Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1692.2 843 100.0
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1676.0 863 97.5
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1492.6 882 87.2
Actinidia35417 Actinidia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1431.8 864 84.1
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 0.0e+00 1413.3 860 80.9
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 0.0e+00 1394.8 864 80.8
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 0.0e+00 1387.5 926 76.6
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 0.0e+00 1377.5 864 80.7
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 0.0e+00 1347.0 1006 70.4
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 0.0e+00 1344.7 861 76.5
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 0.0e+00 1342.4 861 76.5
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 0.0e+00 1341.6 862 75.9
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 0.0e+00 1340.9 871 77.0
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 0.0e+00 1337.8 862 76.3
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 0.0e+00 1332.0 864 76.9
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1330.9 860 77.2
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 0.0e+00 1328.2 862 76.8
Atru.chr10.100 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1326.6 860 76.7
Atru.chr10.118 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1326.6 860 76.7
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 0.0e+00 1323.5 865 77.1
Manes.06G161000 Manihot esculenta HOM05D005600 ORTHO05D006682 0.0e+00 1323.1 868 76.3
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 0.0e+00 1318.5 864 76.4
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 0.0e+00 1304.7 865 75.4
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 0.0e+00 1304.3 868 75.2
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 0.0e+00 1295.0 867 75.2
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1294.6 864 74.1
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 0.0e+00 1293.1 864 74.3
Cpa.g.sc84.9 Carica papaya HOM05D005600 ORTHO05D006682 0.0e+00 1292.7 865 75.0
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 0.0e+00 1292.3 858 75.4
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1292.3 867 75.1
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 0.0e+00 1290.0 865 74.8
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1288.9 863 74.2
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1287.3 867 75.0
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 0.0e+00 1286.6 866 74.4
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 0.0e+00 1283.1 853 73.6
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 0.0e+00 1281.2 884 73.4
DCAR_009654 Daucus carota HOM05D005600 ORTHO05D006682 0.0e+00 1277.7 874 73.8
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1276.5 861 73.9
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1273.8 883 72.8
Nn3g21398 Nelumbo nucifera HOM05D005600 ORTHO05D006682 0.0e+00 1271.5 847 74.5
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1271.1 861 73.6
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1268.4 898 71.4
TWI39G0768 Tripterygium wilfordii HOM05D005600 ORTHO05D006682 0.0e+00 1268.1 860 74.4
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 0.0e+00 1266.9 858 74.0
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1264.2 864 72.9
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1263.8 863 72.5
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 0.0e+00 1263.1 865 72.1
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 0.0e+00 1260.4 863 72.8
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1259.2 864 72.9
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 0.0e+00 1257.3 871 73.2
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 0.0e+00 1251.1 854 72.8
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 0.0e+00 1248.4 859 71.0
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 0.0e+00 1246.9 859 72.6
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 0.0e+00 1243.8 865 71.2
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 0.0e+00 1240.3 863 71.5
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1239.6 859 72.2
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1238.4 864 71.4
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 0.0e+00 1234.6 827 73.4
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 0.0e+00 1232.6 862 71.1
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 0.0e+00 1230.7 862 71.1
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 0.0e+00 1229.2 859 70.3
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1228.4 817 74.2
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 0.0e+00 1222.2 918 68.0
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 0.0e+00 1218.4 862 70.6
Lsat_1_v5_gn_7_110720 Lactuca sativa HOM05D005600 ORTHO05D006682 0.0e+00 1217.6 864 70.0
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1217.2 860 69.4
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1215.7 860 69.3
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 0.0e+00 1212.6 861 69.8
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1209.1 863 68.8
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 0.0e+00 1207.2 868 67.7
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1206.8 863 70.6
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1203.0 863 70.5
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 0.0e+00 1198.0 863 69.5
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 0.0e+00 1198.0 949 65.5
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1189.5 860 68.5
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 0.0e+00 1184.1 860 67.9
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 0.0e+00 1179.1 860 70.0
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1177.9 856 68.1
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1177.9 860 67.8
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 0.0e+00 1176.8 860 67.9
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 0.0e+00 1176.4 860 67.7
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 0.0e+00 1176.0 860 67.8
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1174.8 860 67.7
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 0.0e+00 1169.5 863 67.7
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 0.0e+00 1169.1 860 67.3
Hma1.2p1_0151F.1_g067180 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 0.0e+00 1160.2 692 82.2
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 0.0e+00 1154.0 855 66.5
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 0.0e+00 1145.2 909 64.5
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 0.0e+00 1139.4 867 66.0
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 0.0e+00 1138.3 860 65.9
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1117.4 784 71.6
Sabra09G0035700 Salix brachista HOM05D005600 ORTHO05D006682 0.0e+00 1112.8 948 63.4
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 0.0e+00 1090.5 887 64.5
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 0.0e+00 1082.4 868 61.8
COL.COLO4_36487 Corchorus olitorius HOM05D005600 ORTHO05D006682 0.0e+00 1076.6 751 74.0
Ca_08130_v3 Cicer arietinum L. HOM05D005600 ORTHO05D006682 2.0e-302 1042.3 790 67.8
MD11G1186900 Malus domestica HOM05D005600 ORTHO05D006682 1.2e-288 996.5 645 77.2
ClCG03G012970 Citrullus lanatus HOM05D005600 ORTHO05D006682 1.0e-266 923.7 628 73.6
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 5.2e-263 911.4 877 52.0
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 7.5e-262 907.5 872 52.1
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 1.1e-255 887.1 873 51.5
Lj2A14G43 Lonicera japonica HOM05D005600 ORTHO05D006682 2.0e-230 803.1 580 72.2
SMO236G0107 Selaginella moellendorffii HOM05D005600 ORTHO05D006682 2.4e-223 779.6 869 45.1
HPP92_006936 Vanilla planifolia HOM05D005600 ORTHO05D006682 2.5e-220 769.6 557 69.7
CDE01G0031 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 1.8e-218 763.5 877 49.1
Eucgr.B03713 Eucalyptus grandis HOM05D005600 ORTHO05D006682 1.1e-212 744.2 494 76.1
Nitab4.5_0008957g0040 Nicotiana tabacum HOM05D005600 ORTHO05D006682 2.3e-210 736.5 484 76.9
CBR_g4015 Chara braunii HOM05D005600 ORTHO05D006682 2.0e-198 696.8 917 42.3
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 1.5e-177 627.5 840 44.4
VMungo1383G0719 Vigna mungo HOM05D005600 ORTHO05D006682 3.4e-177 626.3 444 71.6
Zm00001eb016670 Zea mays HOM05D005600 ORTHO05D006682 3.5e-174 616.3 501 61.3
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 1.3e-165 587.8 381 74.0
SHI27472 Sapria himalayana HOM05D005600 ORTHO05D006682 4.0e-162 576.2 481 59.0
BcaC04g23081 Brassica carinata HOM05D005600 ORTHO05D006682 1.7e-136 491.1 626 46.3
SEGI_34765 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.1e-135 488.4 378 64.8
Eucgr.B03714 Eucalyptus grandis HOM05D005600 ORTHO05D006682 4.2e-135 486.5 327 73.4
BolC9t54127H Brassica oleracea HOM05D005600 ORTHO05D006682 1.1e-87 328.9 388 50.8
CDE10G0769 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 4.1e-82 310.5 162 88.9
ClCG03G012990 Citrullus lanatus HOM05D005600 ORTHO05D006682 7.4e-76 289.7 215 66.0
PRCOL_00004432 Prasinoderma coloniale HOM05D005600 ORTHO05D006682 1.6e-70 271.9 683 29.1
MCO11G503 Micromonas commoda HOM05D005600 ORTHO05D006682 2.9e-64 251.1 682 28.2
Lj2A14T50 Lonicera japonica HOM05D005600 ORTHO05D006682 6.1e-54 216.9 156 67.9
SEGI_17739 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.1e-34 152.9 125 59.2
Cre12.g524100 Chlamydomonas reinhardtii HOM05D005600 ORTHO05D006682 1.6e-33 149.1 513 26.9
SEGI_12823 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 4.3e-31 141.0 97 63.9
Cfa024653 Carpinus fangiana HOM05D005600 ORTHO05D006682 7.3e-31 140.2 648 20.5
MBI19_g44409_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 5.4e-26 124.0 116 55.2
Atru.chr3.1844 Acer truncatum HOM05D005600 ORTHO05D006682 6.2e-22 110.5 95 58.9
A09p10400 Brassica napus HOM05D005600 ORTHO05D006682 2.0e-20 105.5 88 56.8
VMungo1383G3426 Vigna mungo HOM05D000002 ORTHO05D000001 3.8e-19 101.3 127 40.2
SEGI_14354 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.4e-18 99.4 132 39.4
VMungo1383G0187 Vigna mungo HOM05D005600 ORTHO05D006682 3.5e-17 94.7 42 97.6
Sabra09G0035600 Salix brachista HOM05D005600 ORTHO05D006682 6.0e-17 94.0 120 42.5
MBI19_g44872_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 1.7e-08 65.9 84 45.2
QL10p024418 Quercus lobata HOM05D005600 ORTHO05D006682 1.5e-07 62.8 44 65.9
Hund17892 Selenicereus undatus HOM05D026955 ORTHO05D006682 8.1e-06 57.0 28 89.3


User provided reference genes

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