Gene: AT1G18090

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G18090
  • Transcript Identifier AT1G18090.1
  • Gene Type Coding gene
  • Location Chr1 : 6224539-6227715 : positive

Gene Family Information

  • ID HOM05D002606
  • #Genes/#Species 262/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G18090.1
  • uniprot Q94A33

Descriptions

  • Description 5'-3' exonuclease family protein
  • Computational description 5'-3' exonuclease family protein; FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: XPG conserved site (InterPro:IPR019974), XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), 5'-3' exonuclease, C-terminal subdomain (InterPro:IPR020045), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG/RAD2 endonuclease (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: 5'-3' exonuclease family protein (TAIR:AT1G29630.2); Has 2134 Blast hits to 2045 proteins in 397 species: Archae - 265; Bacteria - 69; Metazoa - 518; Fungi - 574; Plants - 189; Viruses - 16; Other Eukaryotes - 503 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004527
IEA
GOA Databaseexonuclease activity
GO:0035312
ISO
PLAZA Homology (enrichment)5'-3' exodeoxyribonuclease activity HOM05D002606
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0046872
IEA
InterPrometal ion binding
GO:0004518
IEA
GOA Databasenuclease activity
GO:0004518
IEA
InterPronuclease activity
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity
GO:0003677
IEA
Gene OntologyDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0016788
IEA
GOA Databasehydrolase activity, acting on ester bonds
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0017108
IBA
Gene Ontology5'-flap endonuclease activity1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR029060 PIN-like domain superfamily
IPR008918 Helix-hairpin-helix motif, class 2
IPR006086 XPG-I domain
IPR006085 XPG, N-terminal
IPR006084 XPG/Rad2 endonuclease
IPR044752 Exonuclease 1-like, PIN-like domain
IPR036279 5'-3' exonuclease, C-terminal domain superfamily
Mapman id Description
14.3.4 DNA damage response.homologous recombination repair (HR).exonuclease (EXO1)