Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047941 Camellia sinensis var. sinensis HOM05D000329 ORTHO05D012722 7.2e-50 200.3 102 100.0
CSS0011842 Camellia sinensis var. sinensis HOM05D000329 ORTHO05D012722 2.0e-28 129.0 139 56.8
CSS0021412 Camellia sinensis var. sinensis HOM05D000329 ORTHO05D012722 3.8e-27 124.8 138 56.5
CSS0040707 Camellia sinensis var. sinensis HOM05D000329 ORTHO05D002132 6.1e-25 117.5 155 49.0
Dinv11116 Davidia involucrata HOM05D000329 ORTHO05D002132 7.5e-23 110.5 154 46.1
Lj9C473T12 Lonicera japonica HOM05D000329 ORTHO05D002132 8.3e-22 107.1 107 56.1
Actinidia16199 Actinidia chinensis HOM05D000329 ORTHO05D002132 1.1e-21 106.7 108 55.6
Dinv38483 Davidia involucrata HOM05D000329 ORTHO05D002132 1.8e-21 105.9 154 44.2
Oeu045488.1 Olea europaea HOM05D000329 ORTHO05D002132 1.2e-20 103.2 107 57.9
Migut.I00266 Erythranthe guttata HOM05D000329 ORTHO05D002132 4.5e-20 101.3 107 54.2
SalBow7G4806 Salvia bowleyana HOM05D000329 ORTHO05D002132 1.3e-19 99.8 107 55.1
Oeu023470.1 Olea europaea HOM05D000329 ORTHO05D002132 3.8e-19 98.2 107 56.1
Cc04_g10620 Coffea canephora HOM05D000329 ORTHO05D002132 5.0e-19 97.8 107 53.3
Nn4g22484 Nelumbo nucifera HOM05D000329 ORTHO05D002132 1.9e-18 95.9 107 51.4
Manes.06G114100 Manihot esculenta HOM05D000329 ORTHO05D002132 3.3e-18 95.1 108 52.8
Manes.14G055900 Manihot esculenta HOM05D000329 ORTHO05D002132 3.3e-18 95.1 108 52.8
Nitab4.5_0002531g0100 Nicotiana tabacum HOM05D000329 ORTHO05D002132 4.3e-18 94.7 108 52.8
TAR371G0021 Trochodendron aralioides HOM05D000329 ORTHO05D002132 4.3e-18 94.7 107 51.4
Solyc03g111590.4 Solanum lycopersicum HOM05D000329 ORTHO05D002132 5.6e-18 94.4 107 50.5
Sopen03g030710 Solanum pennellii HOM05D000329 ORTHO05D002132 5.6e-18 94.4 107 50.5
CDE04G2798 Ceratophyllum demersum HOM05D000329 ORTHO05D002132 7.3e-18 94.0 107 49.5
MSTRG.11301 Avicennia marina HOM05D000329 ORTHO05D002132 9.5e-18 93.6 107 52.3
SGA_v2.0_scaffold19G08825 Striga asiatica HOM05D000329 ORTHO05D002132 9.5e-18 93.6 70 64.3
MSTRG.22937 Avicennia marina HOM05D000329 ORTHO05D002132 1.2e-17 93.2 107 52.3
Nitab4.5_0001360g0100 Nicotiana tabacum HOM05D000329 ORTHO05D002132 1.2e-17 93.2 108 51.9
QL10p005509 Quercus lobata HOM05D000329 ORTHO05D002132 1.2e-17 93.2 70 65.7
Rhsim12G0171300 Rhododendron simsii HOM05D000329 ORTHO05D002132 1.2e-17 93.2 107 51.4
DCAR_016424 Daucus carota HOM05D000329 ORTHO05D002132 1.6e-17 92.8 107 48.6
Potri.012G092400 Populus trichocarpa HOM05D000329 ORTHO05D002132 1.6e-17 92.8 108 51.9
CAN.G472.44 Capsicum annuum HOM05D000329 ORTHO05D002132 2.1e-17 92.4 107 51.4
Potri.015G089000 Populus trichocarpa HOM05D000329 ORTHO05D002132 2.1e-17 92.4 108 51.9
PGSC0003DMG400015167 Solanum tuberosum HOM05D000329 ORTHO05D002132 2.1e-17 92.4 107 49.5
TWI23G0872 Tripterygium wilfordii HOM05D000329 ORTHO05D002132 2.1e-17 92.4 110 52.7
CiPaw.12G034600 Carya illinoinensis HOM05D000329 ORTHO05D002132 3.6e-17 91.7 70 65.7
vmacro16699 Vaccinium macrocarpon HOM05D000329 ORTHO05D002132 3.6e-17 91.7 107 51.4
Lsat_1_v5_gn_1_28820 Lactuca sativa HOM05D000329 ORTHO05D002132 4.7e-17 91.3 110 50.0
Actinidia08850 Actinidia chinensis HOM05D000329 ORTHO05D002132 6.1e-17 90.9 70 62.9
RcHm_v2.0_Chr7g0191461 Rosa chinensis HOM05D000329 ORTHO05D002132 6.1e-17 90.9 111 50.5
Ah.15g095410 Amaranthus hybridus HOM05D000329 ORTHO05D002132 1.0e-16 90.1 108 50.9
Hund05623 Selenicereus undatus HOM05D000329 ORTHO05D002132 1.0e-16 90.1 107 51.4
TWI09G0874 Tripterygium wilfordii HOM05D000329 ORTHO05D002132 1.0e-16 90.1 110 51.8
TWI39G0078 Tripterygium wilfordii HOM05D000329 ORTHO05D002132 1.0e-16 90.1 110 51.8
Actinidia36778 Actinidia chinensis HOM05D000329 ORTHO05D012722 2.3e-16 89.0 70 62.9
CANSAT80G2211 Cannabis sativa HOM05D000329 ORTHO05D002132 3.0e-16 88.6 112 49.1
Duzib068G0269 Durio zibethinus HOM05D000329 ORTHO05D002132 3.0e-16 88.6 112 48.2
FAN13G2326 Fragaria x ananassa HOM05D000329 ORTHO05D002132 3.0e-16 88.6 111 50.5
Prupe.5G159200 Prunus persica HOM05D000329 ORTHO05D002132 3.0e-16 88.6 111 50.5
FvH4_5g07090 Fragaria vesca HOM05D000329 ORTHO05D002132 4.0e-16 88.2 111 49.5
FAN18G2482 Fragaria x ananassa HOM05D000329 ORTHO05D002132 4.0e-16 88.2 111 49.5
Aa31LG4G17010 Aethionema arabicum HOM05D000329 ORTHO05D002132 6.8e-16 87.4 115 47.0
CiPaw.11G013200 Carya illinoinensis HOM05D000329 ORTHO05D002132 6.8e-16 87.4 109 47.7
COL.COLO4_07696 Corchorus olitorius HOM05D000329 ORTHO05D002132 6.8e-16 87.4 111 48.6
Duzib084G0575 Durio zibethinus HOM05D000329 ORTHO05D002132 6.8e-16 87.4 111 47.7
Gohir.A07G054000 Gossypium hirsutum HOM05D000329 ORTHO05D002132 6.8e-16 87.4 111 48.6
HanXRQChr04g0100761 Helianthus annuus HOM05D000329 ORTHO05D002132 6.8e-16 87.4 71 63.4
Nn3g16603 Nelumbo nucifera HOM05D000329 ORTHO05D002132 6.8e-16 87.4 107 47.7
Haze_07287 Corylus avellana HOM05D000329 ORTHO05D002132 8.9e-16 87.0 70 64.3
FAN04G3077 Fragaria x ananassa HOM05D000329 ORTHO05D002132 8.9e-16 87.0 111 49.5
Cfa018901 Carpinus fangiana HOM05D000329 ORTHO05D002132 1.5e-15 86.3 70 64.3
MD06G1159300 Malus domestica HOM05D000329 ORTHO05D002132 1.5e-15 86.3 111 48.6
PSO782G4118 Papaver somniferum HOM05D000329 ORTHO05D002132 1.5e-15 86.3 96 49.0
Thecc.03G121300 Theobroma cacao HOM05D000329 ORTHO05D002132 1.5e-15 86.3 111 46.8
A06p19240 Brassica napus HOM05D000329 ORTHO05D002132 2.0e-15 85.9 115 47.0
BraA06t25008Z Brassica rapa HOM05D000329 ORTHO05D002132 2.0e-15 85.9 115 47.0
CARHR157180 Cardamine hirsuta HOM05D000329 ORTHO05D002132 2.0e-15 85.9 117 46.2
CDE07G1171 Ceratophyllum demersum HOM05D000329 ORTHO05D002132 2.0e-15 85.9 107 48.6
Gohir.D07G058400 Gossypium hirsutum HOM05D000329 ORTHO05D002132 2.0e-15 85.9 111 47.7
Gorai.001G061900 Gossypium raimondii HOM05D000329 ORTHO05D002132 2.0e-15 85.9 111 47.7
PGR044G2583 Punica granatum HOM05D000329 ORTHO05D002132 2.0e-15 85.9 109 50.5
Hund18533 Selenicereus undatus HOM05D000329 ORTHO05D002132 2.0e-15 85.9 107 48.6
unitig_26.g9676 Utricularia gibba HOM05D000329 ORTHO05D002132 2.6e-15 85.5 96 50.0
MD14G1165600 Malus domestica HOM05D000329 ORTHO05D002132 3.4e-15 85.1 111 46.8
ECA247G2850 Erigeron canadensis HOM05D000329 ORTHO05D002132 4.4e-15 84.7 78 57.7
Lsat_1_v5_gn_1_28420 Lactuca sativa HOM05D000329 ORTHO05D002132 4.4e-15 84.7 110 46.4
Sed0027086 Sechium edule HOM05D000329 ORTHO05D002132 4.4e-15 84.7 111 48.6
Gohir.A09G244800 Gossypium hirsutum HOM05D000329 ORTHO05D002132 5.8e-15 84.3 111 46.8
Peaxi162Scf00089g00844 Petunia axillaris HOM05D000329 ORTHO05D002132 5.8e-15 84.3 69 60.9
Carub.0005s1460 Capsella rubella HOM05D000329 ORTHO05D002132 7.5e-15 84.0 117 45.3
CARHR157190 Cardamine hirsuta HOM05D000329 ORTHO05D002132 7.5e-15 84.0 113 46.9
Gorai.006G270100 Gossypium raimondii HOM05D000329 ORTHO05D002132 7.5e-15 84.0 111 46.8
Sp5g13600 Schrenkiella parvula HOM05D000329 ORTHO05D002132 9.8e-15 83.6 116 45.7
AL5G27830 Arabidopsis lyrata HOM05D000329 ORTHO05D002132 1.7e-14 82.8 117 44.4
AL5G27840 Arabidopsis lyrata HOM05D000329 ORTHO05D002132 1.7e-14 82.8 117 44.4
AT3G48430 Arabidopsis thaliana HOM05D000329 ORTHO05D002132 1.7e-14 82.8 117 44.4
Cpa.g.sc4.49 Carica papaya HOM05D000329 ORTHO05D002132 1.7e-14 82.8 111 46.8
Thhalv10010068m.g Eutrema salsugineum HOM05D000329 ORTHO05D002132 1.7e-14 82.8 116 44.8
Gohir.D09G245700 Gossypium hirsutum HOM05D000329 ORTHO05D002132 1.7e-14 82.8 111 45.9
BcaB01g00810 Brassica carinata HOM05D000329 ORTHO05D002132 2.2e-14 82.4 116 45.7
FAN08G1572 Fragaria x ananassa HOM05D000329 ORTHO05D002132 2.2e-14 82.4 111 48.6
C08p23440 Brassica napus HOM05D000329 ORTHO05D002132 2.9e-14 82.0 117 45.3
BolC8t49972H Brassica oleracea HOM05D000329 ORTHO05D002132 2.9e-14 82.0 117 45.3
Sp5g13610 Schrenkiella parvula HOM05D000329 ORTHO05D002132 2.9e-14 82.0 116 45.7
ClCG03G003410 Citrullus lanatus HOM05D000329 ORTHO05D002132 4.9e-14 81.3 111 47.7
CsaV3_1G009200 Cucumis sativus L. HOM05D000329 ORTHO05D002132 6.4e-14 80.9 112 47.3
HPP92_013548 Vanilla planifolia HOM05D000329 ORTHO05D002132 6.4e-14 80.9 76 53.9
Atru.chr9.995 Acer truncatum HOM05D000329 ORTHO05D002132 8.3e-14 80.5 81 54.3
EL10Ac7g18056 Beta vulgaris HOM05D000329 ORTHO05D002132 8.3e-14 80.5 108 47.2
THA.LOC104821500 Tarenaya hassleriana HOM05D000329 ORTHO05D002132 8.3e-14 80.5 114 45.6
MELO3C002327.2 Cucumis melo HOM05D000329 ORTHO05D002132 1.4e-13 79.7 112 46.4
arahy.Tifrunner.gnm1.ann1.28MHAL Arachis hypogaea HOM05D000329 ORTHO05D002132 1.8e-13 79.3 70 55.7
arahy.Tifrunner.gnm1.ann1.GH32MD Arachis hypogaea HOM05D000329 ORTHO05D002132 1.8e-13 79.3 70 55.7
Thhalv10010066m.g Eutrema salsugineum HOM05D000329 ORTHO05D002132 1.8e-13 79.3 118 43.2
AUR62025745 Chenopodium quinoa HOM05D000329 ORTHO05D002132 3.2e-13 78.6 110 46.4
VMungo1309G0990 Vigna mungo HOM05D000329 ORTHO05D002132 4.1e-13 78.2 70 57.1
BcaB02g10653 Brassica carinata HOM05D000329 ORTHO05D002132 5.4e-13 77.8 75 50.7
Lj1g0003307 Lotus japonicus HOM05D000329 ORTHO05D002132 9.2e-13 77.0 70 55.7
AUR62001265 Chenopodium quinoa HOM05D000329 ORTHO05D002132 1.6e-12 76.3 114 44.7
Aqoxy5G03611 Aquilegia oxysepala HOM05D000329 ORTHO05D002132 2.0e-12 75.9 80 56.2
TPR.G38691 Trifolium pratense HOM05D000329 ORTHO05D002132 2.0e-12 75.9 96 50.0
Ca_16098_v3 Cicer arietinum L. HOM05D000329 ORTHO05D002132 2.7e-12 75.5 70 58.6
Ca_30073_v3 Cicer arietinum L. HOM05D000329 ORTHO05D002132 2.7e-12 75.5 70 58.6
Psat5g141200 Pisum sativum HOM05D000329 ORTHO05D002132 2.7e-12 75.5 96 49.0
Phvul.009G169700 Phaseolus vulgaris HOM05D000329 ORTHO05D002132 3.5e-12 75.1 70 55.7
Glyma.06G173800 Glycine max HOM05D000329 ORTHO05D002132 4.6e-12 74.7 70 54.3
Glyma.06G174000 Glycine max HOM05D000329 ORTHO05D002132 4.6e-12 74.7 70 54.3
Glyma.04G191900 Glycine max HOM05D000329 ORTHO05D002132 7.8e-12 73.9 96 45.8
Glyma.04G192000 Glycine max HOM05D000329 ORTHO05D002132 7.8e-12 73.9 96 45.8
Psat4g065080 Pisum sativum HOM05D000329 ORTHO05D002132 1.3e-11 73.2 71 52.1
Medtr3g075210 Medicago truncatula HOM05D000329 ORTHO05D002132 1.7e-11 72.8 70 55.7
Ca_05569_v3 Cicer arietinum L. HOM05D000329 ORTHO05D002132 3.9e-11 71.6 71 50.7
Ciclev10018473m.g Citrus clementina HOM05D000329 ORTHO05D002132 3.9e-11 71.6 73 54.8
Lalb_Chr12g0202071 Lupinus albus HOM05D000329 ORTHO05D002132 5.0e-11 71.2 88 47.7
DCAR_026201 Daucus carota HOM05D000329 ORTHO05D002132 8.6e-11 70.5 75 49.3
DCAR_023883 Daucus carota HOM05D000329 ORTHO05D002132 1.9e-10 69.3 70 50.0
ATR0824G004 Amborella trichopoda HOM05D000329 ORTHO05D002132 3.3e-10 68.6 74 54.1
Lalb_Chr13g0297471 Lupinus albus HOM05D000329 ORTHO05D002132 4.3e-10 68.2 88 45.5
HanXRQChr04g0108501 Helianthus annuus HOM05D000329 ORTHO05D002132 9.5e-10 67.0 79 49.4
Lj4g0026894 Lotus japonicus HOM05D000329 ORTHO05D002132 9.5e-10 67.0 70 48.6
DCAR_026202 Daucus carota HOM05D000329 ORTHO05D002132 1.2e-09 66.6 75 48.0
Phvul.003G207700 Phaseolus vulgaris HOM05D000329 ORTHO05D002132 1.6e-09 66.2 88 44.3
DCAR_023884 Daucus carota HOM05D000329 ORTHO05D002132 4.7e-09 64.7 70 48.6
VMungo1215G0735 Vigna mungo HOM05D000329 ORTHO05D002132 6.2e-09 64.3 88 44.3
Aqoxy332s002 Aquilegia oxysepala HOM05D000329 ORTHO05D012722 8.9e-08 60.5 86 45.3
Zm00001eb365340 Zea mays HOM05D000329 ORTHO05D002132 8.9e-08 60.5 65 46.2
DCAR_026203 Daucus carota HOM05D000329 ORTHO05D002132 2.0e-07 59.3 86 43.0
Os01g0907400 Oryza sativa ssp. japonica HOM05D000329 ORTHO05D002132 2.0e-07 59.3 70 41.4
Zm00001eb392170 Zea mays HOM05D000329 ORTHO05D012722 5.8e-07 57.8 65 46.2
Zm00001eb144180 Zea mays HOM05D000329 ORTHO05D012722 7.5e-07 57.4 63 46.0
DCAR_032188 Daucus carota HOM05D000329 ORTHO05D012722 9.8e-07 57.0 70 47.1
Solyc04g028580.3 Solanum lycopersicum HOM05D000329 ORTHO05D002132 8.3e-06 53.9 76 46.1
Sopen04g015200 Solanum pennellii HOM05D000329 ORTHO05D002132 8.3e-06 53.9 76 46.1
PGSC0003DMG400010853 Solanum tuberosum HOM05D000329 ORTHO05D002132 8.3e-06 53.9 76 46.1


User provided reference genes

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