Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 9.7e-152 540.0 259 100.0
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 8.3e-127 457.2 243 90.5
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.3e-119 433.3 244 88.5
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 3.7e-119 431.8 245 86.1
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 8.3e-119 430.6 241 86.3
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 8.3e-119 430.6 244 86.1
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 1.0e-116 423.7 243 82.7
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 4.3e-115 418.3 241 83.8
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 6.0e-109 397.9 243 77.0
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 4.3e-107 391.7 243 76.5
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 2.0e-104 382.9 243 72.4
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 4.9e-103 378.3 244 72.5
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 1.9e-102 376.3 243 75.7
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 5.4e-102 374.8 243 74.5
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 7.1e-102 374.4 243 73.3
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 2.7e-101 372.5 244 73.4
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 3.5e-101 372.1 235 75.3
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 1.7e-100 369.8 243 73.7
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.5e-99 366.7 244 70.9
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 3.3e-99 365.5 244 70.5
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 3.3e-99 365.5 247 71.3
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 1.2e-98 363.6 244 70.5
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 1.6e-98 363.2 246 71.5
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 3.6e-98 362.1 244 70.1
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 6.8e-97 357.8 238 71.0
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 6.8e-97 357.8 241 67.6
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 8.9e-97 357.5 243 69.1
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 2.0e-96 356.3 235 71.9
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 1.3e-95 353.6 249 68.7
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 1.7e-95 353.2 244 68.9
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 1.7e-95 353.2 245 67.3
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 2.2e-95 352.8 244 69.7
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 4.9e-95 351.7 243 68.3
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 6.4e-95 351.3 237 70.0
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 1.1e-94 350.5 239 69.0
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 2.4e-94 349.4 243 68.7
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 9.2e-94 347.4 242 67.4
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.2e-93 347.1 235 70.6
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 1.6e-93 346.7 243 67.9
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 4.6e-93 345.1 237 69.2
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 1.3e-92 343.6 242 66.9
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 2.3e-92 342.8 235 68.1
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 3.0e-92 342.4 243 67.9
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 3.0e-92 342.4 243 67.5
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 3.9e-92 342.0 236 69.1
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 3.9e-92 342.0 236 69.1
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 3.3e-91 339.0 235 67.7
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 3.3e-91 339.0 239 67.8
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 3.3e-91 339.0 236 68.2
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 1.4e-89 333.6 253 64.0
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 1.8e-89 333.2 237 67.9
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.1e-89 332.4 243 65.8
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 4.0e-89 332.0 236 67.8
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 4.0e-89 332.0 243 63.4
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 9.0e-89 330.9 243 65.0
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 1.2e-88 330.5 242 65.3
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 2.6e-88 329.3 258 64.0
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 3.4e-88 328.9 243 65.0
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 4.4e-88 328.6 261 64.0
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 4.4e-88 328.6 216 72.2
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 4.4e-88 328.6 249 65.1
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 7.6e-88 327.8 235 64.7
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 6.4e-87 324.7 248 64.5
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 1.4e-86 323.6 235 66.4
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 2.4e-86 322.8 236 68.2
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.2e-85 320.5 248 63.7
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 1.2e-85 320.5 247 62.3
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 3.5e-85 318.9 248 64.1
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.0e-84 317.4 247 62.8
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 1.0e-84 317.4 240 66.2
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.3e-84 317.0 248 63.3
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 2.3e-84 316.2 238 63.9
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 3.9e-84 315.5 236 62.3
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 5.1e-84 315.1 236 65.3
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 8.7e-84 314.3 240 65.8
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 3.3e-83 312.4 244 65.2
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.6e-82 310.1 247 61.9
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 3.6e-82 308.9 247 61.9
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 3.6e-82 308.9 254 62.2
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 4.8e-82 308.5 241 64.7
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 1.1e-81 307.4 218 67.4
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 1.5e-80 303.5 241 62.7
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 2.0e-80 303.1 254 61.0
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 2.6e-80 302.8 244 61.5
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 4.5e-80 302.0 237 61.6
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 4.5e-80 302.0 237 61.6
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 4.5e-80 302.0 235 63.4
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 9.9e-80 300.8 241 60.2
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 1.3e-79 300.4 238 60.1
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 1.3e-79 300.4 206 68.4
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 1.7e-79 300.1 241 63.1
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 2.9e-79 299.3 242 60.7
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 2.9e-79 299.3 243 62.6
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 2.9e-79 299.3 224 67.0
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 6.4e-79 298.1 242 63.2
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 1.9e-78 296.6 242 62.0
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 1.9e-78 296.6 242 62.0
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 1.9e-78 296.6 248 60.5
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.9e-78 296.6 248 60.5
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 2.4e-78 296.2 238 61.3
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 2.4e-78 296.2 254 59.8
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 3.2e-78 295.8 248 58.9
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 4.2e-78 295.4 237 59.9
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 7.1e-78 294.7 241 61.8
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 2.1e-77 293.1 228 60.5
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.7e-77 292.7 203 67.5
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 4.6e-77 292.0 238 60.9
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 4.6e-77 292.0 240 59.2
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 6.0e-77 291.6 242 59.5
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 6.0e-77 291.6 251 59.0
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 7.9e-77 291.2 238 60.1
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 1.3e-76 290.4 239 60.3
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 1.3e-76 290.4 256 59.4
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 1.3e-76 290.4 245 57.1
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.3e-76 289.7 237 59.1
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 2.3e-76 289.7 233 59.2
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 3.0e-76 289.3 242 59.1
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 3.9e-76 288.9 238 58.8
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 5.1e-76 288.5 238 60.5
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 6.7e-76 288.1 243 59.7
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 8.7e-76 287.7 238 58.8
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 8.7e-76 287.7 203 67.5
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 1.1e-75 287.3 240 59.2
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 2.5e-75 286.2 241 61.8
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 5.6e-75 285.0 236 59.7
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 5.6e-75 285.0 236 59.7
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 1.6e-74 283.5 238 59.2
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 3.7e-74 282.3 238 59.2
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 3.7e-74 282.3 238 59.2
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 1.2e-72 277.3 238 57.1
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.0e-72 276.6 216 61.1
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 2.6e-72 276.2 238 57.1
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 3.4e-72 275.8 236 57.6
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 3.4e-72 275.8 242 57.9
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 4.5e-72 275.4 240 58.3
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 5.8e-72 275.0 239 55.6
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 9.3e-70 267.7 235 57.0
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 1.2e-69 267.3 243 56.4
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 1.6e-69 266.9 249 53.8
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 1.0e-68 264.2 247 55.1
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 1.3e-68 263.8 224 58.9
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 1.8e-68 263.5 258 54.3
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 5.6e-67 258.5 233 53.2
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 7.4e-67 258.1 261 51.0
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 9.6e-67 257.7 238 55.5
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 6.2e-66 255.0 212 58.5
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 2.6e-64 249.6 177 66.7
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 3.4e-64 249.2 231 53.2
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 7.1e-62 241.5 200 57.5
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 3.5e-61 239.2 238 52.1
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.0e-60 237.7 163 67.5
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 5.1e-60 235.3 223 53.8
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.2e-58 229.9 158 69.0
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 3.1e-57 226.1 242 49.2
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 6.9e-57 224.9 157 67.5
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 3.8e-55 219.2 185 61.6
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 5.0e-55 218.8 243 50.6
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 7.2e-54 214.9 163 60.1
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 4.3e-51 205.7 200 56.5
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 1.7e-50 203.8 269 42.4
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 3.2e-46 189.5 208 50.0
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 1.6e-45 187.2 262 38.5
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 1.8e-44 183.7 129 67.4
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.5e-40 169.5 191 49.2
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 1.5e-35 154.1 101 71.3
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 1.4e-33 147.5 136 55.1
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 3.1e-33 146.4 116 62.1
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 2.0e-32 143.7 153 49.7
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.9e-31 139.8 107 61.7
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 1.9e-30 137.1 176 43.8
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 1.2e-29 134.4 118 55.9
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.0e-28 131.3 93 68.8
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 5.9e-24 115.5 73 74.0
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 1.0e-23 114.8 166 38.0
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 5.5e-22 109.0 88 53.4
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 7.2e-22 108.6 89 58.4
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 1.3e-18 97.8 96 49.0
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 2.2e-18 97.1 191 30.9
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 1.1e-17 94.7 132 43.9
CARHR273910 Cardamine hirsuta HOM05D003786 ORTHO05D004375 4.1e-17 92.8 80 55.0
PRCOL_00003701 Prasinoderma coloniale HOM05D003786 ORTHO05D004375 3.3e-14 83.2 181 28.2
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 3.4e-11 73.2 54 64.8
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 8.3e-10 68.6 170 27.6


User provided reference genes

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