Gene: Solyc04g028580.3
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc04g028580.3
- Transcript Identifier Solyc04g028580.3.1
- Gene Type Coding gene
- Location SL4.0ch04 : 14112805-14113845 : positive
Gene Family Information
- ID HOM05D000329
- #Genes/#Species 1418/100
- Phylogenetic origin
- ID ORTHO05D002132
- #Genes/#Species 313/95
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid Solyc04g028580.3.1
- uniprot A0A3Q7FZZ0
- gene_id Solyc04g028580
Descriptions
- Description Transcription factor jumonji (Jmj) family protein / zinc finger (C5HC2 type) family protein (AHRD V3.3 *-* A0A1P8BAS6_ARATH)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0034721 | IEA | GOA Database | histone H3-K4 demethylation, trimethyl-H3-K4-specific | |
| GO:0016577 | IEA | GOA Database | histone demethylation | |
| GO:0006338 | IBA | GOA Database | chromatin remodeling | |
| GO:0009826 | ISO | PLAZA Integrative Orthology | unidimensional cell growth | AT5G04240 |
| GO:0048577 | ISO | PLAZA Integrative Orthology | negative regulation of short-day photoperiodism, flowering | AT5G04240 |
| GO:0006355 | ISO | PLAZA Integrative Orthology | regulation of transcription, DNA-templated | AT5G04240 |
| GO:0033169 | ISO | PLAZA Integrative Orthology | histone H3-K9 demethylation | AT5G04240 |
| GO:0048579 | ISO | PLAZA Integrative Orthology | negative regulation of long-day photoperiodism, flowering | AT5G04240 |
| GO:0009741 | ISO | PLAZA Integrative Orthology | response to brassinosteroid | AT5G04240 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0034647 | IBA | GOA Database | histone demethylase activity (H3-trimethyl-K4 specific) | |
| GO:0032452 | IBA | GOA Database | histone demethylase activity | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G04240 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IBA | GOA Database | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |