016 6.5e-06 54.7 53 45.3
CsaV3_1G032850 Cucumis sativus L. HOM05D002606 ORTHO05D003016 6.5e-06 54.7 53 45.3
Lj1A1180T81 Lonicera japonica HOM05D002606 ORTHO05D003016 6.5e-06 54.7 53 45.3
MD10G1269500 Malus domestica HOM05D002606 ORTHO05D003016 6.5e-06 54.7 53 45.3
MCO15G053 Micromonas commoda HOM05D002606 ORTHO05D003016 6.5e-06 54.7 49 53.1
Prupe.4G072200 Prunus persica HOM05D002606 ORTHO05D003016 6.5e-06 54.7 53 45.3
QL05p052775 Quercus lobata HOM05D002606 ORTHO05D003016 6.5e-06 54.7 53 45.3
Sed0008006 Sechium edule HOM05D002606 ORTHO05D003016 6.5e-06 54.7 53 45.3
Thecc.06G159700 Theobroma cacao HOM05D002606 ORTHO05D003016 6.5e-06 54.7 53 47.2
GSVIVG01021316001 Vitis vinifera HOM05D002606 ORTHO05D003016 6.5e-06 54.7 63 41.3
Aqoxy4G00175 Aquilegia oxysepala HOM05D002606 ORTHO05D003016 8.5e-06 54.3 51 49.0
Duzib235G0230 Durio zibethinus HOM05D002606 ORTHO05D003016 8.5e-06 54.3 53 47.2
Gohir.A10G032600 Gossypium hirsutum HOM05D002606 ORTHO05D003016 8.5e-06 54.3 53 47.2
Gohir.D10G033300 Gossypium hirsutum HOM05D002606 ORTHO05D003016 8.5e-06 54.3 53 47.2
Gorai.011G035100 Gossypium raimondii HOM05D002606 ORTHO05D003016 8.5e-06 54.3 53 47.2
Nitab4.5_0003746g0040 Nicotiana tabacum HOM05D002606 ORTHO05D003016 8.5e-06 54.3 53 45.3
Nitab4.5_0007383g0040 Nicotiana tabacum HOM05D002606 ORTHO05D003016 8.5e-06 54.3 53 45.3
Potri.011G077001 Populus trichocarpa HOM05D002606 ORTHO05D003016 8.5e-06 54.3 58 41.4
TAR624G1252 Trochodendron aralioides HOM05D002606 ORTHO05D003016 8.5e-06 54.3 53 43.4
HPP92_017792 Vanilla planifolia HOM05D002606 ORTHO05D003016 8.5e-06 54.3 58 41.4


User provided reference genes

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