Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 5.7e-138 494.2 241 100.0
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 5.9e-127 457.6 245 93.5
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 7.0e-120 434.1 244 88.5
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 2.0e-111 406.0 246 83.7
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 3.5e-111 405.2 244 83.2
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 3.8e-110 401.7 242 83.1
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 3.3e-109 398.7 245 80.0
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 9.8e-106 387.1 242 79.8
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 5.9e-103 377.9 245 75.9
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 2.3e-99 365.9 245 73.5
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 7.5e-98 360.9 245 71.0
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 4.1e-96 355.1 243 70.8
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 4.6e-95 351.7 246 70.7
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 7.8e-95 350.9 245 71.4
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 6.6e-94 347.8 244 72.5
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 8.6e-94 347.4 245 70.2
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 2.5e-93 345.9 244 69.7
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 9.5e-93 344.0 236 71.6
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 1.2e-92 343.6 244 69.3
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 1.6e-92 343.2 245 70.2
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 3.6e-92 342.0 245 68.2
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 1.4e-91 340.1 239 70.3
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.4e-91 340.1 244 68.9
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 6.8e-91 337.8 242 65.7
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 6.8e-91 337.8 244 69.3
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 1.5e-90 336.7 238 71.0
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 3.4e-90 335.5 245 67.8
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 1.3e-89 333.6 244 67.6
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 2.2e-89 332.8 238 67.6
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 6.4e-89 331.3 236 69.5
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 8.3e-89 330.9 244 67.6
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 1.1e-88 330.5 244 66.0
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 1.4e-88 330.1 239 67.4
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 3.2e-88 328.9 236 66.9
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 2.1e-87 326.2 244 66.0
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 2.1e-87 326.2 238 66.8
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 6.0e-87 324.7 236 66.5
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 7.8e-87 324.3 236 68.2
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 1.7e-86 323.2 237 67.5
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 2.3e-86 322.8 233 69.1
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 3.9e-86 322.0 245 66.1
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 3.9e-86 322.0 234 68.4
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 6.6e-86 321.2 236 68.6
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 1.9e-85 319.7 240 66.2
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 2.5e-85 319.3 234 67.5
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 5.6e-85 318.2 236 66.1
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 6.2e-84 314.7 236 66.1
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 8.1e-84 314.3 244 64.8
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 8.1e-84 314.3 234 67.1
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 1.1e-83 313.9 237 65.8
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 3.1e-83 312.4 237 66.2
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 3.1e-83 312.4 237 66.2
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 1.5e-82 310.1 244 62.7
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.0e-82 309.7 243 63.8
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.4e-82 308.9 243 63.0
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 1.3e-81 307.0 247 61.9
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 1.7e-81 306.6 241 65.6
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 2.9e-81 305.8 239 63.2
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 2.9e-81 305.8 240 66.7
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 2.9e-81 305.8 245 63.7
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 3.7e-81 305.4 238 65.1
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 3.7e-81 305.4 260 61.9
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 3.7e-81 305.4 236 63.1
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 1.4e-80 303.5 241 65.1
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 1.4e-80 303.5 247 64.0
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 4.1e-80 302.0 258 61.2
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.6e-79 300.1 243 62.6
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 1.6e-79 300.1 250 62.0
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 3.5e-79 298.9 217 68.7
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 4.6e-79 298.5 246 63.0
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 7.8e-79 297.7 242 64.0
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 1.0e-78 297.4 236 63.1
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 3.0e-78 295.8 246 62.6
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 8.6e-78 294.3 246 62.2
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 8.6e-78 294.3 250 61.2
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.5e-77 293.5 246 61.4
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 7.3e-77 291.2 237 60.3
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 9.6e-77 290.8 239 59.8
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 9.6e-77 290.8 246 61.8
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 9.6e-77 290.8 243 60.1
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.1e-76 289.7 238 61.3
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.1e-76 289.7 238 61.3
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 8.1e-76 287.7 242 59.5
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 1.1e-75 287.3 245 60.0
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 2.4e-75 286.2 246 60.6
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 3.1e-75 285.8 242 60.7
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 5.2e-75 285.0 246 60.6
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 5.2e-75 285.0 244 61.5
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.2e-74 283.9 238 59.2
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 1.2e-74 283.9 219 65.3
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 1.5e-74 283.5 243 60.9
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 1.5e-74 283.5 243 60.9
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 2.6e-74 282.7 249 58.2
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 3.4e-74 282.3 236 61.9
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 3.4e-74 282.3 242 61.2
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 9.9e-74 280.8 249 58.6
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 9.9e-74 280.8 249 58.6
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 1.3e-73 280.4 225 65.8
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 4.9e-73 278.5 242 60.7
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 6.4e-73 278.1 238 58.4
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 6.4e-73 278.1 234 59.0
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 1.1e-72 277.3 245 58.4
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 3.2e-72 275.8 207 65.7
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 3.2e-72 275.8 241 58.1
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 3.2e-72 275.8 229 59.4
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 1.2e-71 273.9 243 60.9
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 2.7e-71 272.7 236 60.2
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 6.0e-71 271.6 243 60.1
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 6.0e-71 271.6 246 56.1
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.0e-70 269.2 204 64.2
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 3.0e-70 269.2 245 58.0
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 6.6e-70 268.1 239 57.7
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 8.7e-70 267.7 243 57.6
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.1e-69 267.3 204 65.2
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 2.5e-69 266.2 239 57.7
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 9.6e-69 264.2 240 56.7
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 1.3e-68 263.8 237 57.8
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 1.6e-68 263.5 239 56.1
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 2.1e-68 263.1 239 56.9
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.8e-68 262.7 217 59.9
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 3.6e-68 262.3 241 57.7
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 4.8e-68 261.9 239 55.6
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 4.8e-68 261.9 237 57.0
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 8.1e-68 261.2 239 56.9
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 1.4e-67 260.4 239 56.9
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 1.8e-67 260.0 237 57.0
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 1.8e-67 260.0 237 57.0
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 2.4e-67 259.6 239 56.1
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 9.0e-67 257.7 245 57.6
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 1.5e-66 256.9 244 54.1
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 2.6e-66 256.1 239 56.1
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 2.6e-66 256.1 239 56.1
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 1.7e-65 253.4 236 55.5
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 4.9e-65 251.9 238 52.9
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 6.4e-65 251.5 237 55.3
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 1.1e-64 250.8 239 54.8
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 1.4e-64 250.4 239 53.6
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 1.6e-63 246.9 236 56.4
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 2.7e-63 246.1 241 54.8
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 1.5e-61 240.4 236 53.0
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 2.5e-61 239.6 225 55.1
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 3.3e-61 239.2 239 54.0
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 2.1e-60 236.5 175 66.3
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 4.8e-60 235.3 259 50.6
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 1.8e-59 233.4 247 51.0
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 1.2e-58 230.7 235 51.9
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 3.4e-58 229.2 234 49.6
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 9.9e-58 227.6 211 55.0
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 3.2e-56 222.6 224 53.1
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 1.2e-55 220.7 185 57.8
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 6.0e-55 218.4 224 50.9
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.3e-54 216.5 239 51.5
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 8.7e-54 214.5 164 65.2
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.1e-52 209.9 158 65.2
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 2.6e-50 203.0 158 65.2
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 4.5e-50 202.2 186 60.2
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 1.3e-49 200.7 243 46.9
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 1.2e-47 194.1 205 51.2
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 6.7e-46 188.3 164 56.1
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 3.3e-45 186.0 206 51.5
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 8.2e-44 181.4 259 39.4
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 5.0e-41 172.2 129 65.1
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 1.1e-40 171.0 263 38.0
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.1e-39 166.8 188 50.5
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 2.6e-34 149.8 137 56.2
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 8.8e-30 134.8 108 60.2
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 8.8e-30 134.8 101 65.3
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 2.6e-29 133.3 116 59.5
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 4.4e-29 132.5 152 50.0
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.2e-26 124.4 94 68.1
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 2.0e-26 123.6 120 55.0
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 4.5e-26 122.5 119 55.5
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 3.1e-19 99.8 166 35.5
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 3.1e-19 99.8 73 69.9
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 5.3e-19 99.0 90 56.7
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 3.8e-17 92.8 191 30.4
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 3.8e-17 92.8 88 50.0
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 6.5e-17 92.0 97 48.5
CARHR273910 Cardamine hirsuta HOM05D003786 ORTHO05D004375 1.8e-14 84.0 81 54.3
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 1.2e-13 81.3 132 41.7
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 4.7e-07 59.3 168 26.8
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 3.0e-06 56.6 54 57.4


User provided reference genes

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