Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.6e-140 502.7 244 100.0
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 4.6e-127 458.0 245 93.5
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 4.6e-127 458.0 243 90.5
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 2.3e-118 429.1 245 85.7
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 2.5e-117 425.6 243 84.4
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 4.3e-117 424.9 241 84.6
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 2.8e-116 422.2 244 82.0
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 1.1e-112 410.2 241 81.7
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 2.7e-111 405.6 244 79.1
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 1.2e-106 390.2 244 75.4
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 1.2e-103 380.2 244 72.1
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 6.0e-103 377.9 242 72.7
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 8.7e-102 374.0 244 73.8
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 4.3e-101 371.7 244 73.0
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 7.4e-101 370.9 243 74.5
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.6e-100 369.8 243 72.4
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 2.8e-100 369.0 245 71.4
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 3.7e-100 368.6 243 72.0
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.1e-99 367.1 243 72.0
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 1.8e-99 366.3 244 72.1
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 2.4e-99 365.9 244 70.1
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 2.4e-99 365.9 235 73.2
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 9.0e-99 364.0 238 72.7
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 1.2e-98 363.6 235 73.6
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 2.6e-98 362.5 244 70.9
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 3.4e-98 362.1 241 68.0
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 7.6e-98 360.9 243 71.2
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 6.4e-97 357.8 237 72.6
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 1.1e-96 357.1 243 70.0
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 1.9e-96 356.3 243 70.4
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 5.5e-96 354.8 243 68.3
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 1.2e-95 353.6 237 70.0
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 1.6e-95 353.2 237 69.2
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 4.6e-95 351.7 238 69.3
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 4.6e-95 351.7 243 68.7
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 6.0e-95 351.3 235 69.4
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 1.8e-94 349.7 233 71.2
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 5.1e-94 348.2 235 70.2
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 5.1e-94 348.2 233 71.2
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 6.7e-94 347.8 235 69.4
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 1.5e-93 346.7 235 69.4
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 2.5e-93 345.9 239 69.0
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 2.5e-93 345.9 236 69.5
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 3.3e-93 345.5 244 68.4
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 4.3e-93 345.1 235 70.6
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.1e-91 340.5 233 70.0
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 1.4e-91 340.1 235 68.5
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 4.0e-91 338.6 236 69.1
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 4.0e-91 338.6 236 69.1
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 9.0e-91 337.4 243 66.7
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 3.4e-90 335.5 236 67.8
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 5.8e-90 334.7 246 65.0
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 1.0e-89 334.0 235 66.8
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 1.3e-89 333.6 243 64.2
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 1.7e-89 333.2 236 69.1
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 2.2e-89 332.8 257 65.0
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 2.9e-89 332.4 259 64.9
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 8.4e-89 330.9 242 65.3
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 1.4e-88 330.1 237 67.5
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.5e-88 329.3 242 64.5
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 3.2e-88 328.9 216 72.7
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 3.2e-88 328.9 246 66.7
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 9.3e-88 327.4 235 66.8
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 2.7e-87 325.9 244 65.2
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 2.7e-87 325.9 240 67.5
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 6.0e-87 324.7 245 66.1
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 2.3e-86 322.8 238 64.7
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 2.3e-86 322.8 240 67.1
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 3.9e-86 322.0 245 65.7
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 5.1e-86 321.6 242 64.5
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 5.1e-86 321.6 249 64.7
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.9e-85 319.7 245 64.5
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 2.5e-85 319.3 245 64.9
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.3e-84 317.0 245 64.9
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 1.3e-84 317.0 241 66.0
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 1.4e-83 313.5 243 66.3
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 2.4e-83 312.8 236 61.9
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 3.1e-83 312.4 238 62.2
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 3.1e-83 312.4 245 63.7
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 3.1e-83 312.4 242 61.6
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 4.1e-83 312.0 249 63.1
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 5.3e-83 311.6 241 62.2
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 6.9e-83 311.2 245 63.7
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 4.5e-82 308.5 235 64.7
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 4.5e-82 308.5 241 63.5
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 7.6e-82 307.8 237 63.3
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 7.6e-82 307.8 237 63.3
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 1.7e-81 306.6 244 61.9
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 1.7e-81 306.6 248 60.9
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 1.7e-81 306.6 243 63.8
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 2.2e-81 306.2 242 63.6
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 2.2e-81 306.2 242 63.6
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 3.8e-81 305.4 206 70.4
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 3.8e-81 305.4 218 67.4
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 5.0e-81 305.1 241 63.9
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 8.5e-81 304.3 224 67.9
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 4.2e-80 302.0 237 61.2
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 2.7e-79 299.3 233 60.5
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 3.6e-79 298.9 228 61.4
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 4.6e-79 298.5 240 60.8
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 6.1e-79 298.1 235 63.0
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 6.1e-79 298.1 241 63.1
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 1.4e-78 297.0 248 60.5
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.4e-78 297.0 248 60.5
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 1.8e-78 296.6 244 60.2
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.3e-78 296.2 237 60.3
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 3.9e-78 295.4 242 63.2
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.9e-77 293.1 242 62.4
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 7.4e-77 291.2 238 59.7
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 9.7e-77 290.8 244 60.2
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.7e-76 290.0 203 66.5
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 2.8e-76 289.3 245 56.3
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 6.3e-76 288.1 238 59.2
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 6.3e-76 288.1 242 59.1
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 1.8e-75 286.6 238 58.0
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 1.8e-75 286.6 239 58.6
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 2.4e-75 286.2 238 58.8
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 4.1e-75 285.4 236 59.3
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 4.1e-75 285.4 236 58.9
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 5.3e-75 285.0 238 57.6
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 9.1e-75 284.3 203 66.5
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 9.1e-75 284.3 238 58.8
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 1.5e-74 283.5 240 60.0
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 2.6e-74 282.7 238 58.0
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 3.4e-74 282.3 238 58.4
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 1.0e-73 280.8 236 58.1
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 1.0e-73 280.8 236 58.1
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.7e-73 280.0 216 61.6
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 2.9e-73 279.3 244 60.2
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 8.5e-73 277.7 236 57.6
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 8.5e-73 277.7 238 57.6
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 8.5e-73 277.7 238 57.6
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 4.2e-72 275.4 237 55.3
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 2.1e-71 273.1 238 55.5
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 2.1e-71 273.1 235 57.0
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 4.7e-71 271.9 238 56.3
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 4.7e-71 271.9 244 55.7
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 1.0e-70 270.8 242 57.4
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 1.1e-69 267.3 235 56.6
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 9.7e-69 264.2 235 57.9
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 2.8e-68 262.7 238 56.3
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 4.8e-68 261.9 224 57.6
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 1.2e-66 257.3 246 53.3
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 1.5e-66 256.9 258 52.7
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 1.7e-65 253.4 233 51.9
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 6.5e-65 251.5 175 68.6
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 3.2e-64 249.2 210 57.1
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 3.0e-62 242.7 223 54.7
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 2.0e-61 240.0 184 61.4
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 9.7e-61 237.7 231 51.1
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 1.1e-59 234.2 238 50.0
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.6e-58 230.3 163 66.3
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 3.8e-57 225.7 158 67.7
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 3.2e-56 222.6 242 48.3
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.2e-55 220.7 242 50.4
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 1.6e-55 220.3 157 66.9
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 4.7e-55 218.8 185 62.2
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 1.1e-51 207.6 163 57.7
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 9.1e-51 204.5 200 55.0
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 2.9e-49 199.5 259 40.9
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 5.5e-48 195.3 208 50.5
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 6.1e-47 191.8 129 69.8
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 2.3e-46 189.9 262 39.7
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 6.6e-41 171.8 191 49.7
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 4.1e-35 152.5 101 70.3
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 7.0e-35 151.8 116 63.8
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 9.2e-35 151.4 156 50.0
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 2.0e-34 150.2 152 53.3
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.1e-30 136.3 107 58.9
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 6.8e-30 135.2 120 57.5
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 6.8e-30 135.2 93 71.0
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 7.5e-29 131.7 118 56.8
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 1.2e-23 114.4 166 37.3
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 3.6e-23 112.8 73 72.6
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 2.6e-21 106.7 89 57.3
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 4.4e-21 105.9 88 53.4
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 6.4e-20 102.1 191 31.9
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 7.0e-19 98.6 132 45.5
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 1.3e-17 94.4 96 46.9
CARHR273910 Cardamine hirsuta HOM05D003786 ORTHO05D004375 8.6e-17 91.7 80 55.0
PRCOL_00003701 Prasinoderma coloniale HOM05D003786 ORTHO05D004375 1.8e-14 84.0 162 30.2
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 4.1e-11 72.8 170 28.8
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 7.1e-11 72.0 54 64.8


User provided reference genes

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