Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0035690 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 3762.6 1905 100.0
CSS0014731 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 3674.0 1886 98.9
Actinidia32600 Actinidia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 3010.3 1916 80.5
Rhsim13G0062700 Rhododendron simsii HOM05D001072 ORTHO05D006807 0.0e+00 2973.7 1920 79.1
vmacro02906 Vaccinium macrocarpon HOM05D001072 ORTHO05D006807 0.0e+00 2595.1 1923 71.6
QL01p025823 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 2501.5 1922 66.5
Haze_24430 Corylus avellana HOM05D001072 ORTHO05D006807 0.0e+00 2470.3 1969 65.5
CiPaw.13G067600 Carya illinoinensis HOM05D001072 ORTHO05D006807 0.0e+00 2447.9 1921 65.3
Atru.chr1.2576 Acer truncatum HOM05D001072 ORTHO05D006807 0.0e+00 2392.5 1928 64.6
Duzib168G2177 Durio zibethinus HOM05D001072 ORTHO05D006807 0.0e+00 2391.3 1922 63.7
Thecc.09G359500 Theobroma cacao HOM05D001072 ORTHO05D006807 0.0e+00 2383.6 1926 63.7
Prupe.6G045900 Prunus persica HOM05D001072 ORTHO05D006807 0.0e+00 2379.7 1928 63.8
Manes.18G136800 Manihot esculenta HOM05D001072 ORTHO05D006807 0.0e+00 2368.2 1924 63.4
RcHm_v2.0_Chr5g0071961 Rosa chinensis HOM05D001072 ORTHO05D006807 0.0e+00 2340.8 1922 63.2
MD03G1058100 Malus domestica HOM05D001072 ORTHO05D006807 0.0e+00 2338.1 1923 63.2
TAR623G1063 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 2331.2 1941 62.7
COL.COLO4_11172 Corchorus olitorius HOM05D001072 ORTHO05D006807 0.0e+00 2324.3 1940 62.0
Gohir.D03G143700 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 2323.9 1924 61.7
Gohir.A03G024800 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 2303.5 1924 61.6
FvH4_3g39950 Fragaria vesca HOM05D001072 ORTHO05D006807 0.0e+00 2290.8 1925 61.6
Potri.019G126000 Populus trichocarpa HOM05D001072 ORTHO05D006807 0.0e+00 2290.0 1927 62.4
Lj2A1095G44 Lonicera japonica HOM05D001072 ORTHO05D006807 0.0e+00 2289.2 1788 66.7
Gorai.003G151000 Gossypium raimondii HOM05D001072 ORTHO05D006807 0.0e+00 2287.7 1935 61.1
TAR623G0321 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 2285.4 1941 61.9
FAN25G0381 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 2275.7 1925 61.4
FAN11G0037 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 2274.6 1962 60.7
Cc01_g15000 Coffea canephora HOM05D001072 ORTHO05D006807 0.0e+00 2272.3 1917 61.7
Sabra19G0130600 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 2264.2 1927 62.2
CANSAT54G0981 Cannabis sativa HOM05D001072 ORTHO05D006807 0.0e+00 2256.9 1924 61.1
Sabra19G0124000 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 2250.3 1952 61.4
LjContig00141g0020287 Lotus japonicus HOM05D001072 ORTHO05D006807 0.0e+00 2194.1 1924 59.5
Nitab4.5_0000684g0150 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 2187.9 1919 59.7
Migut.D00839 Erythranthe guttata HOM05D001072 ORTHO05D006807 0.0e+00 2187.5 1918 59.3
Glyma.02G232900 Glycine max HOM05D001072 ORTHO05D006807 0.0e+00 2183.7 1919 59.6
Sopen09g017350 Solanum pennellii HOM05D001072 ORTHO05D006807 0.0e+00 2183.3 1917 59.4
Lalb_Chr04g0251881 Lupinus albus HOM05D001072 ORTHO05D006807 0.0e+00 2182.5 1922 59.2
Oeu050029.1 Olea europaea HOM05D001072 ORTHO05D006807 0.0e+00 2177.9 1859 60.6
TWI31G1315 Tripterygium wilfordii HOM05D001072 ORTHO05D006807 0.0e+00 2166.7 1927 59.2
Lsat_1_v5_gn_8_108741 Lactuca sativa HOM05D001072 ORTHO05D006807 0.0e+00 2152.5 1922 59.4
MELO3C020494.2 Cucumis melo HOM05D001072 ORTHO05D006807 0.0e+00 2149.4 1929 58.3
MSTRG.21246 Avicennia marina HOM05D001072 ORTHO05D006807 0.0e+00 2146.7 1916 58.1
FAN21G1089 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 2140.2 2100 55.8
Nn2g11057 Nelumbo nucifera HOM05D001072 ORTHO05D006807 0.0e+00 2139.8 1940 59.0
CsaV3_1G036730 Cucumis sativus L. HOM05D001072 ORTHO05D006807 0.0e+00 2136.7 1930 58.1
Ca_05680_v3 Cicer arietinum L. HOM05D001072 ORTHO05D006807 0.0e+00 2134.8 1923 57.9
Ciclev10000015m.g Citrus clementina HOM05D001072 ORTHO05D006807 0.0e+00 2130.5 1950 58.7
Cpa.g.sc2.338 Carica papaya HOM05D001072 ORTHO05D006807 0.0e+00 2129.4 1917 59.2
Medtr5g074510 Medicago truncatula HOM05D001072 ORTHO05D006807 0.0e+00 2110.1 1926 57.6
Psat2g054080 Pisum sativum HOM05D001072 ORTHO05D006807 0.0e+00 2105.5 1926 57.4
Phvul.008G250900 Phaseolus vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 2104.7 1920 57.3
TPR.G25340 Trifolium pratense HOM05D001072 ORTHO05D006807 0.0e+00 2102.8 1976 56.4
arahy.Tifrunner.gnm1.ann1.QD7CJP Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 2101.2 1924 57.7
FAN16G0450 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 2101.2 2422 49.3
arahy.Tifrunner.gnm1.ann1.XX59BG Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 2099.7 1925 57.6
HanXRQChr10g0312111 Helianthus annuus HOM05D001072 ORTHO05D006807 0.0e+00 2095.9 1917 57.9
Sed0011357 Sechium edule HOM05D001072 ORTHO05D006807 0.0e+00 2083.1 1928 57.2
ECA236G3191 Erigeron canadensis HOM05D001072 ORTHO05D006807 0.0e+00 2055.8 1872 58.5
Sc06g0008120 Simmondsia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 2051.6 1919 56.5
SGA_v2.0_scaffold20G09297 Striga asiatica HOM05D001072 ORTHO05D006807 0.0e+00 2047.3 1964 55.3
ClCG03G000170 Citrullus lanatus HOM05D001072 ORTHO05D006807 0.0e+00 2045.0 1925 56.3
Aqoxy4G02167 Aquilegia oxysepala HOM05D001072 ORTHO05D006807 0.0e+00 2042.3 1936 56.8
VMungo0647G0153 Vigna mungo HOM05D001072 ORTHO05D006807 0.0e+00 2029.2 2044 54.0
PGR119G0697 Punica granatum HOM05D001072 ORTHO05D006807 0.0e+00 2016.5 1923 56.5
PSO170G6524 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 2013.4 1933 55.5
PSO017G5353 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 2010.7 1931 55.4
Peaxi162Scf00055g00202 Petunia axillaris HOM05D001072 ORTHO05D006807 0.0e+00 2003.4 1822 57.8
Dinv12245 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1994.5 1323 76.0
DCAR_018643 Daucus carota HOM05D001072 ORTHO05D006807 0.0e+00 1991.5 1924 55.4
Nitab4.5_0000046g0010 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1989.2 1925 56.0
THA.LOC104810689 Tarenaya hassleriana HOM05D001072 ORTHO05D006807 0.0e+00 1988.0 1916 55.5
AUR62025311 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1967.2 1916 54.1
AUR62028316 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1959.9 1915 53.7
Thhalv10012416m.g Eutrema salsugineum HOM05D001072 ORTHO05D006807 0.0e+00 1893.2 1911 53.3
MBI03_g13043_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 0.0e+00 1878.2 1838 54.3
EL10Ac8g18974 Beta vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1860.5 1917 52.2
Sp6g20090 Schrenkiella parvula HOM05D001072 ORTHO05D006807 0.0e+00 1856.6 1919 52.6
A03p12250 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1848.9 1907 52.4
CARHR272240 Cardamine hirsuta HOM05D001072 ORTHO05D006807 0.0e+00 1845.9 1911 52.5
Carub.0008s1900 Capsella rubella HOM05D001072 ORTHO05D006807 0.0e+00 1845.5 1912 52.6
AL8G34570 Arabidopsis lyrata HOM05D001072 ORTHO05D006807 0.0e+00 1842.0 1909 52.4
BolC9t57885H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1841.6 1926 52.5
BcaC04g19869 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1840.5 1905 52.8
AT5G58410 Arabidopsis thaliana HOM05D001072 ORTHO05D006807 0.0e+00 1834.7 1914 51.8
BcaB08g36177 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1831.6 1905 52.5
ATR0681G329 Amborella trichopoda HOM05D001072 ORTHO05D006807 0.0e+00 1830.5 1969 50.6
BolC3t13881H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1830.5 1931 52.1
A10p15850 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1829.3 1905 52.4
Dinv09685 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1829.3 1211 76.5
C09p50300 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1828.5 1906 52.5
BraA03t10536Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1820.4 1922 52.2
Hund08884 Selenicereus undatus HOM05D001072 ORTHO05D006807 0.0e+00 1820.4 1859 52.7
C03p14380 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1819.7 1906 52.4
BraA10t43640Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1815.0 1918 52.0
CDE04G3416 Ceratophyllum demersum HOM05D001072 ORTHO05D006807 0.0e+00 1731.8 1942 48.2
BcaB01g04524 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1724.9 1906 50.6
Aa31LG11G200 Aethionema arabicum HOM05D001072 ORTHO05D006807 0.0e+00 1564.3 1701 49.6
Zm00001eb093280 Zea mays HOM05D001072 ORTHO05D006807 0.0e+00 1544.6 1954 44.0
Os01g0977600 Oryza sativa ssp. japonica HOM05D001072 ORTHO05D006807 0.0e+00 1544.3 1954 44.7
Eucgr.J01850 Eucalyptus grandis HOM05D001072 ORTHO05D006807 0.0e+00 1476.5 1582 50.9
HPP92_012011 Vanilla planifolia HOM05D001072 ORTHO05D006807 0.0e+00 1441.8 1957 42.6
PGSC0003DMG402017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 0.0e+00 1300.0 1101 60.4
Oeu050026.1 Olea europaea HOM05D001072 ORTHO05D006807 0.0e+00 1221.1 1693 42.8
QL04p095953 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 1208.0 894 69.1
Solyc09g055260.4 Solanum lycopersicum HOM05D001072 ORTHO05D006807 0.0e+00 1195.3 1135 56.1
Mapoly0076s0060 Marchantia polymorpha HOM05D001072 ORTHO05D006807 0.0e+00 1169.1 2065 35.8
AagrBONN_evm.TU.Sc2ySwM_344.918 Anthoceros agrestis HOM05D001072 ORTHO05D006807 0.0e+00 1106.7 2048 34.9
unitig_0.g201 Utricularia gibba HOM05D001072 ORTHO05D006807 1.1e-289 1001.1 1101 49.6
Pp3c11_1040 Physcomitrium patens HOM05D001072 ORTHO05D006807 1.1e-287 994.6 1983 33.6
SMO367G0609 Selaginella moellendorffii HOM05D001072 ORTHO05D006807 1.3e-280 971.1 1921 33.5
PGSC0003DMG401017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 5.1e-250 869.4 783 59.1
SEGI_04376 Sequoiadendron giganteum HOM05D001072 ORTHO05D006807 5.0e-213 746.5 904 44.5
HPP92_011994 Vanilla planifolia HOM05D001072 ORTHO05D006807 1.5e-156 558.9 704 45.3
Dinv12246 Davidia involucrata HOM05D001072 ORTHO05D006807 4.4e-100 371.3 261 69.7
Dinv12247 Davidia involucrata HOM05D001072 ORTHO05D006807 1.2e-76 293.5 173 86.7
Psat0s2465g0160 Pisum sativum HOM05D001072 ORTHO05D006807 2.6e-68 265.8 166 79.5
PRCOL_00002801 Prasinoderma coloniale HOM05D001072 ORTHO05D006807 7.6e-68 264.2 565 31.0
unitig_0.g202 Utricularia gibba HOM05D001072 ORTHO05D006807 5.6e-55 221.5 218 56.4
CBR_g30899 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-54 219.5 642 28.2
MCO05G029 Micromonas commoda HOM05D001072 ORTHO05D006807 4.0e-53 215.3 218 46.3
MBI03_g13045_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 1.2e-52 213.8 137 78.1
Cre06.g252100 Chlamydomonas reinhardtii HOM05D001072 ORTHO05D006807 3.5e-49 202.2 218 44.5
CBR_g30901 Chara braunii HOM05D001072 ORTHO05D006807 7.4e-47 194.5 392 30.6
QL04p095957 Quercus lobata HOM05D001072 ORTHO05D006807 2.4e-45 189.5 166 56.6
Psat4g121040 Pisum sativum HOM05D001072 ORTHO05D006807 3.7e-38 165.6 103 76.7
RcHm_v2.0_Chr5g0061981 Rosa chinensis HOM05D001072 ORTHO05D006807 2.8e-30 139.4 210 39.0
Lj2A1095G45 Lonicera japonica HOM05D001072 ORTHO05D006807 2.6e-28 132.9 125 57.6
Cfa024964 Carpinus fangiana HOM05D001072 ORTHO05D006807 1.0e-27 131.0 209 31.1
Ah.09g228980 Amaranthus hybridus HOM05D001072 ORTHO05D006807 2.2e-27 129.8 103 67.0
Glyma.14G200551 Glycine max HOM05D001072 ORTHO05D006807 1.2e-25 124.0 95 64.2
Psat3g023200 Pisum sativum HOM05D001072 ORTHO05D006807 3.9e-24 119.0 82 69.5
TPR.G25341 Trifolium pratense HOM05D001072 ORTHO05D006807 1.5e-20 107.1 83 68.7
Ca_27012_v3 Cicer arietinum L. HOM05D000103 ORTHO05D006807 1.7e-19 103.6 195 33.3
Cpa.g.sc2.314 Carica papaya HOM05D001072 ORTHO05D006807 1.9e-18 100.1 125 41.6
PSO017G5325 Papaver somniferum HOM05D001072 ORTHO05D006807 2.6e-12 79.7 62 54.8
PSO170G1906 Papaver somniferum HOM05D001072 ORTHO05D006807 2.2e-11 76.6 62 53.2
Psat0s3437g0080 Pisum sativum HOM05D001072 ORTHO05D006807 6.7e-08 65.1 64 54.7


User provided reference genes

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