Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022367 Camellia sinensis var. sinensis HOM05D006093 ORTHO05D007652 1.0e-187 660.2 400 100.0
vmacro16879 Vaccinium macrocarpon HOM05D006093 ORTHO05D007652 2.6e-148 529.3 359 80.2
Hma1.2p1_0017F.1_g011320 Hydrangea macrophylla HOM05D006093 ORTHO05D007652 1.6e-145 520.0 332 81.3
Lalb_Chr24g0395421 Lupinus albus HOM05D006093 ORTHO05D007652 2.0e-143 513.1 335 78.8
Atru.chr1.2881 Acer truncatum HOM05D006093 ORTHO05D007652 7.5e-143 511.1 302 83.8
Lj5A75T43 Lonicera japonica HOM05D006093 ORTHO05D007652 9.8e-143 510.8 322 80.4
Ciclev10025737m.g Citrus clementina HOM05D006093 ORTHO05D007652 1.7e-142 510.0 334 78.1
COL.COLO4_11898 Corchorus olitorius HOM05D006093 ORTHO05D007652 2.8e-142 509.2 301 83.4
Duzib235G0399 Durio zibethinus HOM05D006093 ORTHO05D007652 3.1e-141 505.8 336 76.5
TPR.G37262 Trifolium pratense HOM05D006093 ORTHO05D007652 7.0e-141 504.6 325 78.2
Gohir.D10G082500 Gossypium hirsutum HOM05D006093 ORTHO05D007652 1.6e-140 503.4 296 83.8
Manes.11G058700 Manihot esculenta HOM05D006093 ORTHO05D007652 2.7e-140 502.7 328 78.0
Potri.003G031100 Populus trichocarpa HOM05D006093 ORTHO05D007652 3.5e-140 502.3 330 77.9
HanXRQChr02g0033451 Helianthus annuus HOM05D006093 ORTHO05D007652 1.3e-139 500.4 294 83.3
Migut.I00747 Erythranthe guttata HOM05D006093 ORTHO05D007652 2.9e-139 499.2 334 77.2
Lj3g0003829 Lotus japonicus HOM05D006093 ORTHO05D007652 3.8e-139 498.8 333 75.7
TAR626G1009 Trochodendron aralioides HOM05D006093 ORTHO05D007652 6.5e-139 498.0 297 82.5
Thecc.06G031100 Theobroma cacao HOM05D006093 ORTHO05D007652 8.5e-139 497.7 297 82.2
MSTRG.11153 Avicennia marina HOM05D006093 ORTHO05D007652 1.6e-137 493.4 306 79.7
Eucgr.F03905 Eucalyptus grandis HOM05D006093 ORTHO05D007652 2.7e-137 492.7 294 81.0
Rhsim12G0190000 Rhododendron simsii HOM05D006093 ORTHO05D007652 4.7e-137 491.9 370 72.7
RcHm_v2.0_Chr2g0134861 Rosa chinensis HOM05D006093 ORTHO05D007652 3.0e-136 489.2 333 74.8
THA.LOC104818014 Tarenaya hassleriana HOM05D006093 ORTHO05D007652 6.8e-136 488.0 300 80.0
CANSAT56G0666 Cannabis sativa HOM05D006093 ORTHO05D007652 8.8e-136 487.6 335 73.1
CiPaw.01G249800 Carya illinoinensis HOM05D006093 ORTHO05D007652 8.8e-136 487.6 334 75.1
PSO170G6797 Papaver somniferum HOM05D006093 ORTHO05D007652 8.8e-136 487.6 325 76.3
Medtr2g104100 Medicago truncatula HOM05D006093 ORTHO05D007652 1.5e-135 486.9 303 79.9
Thhalv10011553m.g Eutrema salsugineum HOM05D006093 ORTHO05D007652 2.0e-135 486.5 333 76.9
BcaC08g43998 Brassica carinata HOM05D006093 ORTHO05D007652 5.7e-135 485.0 297 81.8
MD17G1215000 Malus domestica HOM05D006093 ORTHO05D007652 5.7e-135 485.0 305 79.3
Carub.0001s4146 Capsella rubella HOM05D006093 ORTHO05D007652 9.8e-135 484.2 302 81.5
ECA238G2964 Erigeron canadensis HOM05D005083 ORTHO05D006310 1.3e-134 483.8 328 75.0
Glyma.13G366800 Glycine max HOM05D006093 ORTHO05D007652 1.3e-134 483.8 334 74.3
MBI15_g24195_MAGBIO Magnolia biondii HOM05D006093 ORTHO05D007652 1.3e-134 483.8 296 80.4
FvH4_6g29401 Fragaria vesca HOM05D006093 ORTHO05D007652 2.2e-134 483.0 333 73.3
FAN14G2225 Fragaria x ananassa HOM05D006093 ORTHO05D007652 2.2e-134 483.0 333 73.3
Sp1g39050 Schrenkiella parvula HOM05D006093 ORTHO05D007652 4.9e-134 481.9 334 74.9
arahy.Tifrunner.gnm1.ann1.5T1ZSX Arachis hypogaea HOM05D006093 ORTHO05D007652 6.3e-134 481.5 294 81.3
arahy.Tifrunner.gnm1.ann1.RDN84X Arachis hypogaea HOM05D006093 ORTHO05D007652 6.3e-134 481.5 294 81.3
BolC6t36581H Brassica oleracea HOM05D006093 ORTHO05D007652 6.3e-134 481.5 297 81.1
PGSC0003DMG400014146 Solanum tuberosum HOM05D006093 ORTHO05D007652 6.3e-134 481.5 297 80.5
FAN09G4542 Fragaria x ananassa HOM05D006093 ORTHO05D007652 8.3e-134 481.1 333 73.6
Gorai.011G089400 Gossypium raimondii HOM05D006093 ORTHO05D007652 1.1e-133 480.7 352 71.0
Nitab4.5_0010806g0010 Nicotiana tabacum HOM05D006093 ORTHO05D007652 1.4e-133 480.3 297 79.1
ATR0800G026 Amborella trichopoda HOM05D006093 ORTHO05D007652 1.8e-133 479.9 333 73.3
A05p18970 Brassica napus HOM05D006093 ORTHO05D007652 7.0e-133 478.0 327 75.8
BraA05t20794Z Brassica rapa HOM05D006093 ORTHO05D007652 7.0e-133 478.0 327 75.8
Solyc03g117510.4 Solanum lycopersicum HOM05D006093 ORTHO05D007652 7.0e-133 478.0 297 80.5
VMungo1080G1109 Vigna mungo HOM05D006093 ORTHO05D007652 7.0e-133 478.0 327 74.9
EL10Ac9g21886 Beta vulgaris HOM05D006093 ORTHO05D007652 9.2e-133 477.6 334 74.6
AT1G52500 Arabidopsis thaliana HOM05D006093 ORTHO05D007652 1.2e-132 477.2 302 79.5
Cc04_g04560 Coffea canephora HOM05D006093 ORTHO05D007652 2.0e-132 476.5 285 81.8
Sopen03g036410 Solanum pennellii HOM05D006093 ORTHO05D007652 2.7e-132 476.1 297 80.5
AUR62016319 Chenopodium quinoa HOM05D006093 ORTHO05D007652 2.3e-131 473.0 327 74.6
BcaB02g10988 Brassica carinata HOM05D006093 ORTHO05D007652 2.9e-131 472.6 286 81.5
QL05p032033 Quercus lobata HOM05D006093 ORTHO05D007652 8.6e-131 471.1 344 69.8
Ca_01048_v3 Cicer arietinum L. HOM05D006093 ORTHO05D007652 2.5e-130 469.5 356 67.4
TWI12G0620 Tripterygium wilfordii HOM05D006093 ORTHO05D007652 2.5e-130 469.5 326 73.6
CsaV3_4G001910 Cucumis sativus L. HOM05D006093 ORTHO05D007652 5.6e-130 468.4 326 72.4
AUR62011503 Chenopodium quinoa HOM05D006093 ORTHO05D007652 9.5e-130 467.6 290 79.7
Gohir.A10G068900 Gossypium hirsutum HOM05D006093 ORTHO05D007652 2.8e-129 466.1 302 78.8
Aa31LG10G2500 Aethionema arabicum HOM05D006093 ORTHO05D007652 4.0e-128 462.2 325 73.5
Sed0013008 Sechium edule HOM05D006093 ORTHO05D007652 5.2e-128 461.8 317 72.9
Cpa.g.sc167.9 Carica papaya HOM05D006093 ORTHO05D007652 2.0e-127 459.9 267 83.5
DCAR_025523 Daucus carota HOM05D006093 ORTHO05D007652 8.3e-126 454.5 260 85.8
SalBow2G3638 Salvia bowleyana HOM05D006093 ORTHO05D007652 1.4e-125 453.8 348 68.4
Phvul.005G179300 Phaseolus vulgaris HOM05D006093 ORTHO05D007652 3.2e-125 452.6 337 70.9
FAN05G1370 Fragaria x ananassa HOM05D006093 ORTHO05D007652 5.4e-125 451.8 334 70.4
HPP92_003851 Vanilla planifolia HOM05D006093 ORTHO05D007652 9.2e-125 451.1 338 66.9
CDE05G1298 Ceratophyllum demersum HOM05D006093 ORTHO05D007652 1.6e-124 450.3 323 71.2
Peaxi162Scf00553g00627 Petunia axillaris HOM05D006093 ORTHO05D007652 2.7e-124 449.5 364 66.5
CAN.G407.11 Capsicum annuum HOM05D006093 ORTHO05D007652 3.9e-123 445.7 326 71.8
Manes.04G110800 Manihot esculenta HOM05D006093 ORTHO05D007652 4.3e-122 442.2 301 76.1
unitig_62.g23594 Utricularia gibba HOM05D006093 ORTHO05D007652 6.2e-121 438.3 384 60.4
Sabra03G0017500 Salix brachista HOM05D006093 ORTHO05D007652 2.0e-119 433.3 416 59.6
Nn8g39568 Nelumbo nucifera HOM05D006093 ORTHO05D007652 5.8e-119 431.8 260 83.8
Hund00502 Selenicereus undatus HOM05D006093 ORTHO05D007652 8.3e-118 427.9 258 79.8
ClCG07G012240 Citrullus lanatus HOM05D006093 ORTHO05D007652 1.9e-117 426.8 382 59.2
ECA247G0880 Erigeron canadensis HOM05D006093 ORTHO05D007652 4.1e-117 425.6 336 68.5
GSVIVG01017379001 Vitis vinifera HOM05D006093 ORTHO05D007652 1.6e-116 423.7 304 71.7
Lsat_1_v5_gn_1_34180 Lactuca sativa HOM05D006093 ORTHO05D007652 2.7e-116 422.9 367 62.9
Os08g0304900 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 2.3e-115 419.9 325 65.2
Ah.01g020480 Amaranthus hybridus HOM05D006093 ORTHO05D007652 1.1e-114 417.5 330 68.5
SGA_v2.0_scaffold5G02719 Striga asiatica HOM05D006093 ORTHO05D007652 1.9e-114 416.8 322 67.4
Zm00001eb275260 Zea mays HOM05D006093 ORTHO05D007652 1.9e-114 416.8 337 63.2
Actinidia08791 Actinidia chinensis HOM05D006093 ORTHO05D007652 9.5e-114 414.5 259 84.6
HanXRQChr02g0033461 Helianthus annuus HOM05D006093 ORTHO05D007652 2.1e-113 413.3 292 73.6
HanXRQChr02g0033471 Helianthus annuus HOM05D006093 ORTHO05D007652 3.6e-113 412.5 339 67.3
Os06g0643600 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 6.2e-113 411.8 327 65.1
Dinv30625 Davidia involucrata HOM05D006093 ORTHO05D007652 1.3e-110 404.1 289 75.1
Psat5g303120 Pisum sativum HOM05D006093 ORTHO05D007652 8.3e-110 401.4 390 59.2
Haze_16582 Corylus avellana HOM05D006093 ORTHO05D007652 5.4e-109 398.7 245 81.6
PGR102G2220 Punica granatum HOM05D006093 ORTHO05D007652 4.6e-108 395.6 281 71.9
MELO3C017842.2 Cucumis melo HOM05D006093 ORTHO05D007652 1.0e-107 394.4 339 61.9
Nitab4.5_0003072g0060 Nicotiana tabacum HOM05D006093 ORTHO05D007652 8.1e-105 384.8 332 63.0
CARHR042600 Cardamine hirsuta HOM05D006093 ORTHO05D007652 2.6e-103 379.8 222 84.7
Prupe.3G090700 Prunus persica HOM05D006093 ORTHO05D007652 2.2e-102 376.7 221 84.2
AL1G60740 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 1.9e-101 373.6 222 82.9
Sc10g0008130 Simmondsia chinensis HOM05D006093 ORTHO05D007652 3.0e-99 366.3 216 82.4
SHI11225 Sapria himalayana HOM05D006093 ORTHO05D007652 3.3e-90 336.3 328 55.5
Pp3c23_21520 Physcomitrium patens HOM05D006093 ORTHO05D007652 7.3e-90 335.1 290 57.2
Cfa001944 Carpinus fangiana HOM05D006093 ORTHO05D007652 9.6e-90 334.7 201 82.6
Pp3c8_24280 Physcomitrium patens HOM05D006093 ORTHO05D007652 7.6e-87 325.1 327 51.7
Mapoly0015s0062 Marchantia polymorpha HOM05D006093 ORTHO05D007652 7.4e-82 308.5 293 51.9
SMO367G0330 Selaginella moellendorffii HOM05D006093 ORTHO05D007652 2.4e-80 303.5 251 61.8
Pp3c24_20180 Physcomitrium patens HOM05D006093 ORTHO05D007652 2.5e-74 283.5 329 46.5
PSO017G4202 Papaver somniferum HOM05D006093 ORTHO05D007652 5.3e-72 275.8 204 70.6
Cre10.g428433 Chlamydomonas reinhardtii HOM05D006093 ORTHO05D007652 3.3e-66 256.5 297 47.1
Psat6g066000 Pisum sativum HOM05D006093 ORTHO05D007652 3.1e-64 250.0 182 70.3
CBR_g884 Chara braunii HOM05D006093 ORTHO05D007652 4.2e-61 239.6 250 46.8
MCO15G481 Micromonas commoda HOM05D006093 ORTHO05D007652 1.9e-53 214.2 271 42.8
GSVIVG01026354001 Vitis vinifera HOM05D006093 ORTHO05D007652 1.8e-51 207.6 113 86.7
Cfa001945 Carpinus fangiana HOM05D006093 ORTHO05D007652 2.3e-51 207.2 337 43.6
Eucgr.L03570 Eucalyptus grandis HOM05D006093 ORTHO05D007652 5.1e-51 206.1 114 82.5
Gohir.D10G074901 Gossypium hirsutum HOM05D006093 ORTHO05D007652 7.7e-47 192.2 121 79.3
Cfa026683 Carpinus fangiana HOM05D006093 ORTHO05D007652 1.3e-46 191.4 336 33.0
SEGI_24777 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 1.0e-35 155.2 103 68.9
AL7G45760 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 5.2e-35 152.9 101 77.2
Actinidia08958 Actinidia chinensis HOM05D006093 ORTHO05D007652 4.4e-34 149.8 77 93.5
Dinv01702 Davidia involucrata HOM05D006093 ORTHO05D007652 3.7e-33 146.7 91 76.9
Dinv21460 Davidia involucrata HOM05D006093 ORTHO05D007652 2.7e-31 140.6 77 87.0
Oeu058023.3 Olea europaea HOM05D006093 ORTHO05D005440 1.7e-30 137.9 76 84.2
CARHR042620 Cardamine hirsuta HOM05D006093 ORTHO05D007652 9.8e-26 122.1 109 63.3
AL1G60750 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 7.7e-23 112.5 81 72.8
SEGI_39009 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 1.0e-22 112.1 102 58.8
Medtr3g118550 Medicago truncatula HOM05D006093 ORTHO05D007652 5.7e-18 96.3 132 47.0
Thecc.09G173900 Theobroma cacao HOM05D006093 ORTHO05D007652 7.0e-16 89.4 79 58.2
SGA_v2.0_scaffold72G24067 Striga asiatica HOM05D006093 ORTHO05D007652 1.0e-14 85.5 98 49.0
Sabra14G0094900 Salix brachista HOM05D006093 ORTHO05D007652 5.0e-14 83.2 54 72.2
BolC4t26141H Brassica oleracea HOM05D035675 ORTHO05D007652 1.0e-06 58.9 60 55.0
PRCOL_00006677 Prasinoderma coloniale HOM05D016293 ORTHO05D018978 6.6e-06 56.2 308 29.2


User provided reference genes

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