Gene: Sopen02g020560

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen02g020560
  • Transcript Identifier Sopen02g020560.3
  • Gene Type Coding gene
  • Location Spenn-ch02 : 44280287-44288842 : positive

Gene Family Information

  • ID HOM05D002606
  • #Genes/#Species 262/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen02g020560.3

Descriptions

  • Description 5-3 exonuclease family protein | FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity | INVOLVED IN: DNA repair | EXPRESSED IN: 10 plant structures | EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage | CONTAINS InterPro DOMAIN/s: DNA repair protein (XPGC)/yeast Rad , 5, apos, -3, apos | exonuclease, C-terminal subdomain , Helix-hairpin-helix motif, class 2 , XPG/RAD2 endonuclease | BEST Arabidopsis thaliana protein match is: 5-3 exonuclease family protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006281
IEA
InterProDNA repair

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004518
IEA
InterPronuclease activity
GO:0003677
IEA
InterProDNA binding
GO:0003824
IEA
InterProcatalytic activity
GO:0035312
IEA
InterPro5'-3' exodeoxyribonuclease activity
GO:0046872
IEA
InterPrometal ion binding

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006086 XPG-I domain
IPR006084 XPG/Rad2 endonuclease
IPR029060 PIN-like domain superfamily
IPR036279 5'-3' exonuclease, C-terminal domain superfamily
IPR008918 Helix-hairpin-helix motif, class 2
IPR037315 Exonuclease-1, H3TH domain
IPR006085 XPG, N-terminal
IPR032641 Exonuclease 1
IPR044752 Exonuclease 1-like, PIN-like domain
Mapman id Description
14.3.4 DNA damage response.homologous recombination repair (HR).exonuclease (EXO1)