Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 1.1e-84 317.4 168 100.0
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 1.9e-81 306.6 168 97.6
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 7.4e-78 294.7 165 92.1
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 2.2e-77 293.1 164 92.1
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 2.4e-76 289.7 164 90.2
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 4.1e-76 288.9 164 89.6
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 7.0e-76 288.1 168 88.1
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 9.1e-76 287.7 165 89.7
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 1.6e-75 287.0 164 90.9
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 1.6e-75 287.0 166 89.2
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 2.0e-75 286.6 165 89.7
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 4.5e-75 285.4 165 89.1
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 4.5e-75 285.4 165 91.5
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 5.9e-75 285.0 163 90.8
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 7.7e-75 284.6 165 88.5
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 2.2e-74 283.1 168 87.5
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 1.9e-73 280.0 168 88.1
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 2.5e-73 279.6 164 88.4
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 4.2e-73 278.9 167 86.2
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 2.1e-72 276.6 163 89.0
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 2.7e-72 276.2 166 87.3
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 1.0e-71 274.2 168 85.7
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 1.0e-71 274.2 168 85.7
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 1.0e-71 274.2 167 85.6
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 1.4e-71 273.9 167 85.0
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 5.2e-71 271.9 167 85.0
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 5.2e-71 271.9 167 85.0
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 6.7e-71 271.6 165 86.1
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 8.8e-71 271.2 167 86.2
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 8.8e-71 271.2 164 87.2
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 8.8e-71 271.2 167 85.6
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 8.8e-71 271.2 165 86.7
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 1.5e-70 270.4 154 89.6
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 1.5e-70 270.4 165 86.1
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 2.0e-70 270.0 166 86.7
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 2.0e-70 270.0 164 86.0
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 2.0e-70 270.0 154 89.0
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 2.6e-70 269.6 165 87.9
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 2.6e-70 269.6 167 85.6
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 3.3e-70 269.2 158 85.4
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 3.3e-70 269.2 171 82.5
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 4.4e-70 268.9 166 83.1
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 4.4e-70 268.9 171 82.5
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 5.7e-70 268.5 153 90.2
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 5.7e-70 268.5 167 84.4
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 7.5e-70 268.1 157 86.0
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 7.5e-70 268.1 164 84.1
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 9.7e-70 267.7 164 84.1
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 9.7e-70 267.7 167 85.6
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 9.7e-70 267.7 165 82.4
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 1.3e-69 267.3 167 83.2
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 1.3e-69 267.3 167 82.6
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 1.7e-69 266.9 163 87.7
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 1.7e-69 266.9 163 87.7
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 1.7e-69 266.9 170 84.1
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 3.7e-69 265.8 176 81.8
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 4.8e-69 265.4 152 90.8
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 4.8e-69 265.4 164 84.1
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 4.8e-69 265.4 168 82.1
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 4.8e-69 265.4 152 90.8
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 6.3e-69 265.0 167 83.8
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 6.3e-69 265.0 167 83.8
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 6.3e-69 265.0 167 83.8
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 8.2e-69 264.6 174 83.3
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 8.2e-69 264.6 165 85.5
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 1.1e-68 264.2 153 86.9
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 1.4e-68 263.8 153 88.9
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 1.4e-68 263.8 153 88.9
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 1.4e-68 263.8 153 88.9
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 1.8e-68 263.5 168 83.9
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 1.8e-68 263.5 151 90.7
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 1.8e-68 263.5 161 87.0
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 1.8e-68 263.5 165 84.8
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 2.4e-68 263.1 152 90.1
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 2.4e-68 263.1 170 82.4
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 2.4e-68 263.1 170 82.4
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 3.1e-68 262.7 152 90.1
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 3.1e-68 262.7 167 82.6
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 4.1e-68 262.3 170 82.4
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 5.3e-68 261.9 167 83.2
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 5.3e-68 261.9 151 90.1
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 7.0e-68 261.5 154 89.0
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 7.0e-68 261.5 152 90.8
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 7.0e-68 261.5 152 89.5
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 7.0e-68 261.5 166 84.3
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 9.1e-68 261.2 154 89.6
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 1.2e-67 260.8 160 85.6
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 1.2e-67 260.8 160 85.6
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 1.2e-67 260.8 170 81.2
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 1.2e-67 260.8 164 84.1
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 1.6e-67 260.4 152 88.8
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 3.5e-67 259.2 167 83.8
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 4.5e-67 258.8 165 81.8
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 5.9e-67 258.5 166 83.1
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 1.0e-66 257.7 167 82.6
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 1.0e-66 257.7 164 82.9
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 1.3e-66 257.3 156 85.9
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 1.7e-66 256.9 166 82.5
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 2.2e-66 256.5 148 89.9
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 5.0e-66 255.4 159 83.6
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 8.5e-66 254.6 149 86.6
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 1.1e-65 254.2 152 84.2
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 2.5e-65 253.1 146 89.7
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 3.2e-65 252.7 164 82.9
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 4.2e-65 252.3 164 81.1
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 7.2e-65 251.5 151 86.1
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 9.4e-65 251.1 147 89.8
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 1.6e-64 250.4 166 80.7
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.6e-64 250.4 166 80.7
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 1.6e-64 250.4 155 83.9
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 1.6e-64 250.4 155 83.9
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 1.6e-64 250.4 166 81.3
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.1e-64 250.0 166 80.1
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.1e-64 250.0 166 80.1
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 2.1e-64 250.0 166 80.7
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 3.6e-64 249.2 153 86.3
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 3.6e-64 249.2 161 81.4
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 3.0e-63 246.1 156 85.3
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 5.2e-63 245.4 153 82.4
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 3.4e-62 242.7 162 79.0
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 4.4e-62 242.3 153 81.7
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 4.4e-62 242.3 153 81.7
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 7.5e-62 241.5 158 84.2
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 2.2e-61 240.0 163 79.1
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 6.3e-61 238.4 149 85.2
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 8.3e-61 238.0 152 85.5
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 4.1e-60 235.7 142 85.9
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 4.1e-60 235.7 165 78.2
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 5.4e-60 235.3 159 81.8
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 3.5e-59 232.6 145 84.1
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 2.5e-57 226.5 131 89.3
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 1.2e-56 224.2 150 79.3
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 2.1e-56 223.4 143 81.1
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 1.4e-55 220.7 164 75.0
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 1.4e-55 220.7 164 75.0
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 2.0e-54 216.9 168 69.0
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 3.7e-53 212.6 137 80.3
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 2.4e-52 209.9 141 80.9
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 5.4e-52 208.8 123 87.0
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 8.6e-50 201.4 172 69.8
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 3.3e-49 199.5 134 82.1
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 3.3e-49 199.5 164 68.9
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 3.6e-48 196.1 134 79.9
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 4.7e-48 195.7 164 67.1
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 3.4e-46 189.5 161 63.4
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 2.9e-45 186.4 165 64.2
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 1.9e-44 183.7 109 84.4
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 3.5e-43 179.5 153 65.4
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 7.8e-43 178.3 125 76.0
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 9.2e-36 154.8 94 81.9
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 1.6e-35 154.1 92 82.6
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 1.1e-33 147.9 110 73.6
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 8.1e-32 141.7 163 54.0
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 8.1e-32 141.7 163 54.0
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 8.1e-32 141.7 163 54.0
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.4e-31 141.0 163 54.6
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 1.0e-26 124.8 139 53.2
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 2.4e-20 103.6 144 49.3
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 7.8e-19 98.6 53 88.7
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 7.6e-14 82.0 58 74.1
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 7.6e-14 82.0 40 100.0
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 9.9e-14 81.6 55 80.0
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 4.9e-13 79.3 46 80.4
CSS0022278 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 2.1e-08 63.9 42 81.0


User provided reference genes

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