Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016864 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 2.0e-89 332.4 166 100.0
CSS0001186 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 4.9e-64 248.1 150 86.7
Actinidia16585 Actinidia chinensis HOM05D005037 ORTHO05D006274 2.4e-58 229.2 150 80.0
vmacro08710 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 4.0e-58 228.4 155 77.4
Lj4A690T47 Lonicera japonica HOM05D005037 ORTHO05D006274 5.2e-58 228.0 159 75.5
Thecc.08G141200 Theobroma cacao HOM05D005037 ORTHO05D006274 5.2e-58 228.0 150 78.7
Rhsim03G0093500 Rhododendron simsii HOM05D005037 ORTHO05D006274 8.9e-58 227.3 155 76.8
TAR381G0890 Trochodendron aralioides HOM05D005037 ORTHO05D006274 2.6e-57 225.7 159 74.2
Duzib116G0940 Durio zibethinus HOM05D005037 ORTHO05D006274 9.9e-57 223.8 150 76.7
Oeu002392.1 Olea europaea HOM05D005037 ORTHO05D006274 3.8e-56 221.9 159 74.2
HanXRQChr04g0109491 Helianthus annuus HOM05D005037 ORTHO05D006274 4.9e-56 221.5 159 73.0
BolC5t32377H Brassica oleracea HOM05D005037 ORTHO05D006274 6.4e-56 221.1 159 73.0
TWI32G0322 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 8.4e-56 220.7 159 73.0
MSTRG.1382 Avicennia marina HOM05D005037 ORTHO05D006274 1.1e-55 220.3 161 70.8
Aa31LG6G9500 Aethionema arabicum HOM05D005037 ORTHO05D006274 1.9e-55 219.5 150 76.0
CiPaw.16G018700 Carya illinoinensis HOM05D005037 ORTHO05D006274 1.9e-55 219.5 150 76.0
Sp1g33080 Schrenkiella parvula HOM05D005037 ORTHO05D006274 1.9e-55 219.5 150 75.3
Duzib041G0013 Durio zibethinus HOM05D005037 ORTHO05D006274 3.2e-55 218.8 150 75.3
Gohir.D02G074100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 3.2e-55 218.8 150 76.0
Nitab4.5_0002972g0050 Nicotiana tabacum HOM05D005037 ORTHO05D006274 3.2e-55 218.8 159 71.7
Haze_17689 Corylus avellana HOM05D005037 ORTHO05D006274 4.2e-55 218.4 159 73.0
Gorai.005G083500 Gossypium raimondii HOM05D005037 ORTHO05D006274 5.4e-55 218.0 151 75.5
BcaC05g27657 Brassica carinata HOM05D005037 ORTHO05D006274 7.1e-55 217.6 159 71.7
Nn5g28553 Nelumbo nucifera HOM05D005037 ORTHO05D006274 7.1e-55 217.6 159 73.6
C05p36450 Brassica napus HOM05D005037 ORTHO05D006274 9.3e-55 217.2 159 71.7
Thhalv10011594m.g Eutrema salsugineum HOM05D005037 ORTHO05D006274 9.3e-55 217.2 150 75.3
A10p07730 Brassica napus HOM05D005037 ORTHO05D006274 1.2e-54 216.9 150 74.0
BraSC36t46032Z Brassica rapa HOM05D005037 ORTHO05D006274 1.2e-54 216.9 150 74.0
Cc10_g13130 Coffea canephora HOM05D005037 ORTHO05D006274 1.2e-54 216.9 159 71.1
Gohir.A02G068100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 1.2e-54 216.9 150 75.3
RcHm_v2.0_Chr6g0277561 Rosa chinensis HOM05D005037 ORTHO05D006274 1.2e-54 216.9 159 73.0
TWI60G0144 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 1.2e-54 216.9 159 71.7
AL1G51980 Arabidopsis lyrata HOM05D005037 ORTHO05D006274 1.6e-54 216.5 164 68.9
A05p21790 Brassica napus HOM05D005037 ORTHO05D006274 1.6e-54 216.5 159 71.1
BraA05t21100Z Brassica rapa HOM05D005037 ORTHO05D006274 1.6e-54 216.5 159 71.1
Prupe.8G016400 Prunus persica HOM05D005037 ORTHO05D006274 1.6e-54 216.5 159 71.7
Solyc04g064570.3 Solanum lycopersicum HOM05D005037 ORTHO05D006274 1.6e-54 216.5 159 71.1
Sopen04g026520 Solanum pennellii HOM05D005037 ORTHO05D006274 1.6e-54 216.5 159 71.1
PGSC0003DMG400024852 Solanum tuberosum HOM05D005037 ORTHO05D006274 1.6e-54 216.5 159 71.1
Sc02g0004500 Simmondsia chinensis HOM05D005037 ORTHO05D006274 2.1e-54 216.1 150 76.0
Migut.C01102 Erythranthe guttata HOM05D005037 ORTHO05D006274 2.7e-54 215.7 159 69.8
Atru.chr13.1666 Acer truncatum HOM05D005037 ORTHO05D006274 4.6e-54 214.9 159 72.3
Carub.0001s3480 Capsella rubella HOM05D005037 ORTHO05D006274 4.6e-54 214.9 164 67.7
Nitab4.5_0000174g0240 Nicotiana tabacum HOM05D005037 ORTHO05D006274 4.6e-54 214.9 159 70.4
AT1G43860 Arabidopsis thaliana HOM05D005037 ORTHO05D006274 6.0e-54 214.5 164 67.7
CAN.G657.3 Capsicum annuum HOM05D005037 ORTHO05D006274 7.8e-54 214.2 159 71.1
Peaxi162Scf00066g01930 Petunia axillaris HOM05D005037 ORTHO05D006274 7.8e-54 214.2 159 71.1
Ciclev10001639m.g Citrus clementina HOM05D005037 ORTHO05D006274 1.0e-53 213.8 159 70.4
CARHR035400 Cardamine hirsuta HOM05D005037 ORTHO05D006274 1.3e-53 213.4 150 72.7
Potri.002G073200 Populus trichocarpa HOM05D005037 ORTHO05D006274 1.3e-53 213.4 159 71.7
FvH4_2g15010 Fragaria vesca HOM05D005037 ORTHO05D006274 1.7e-53 213.0 159 71.1
Lsat_1_v5_gn_1_9740 Lactuca sativa HOM05D005037 ORTHO05D006274 1.7e-53 213.0 159 71.7
MD05G1011400 Malus domestica HOM05D005037 ORTHO05D006274 1.7e-53 213.0 159 71.1
BcaB02g11416 Brassica carinata HOM05D005037 ORTHO05D006274 2.3e-53 212.6 159 71.1
Cpa.g.sc13.102 Carica papaya HOM05D005037 ORTHO05D006274 2.3e-53 212.6 159 71.1
SalBow7G3864 Salvia bowleyana HOM05D005037 ORTHO05D006274 2.3e-53 212.6 159 69.8
unitig_747.g21501 Utricularia gibba HOM05D005037 ORTHO05D006274 2.3e-53 212.6 150 75.3
DCAR_015244 Daucus carota HOM05D005037 ORTHO05D006274 3.0e-53 212.2 167 69.5
Hund17388 Selenicereus undatus HOM05D005037 ORTHO05D006274 3.0e-53 212.2 150 73.3
THA.LOC104798858 Tarenaya hassleriana HOM05D005037 ORTHO05D006274 3.0e-53 212.2 148 75.7
GSVIVG01010010001 Vitis vinifera HOM05D005037 ORTHO05D006274 3.0e-53 212.2 160 73.8
ECA233G3664 Erigeron canadensis HOM05D005037 ORTHO05D006274 3.9e-53 211.8 159 71.7
BcaB07g33972 Brassica carinata HOM05D005037 ORTHO05D006274 5.1e-53 211.5 150 73.3
QL09p029039 Quercus lobata HOM05D005037 ORTHO05D006274 6.6e-53 211.1 159 69.8
Manes.02G173400 Manihot esculenta HOM05D005037 ORTHO05D006274 8.7e-53 210.7 150 72.7
DCAR_019815 Daucus carota HOM05D005037 ORTHO05D006274 1.1e-52 210.3 167 68.3
Potri.005G186700 Populus trichocarpa HOM05D005037 ORTHO05D006274 5.6e-52 208.0 159 71.1
FAN24G2486 Fragaria x ananassa HOM05D005037 ORTHO05D006274 7.3e-52 207.6 162 69.8
Sabra05G0142600 Salix brachista HOM05D005037 ORTHO05D006274 7.3e-52 207.6 159 70.4
Eucgr.G02653 Eucalyptus grandis HOM05D005037 ORTHO05D006274 9.6e-52 207.2 159 69.2
Aqoxy6G00356 Aquilegia oxysepala HOM05D005037 ORTHO05D006274 1.6e-51 206.5 159 69.8
PSO541G3185 Papaver somniferum HOM05D005037 ORTHO05D006274 1.6e-51 206.5 159 69.2
PSO675G6067 Papaver somniferum HOM05D005037 ORTHO05D006274 1.6e-51 206.5 159 69.2
PGR142G4097 Punica granatum HOM05D005037 ORTHO05D006274 3.6e-51 205.3 159 68.6
ECA234G0804 Erigeron canadensis HOM05D005037 ORTHO05D006274 8.1e-51 204.1 142 75.4
ATR1136G011 Amborella trichopoda HOM05D005037 ORTHO05D006274 1.4e-50 203.4 159 67.3
PSO421G0325 Papaver somniferum HOM05D005037 ORTHO05D006274 1.8e-50 203.0 159 66.7
PSO673G0037 Papaver somniferum HOM05D005037 ORTHO05D006274 2.4e-50 202.6 159 66.0
EL10Ac4g08872 Beta vulgaris HOM05D005037 ORTHO05D006274 3.1e-50 202.2 159 67.3
CANSAT54G1160 Cannabis sativa HOM05D005037 ORTHO05D006274 5.3e-50 201.4 160 66.9
FAN27G1276 Fragaria x ananassa HOM05D005037 ORTHO05D006274 5.3e-50 201.4 162 69.1
PSO673G0007 Papaver somniferum HOM05D005037 ORTHO05D006274 5.3e-50 201.4 159 66.0
EL10Ac1g01450 Beta vulgaris HOM05D005037 ORTHO05D006274 9.0e-50 200.7 159 66.7
CSS0023189 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 9.0e-50 200.7 142 75.4
AUR62033983 Chenopodium quinoa HOM05D005037 ORTHO05D006274 9.0e-50 200.7 150 70.0
Oeu001556.2 Olea europaea HOM05D005037 ORTHO05D006274 9.0e-50 200.7 131 79.4
SGA_v2.0_scaffold25G11149 Striga asiatica HOM05D005037 ORTHO05D006274 9.0e-50 200.7 161 67.7
CDE02G2089 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 1.2e-49 200.3 159 66.7
AUR62027497 Chenopodium quinoa HOM05D005037 ORTHO05D006274 2.6e-49 199.1 150 70.0
Ah.10g032080 Amaranthus hybridus HOM05D005037 ORTHO05D006274 5.8e-49 198.0 145 70.3
arahy.Tifrunner.gnm1.ann1.E7XDIB Arachis hypogaea HOM05D005037 ORTHO05D006274 7.6e-49 197.6 159 63.5
Lj1g0018953 Lotus japonicus HOM05D005037 ORTHO05D006274 9.9e-49 197.2 159 64.2
VMungo0540G1405 Vigna mungo HOM05D005037 ORTHO05D006274 1.3e-48 196.8 159 64.2
CDE08G0468 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 1.7e-48 196.4 159 64.8
Sed0001170 Sechium edule HOM05D005037 ORTHO05D006274 1.7e-48 196.4 160 65.6
MELO3C010584.2 Cucumis melo HOM05D005037 ORTHO05D006274 2.2e-48 196.1 160 66.9
CsaV3_6G035600 Cucumis sativus L. HOM05D005037 ORTHO05D006274 2.2e-48 196.1 160 66.2
Os08g0107500 Oryza sativa ssp. japonica HOM05D005037 ORTHO05D006274 2.2e-48 196.1 150 65.3
Lalb_Chr02g0149921 Lupinus albus HOM05D005037 ORTHO05D006274 3.8e-48 195.3 159 65.4
arahy.Tifrunner.gnm1.ann1.HCD3KF Arachis hypogaea HOM05D005037 ORTHO05D006274 4.9e-48 194.9 159 62.9
Phvul.006G102500 Phaseolus vulgaris HOM05D005037 ORTHO05D006274 4.9e-48 194.9 159 64.2
arahy.Tifrunner.gnm1.ann1.RY8QGI Arachis hypogaea HOM05D005037 ORTHO05D006274 8.4e-48 194.1 159 62.9
Lj4g0018852 Lotus japonicus HOM05D005037 ORTHO05D006274 1.1e-47 193.7 159 63.5
SHI09275 Sapria himalayana HOM05D005037 ORTHO05D006274 1.1e-47 193.7 150 70.7
SEGI_36163 Sequoiadendron giganteum HOM05D005037 ORTHO05D006274 1.9e-47 193.0 159 64.8
Glyma.14G119400 Glycine max HOM05D005037 ORTHO05D006274 9.3e-47 190.7 159 62.3
Lalb_Chr21g0311851 Lupinus albus HOM05D005037 ORTHO05D006274 1.2e-46 190.3 159 64.8
HPP92_020501 Vanilla planifolia HOM05D005037 ORTHO05D006274 1.2e-46 190.3 161 64.6
ClCG08G002740 Citrullus lanatus HOM05D005037 ORTHO05D006274 2.7e-46 189.1 160 63.1
HPP92_020498 Vanilla planifolia HOM05D005037 ORTHO05D006274 6.0e-46 188.0 161 64.6
Psat1g039480 Pisum sativum HOM05D005037 ORTHO05D006274 1.0e-45 187.2 159 61.0
Ca_30116_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 1.3e-45 186.8 159 61.0
Medtr6g085170 Medicago truncatula HOM05D005037 ORTHO05D006274 1.7e-45 186.4 159 61.0
Zm00001eb260230 Zea mays HOM05D005037 ORTHO05D006274 2.3e-45 186.0 150 62.7
TPR.G31447 Trifolium pratense HOM05D005037 ORTHO05D006274 5.1e-45 184.9 159 60.4
Ca_25512_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 6.6e-45 184.5 158 60.8
CSS0012113 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 2.5e-44 182.6 148 69.6
Glyma.11G142700 Glycine max HOM05D005037 ORTHO05D006274 2.5e-44 182.6 158 61.4
FAN20G2613 Fragaria x ananassa HOM05D005037 ORTHO05D006274 7.3e-44 181.0 131 74.8
Cfa018383 Carpinus fangiana HOM05D005037 ORTHO05D006274 2.1e-43 179.5 154 64.9
vmacro21120 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 3.6e-43 178.7 130 73.1
CSS0029081 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 5.3e-42 174.9 147 68.0
Pp3c4_180 Physcomitrium patens HOM05D005037 ORTHO05D006274 3.8e-40 168.7 148 58.1
SMO348G0060 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 1.9e-36 156.4 148 57.4
FAN15G0656 Fragaria x ananassa HOM05D005037 ORTHO05D006274 1.3e-35 153.7 86 86.0
PSO017G3306 Papaver somniferum HOM05D005037 ORTHO05D006274 1.6e-35 153.3 158 55.7
AagrBONN_evm.TU.Sc2ySwM_117.3544 Anthoceros agrestis HOM05D005037 ORTHO05D006274 1.5e-33 146.7 143 54.5
SMO272G0010 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 5.8e-33 144.8 105 69.5
PSO729G0215 Papaver somniferum HOM05D005037 ORTHO05D006274 2.2e-32 142.9 162 51.9
C06p00420 Brassica napus HOM05D005037 ORTHO05D006274 4.2e-31 138.7 130 59.2
C06p00390 Brassica napus HOM05D005037 ORTHO05D006274 9.3e-31 137.5 130 58.5
Dinv41137 Davidia involucrata HOM05D005037 ORTHO05D006274 7.6e-25 117.9 151 49.7
Cre01.g017500 Chlamydomonas reinhardtii HOM05D005037 ORTHO05D006274 2.9e-24 115.9 149 41.6
CBR_g48721 Chara braunii HOM05D005037 ORTHO05D006274 7.1e-23 111.3 144 42.4
RcHm_v2.0_Chr2g0145391 Rosa chinensis HOM05D005037 ORTHO05D006274 6.1e-22 108.2 61 88.5
PRCOL_00006527 Prasinoderma coloniale HOM05D005037 ORTHO05D006274 2.5e-20 102.8 117 43.6
MCO07G375 Micromonas commoda HOM05D005037 ORTHO05D006274 6.9e-18 94.7 117 42.7
COL.COLO4_33811 Corchorus olitorius HOM05D005037 ORTHO05D006274 2.6e-17 92.8 142 42.3
MD05G1011500 Malus domestica HOM05D005037 ORTHO05D006274 4.3e-12 75.5 62 64.5
PSO729G0072 Papaver somniferum HOM05D005037 ORTHO05D006274 1.7e-08 63.5 54 57.4
Actinidia15170 Actinidia chinensis HOM05D005037 ORTHO05D006274 7.2e-07 58.2 41 65.9


User provided reference genes

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