Gene: Sopen03g037960
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen03g037960
- Transcript Identifier Sopen03g037960.1
- Gene Type Coding gene
- Location Spenn-ch03 : 72355031-72358643 : positive
Gene Family Information
- ID HOM05D002606
- #Genes/#Species 262/98
- Phylogenetic origin
- ID ORTHO05D003016
- #Genes/#Species 248/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen03g037960.1
Descriptions
- Description 5-3 exonuclease family protein | FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity | INVOLVED IN: DNA repair | LOCATED IN: cellular_component unknown | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: XPG conserved site , XPG N-terminal , DNA repair protein (XPGC)/yeast Rad , 5, apos, -3, apos | exonuclease, C-terminal subdomain , Helix-hairpin-helix motif, class 2 , XPG/RAD2 endonuclease | BEST Arabidopsis thaliana protein match is: 5-3 exonuclease family protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006281 | ISO | PLAZA Homology (enrichment) | DNA repair | HOM05D002606 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0004518 | IEA | InterPro | nuclease activity | |
| GO:0046872 | IEA | InterPro | metal ion binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003824 | IEA | InterPro | catalytic activity | |
| GO:0035312 | ISO | PLAZA Homology (enrichment) | 5'-3' exodeoxyribonuclease activity | HOM05D002606 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 14.3.4 | DNA damage response.homologous recombination repair (HR).exonuclease (EXO1) |