Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1718.4 857 100.0
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1496.9 896 86.5
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1491.5 882 87.2
Actinidia35417 Actinidia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1293.1 894 76.2
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 0.0e+00 1260.7 890 72.6
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 0.0e+00 1241.9 956 68.4
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 0.0e+00 1232.6 894 71.9
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 0.0e+00 1229.2 894 72.5
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 0.0e+00 1203.7 893 68.9
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 0.0e+00 1203.7 882 69.5
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 0.0e+00 1201.4 882 69.5
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 0.0e+00 1200.3 1036 63.1
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 0.0e+00 1198.3 892 68.0
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 0.0e+00 1193.3 901 69.3
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1176.0 890 68.9
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 0.0e+00 1173.3 894 68.5
Atru.chr10.100 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1171.8 890 68.4
Atru.chr10.118 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1171.8 890 68.4
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 0.0e+00 1171.4 897 68.1
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 0.0e+00 1171.4 895 68.9
Manes.06G161000 Manihot esculenta HOM05D005600 ORTHO05D006682 0.0e+00 1169.8 898 67.8
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 0.0e+00 1159.8 887 68.4
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 0.0e+00 1156.7 884 68.3
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 0.0e+00 1146.7 898 67.1
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1144.8 894 65.9
Cpa.g.sc84.9 Carica papaya HOM05D005600 ORTHO05D006682 0.0e+00 1143.3 900 67.1
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1141.3 883 66.5
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 0.0e+00 1140.9 897 67.0
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1138.3 897 66.9
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1137.5 897 66.9
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 0.0e+00 1137.1 894 65.7
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 0.0e+00 1136.3 895 66.3
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 0.0e+00 1132.1 888 66.8
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 0.0e+00 1129.0 897 66.0
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1128.6 891 66.1
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 0.0e+00 1128.2 887 66.6
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 0.0e+00 1126.3 914 65.5
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 0.0e+00 1124.0 884 65.3
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1123.2 891 65.9
Nn3g21398 Nelumbo nucifera HOM05D005600 ORTHO05D006682 0.0e+00 1122.5 881 66.3
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 0.0e+00 1122.5 892 66.5
DCAR_009654 Daucus carota HOM05D005600 ORTHO05D006682 0.0e+00 1121.3 905 65.7
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 0.0e+00 1120.5 886 65.3
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1120.1 920 63.8
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1118.2 913 64.5
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 0.0e+00 1114.0 893 64.7
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1113.2 881 64.9
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1111.3 892 64.1
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 0.0e+00 1110.5 897 63.7
TWI39G0768 Tripterygium wilfordii HOM05D005600 ORTHO05D006682 0.0e+00 1109.4 880 66.7
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 0.0e+00 1107.8 880 65.1
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 0.0e+00 1106.3 888 65.2
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1104.0 894 64.4
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 0.0e+00 1102.0 893 63.9
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1099.7 881 64.9
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 0.0e+00 1093.2 892 63.8
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 0.0e+00 1092.0 880 63.5
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 0.0e+00 1090.9 892 63.2
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1088.2 865 64.7
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 0.0e+00 1087.0 862 64.8
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 0.0e+00 1085.9 892 63.0
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1085.1 892 62.8
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 0.0e+00 1084.7 892 63.7
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 0.0e+00 1080.1 931 62.1
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 0.0e+00 1078.9 882 63.4
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 5.9e-312 1074.7 890 62.2
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 1.2e-311 1073.2 890 62.1
Lsat_1_v5_gn_7_110720 Lactuca sativa HOM05D005600 ORTHO05D006682 1.8e-311 1072.4 889 63.1
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 2.0e-310 1068.9 897 60.9
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 7.6e-310 1067.0 882 62.2
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 1.6e-307 1059.3 883 62.6
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 6.0e-307 1057.4 884 61.9
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 1.1e-305 1053.1 893 62.5
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 1.5e-305 1052.7 884 61.5
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 1.6e-304 1049.3 893 62.4
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 1.1e-303 1046.6 880 61.7
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 1.4e-303 1046.2 887 61.2
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 1.8e-303 1045.8 884 61.2
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 3.1e-303 1045.0 978 58.4
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 5.2e-303 1044.3 884 61.1
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 1.5e-302 1042.7 884 61.1
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 4.4e-302 1041.2 882 63.0
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 2.2e-301 1038.9 887 61.2
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 3.8e-301 1038.1 896 60.5
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 8.4e-301 1036.9 890 60.4
Hma1.2p1_0151F.1_g067180 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 1.4e-295 1019.6 712 73.3
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 5.8e-294 1014.2 942 57.7
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 2.9e-293 1011.9 895 59.1
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 2.4e-292 1008.8 899 60.4
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 5.4e-292 1007.7 882 59.4
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 6.0e-291 1004.2 890 59.6
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 7.1e-284 980.7 814 63.1
Sabra09G0035700 Salix brachista HOM05D005600 ORTHO05D006682 6.9e-279 964.1 973 57.1
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 1.1e-273 946.8 913 54.4
COL.COLO4_36487 Corchorus olitorius HOM05D005600 ORTHO05D006682 2.6e-270 935.6 771 65.8
Ca_08130_v3 Cicer arietinum L. HOM05D005600 ORTHO05D006682 1.1e-268 930.2 791 62.3
MD11G1186900 Malus domestica HOM05D005600 ORTHO05D006682 1.1e-247 860.5 665 68.1
ClCG03G012970 Citrullus lanatus HOM05D005600 ORTHO05D006682 8.8e-234 814.3 628 67.7
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 2.3e-229 799.7 907 47.2
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 1.6e-227 793.5 902 46.7
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 2.0e-222 776.5 895 46.9
Lj2A14G43 Lonicera japonica HOM05D005600 ORTHO05D006682 1.7e-197 693.7 581 65.4
SMO236G0107 Selaginella moellendorffii HOM05D005600 ORTHO05D006682 1.9e-191 673.7 892 40.6
HPP92_006936 Vanilla planifolia HOM05D005600 ORTHO05D006682 1.0e-189 667.9 560 63.6
CDE01G0031 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 1.7e-184 650.6 897 43.9
Nitab4.5_0008957g0040 Nicotiana tabacum HOM05D005600 ORTHO05D006682 9.3e-183 644.8 484 70.2
Eucgr.B03713 Eucalyptus grandis HOM05D005600 ORTHO05D006682 1.0e-181 641.3 494 68.8
CBR_g4015 Chara braunii HOM05D005600 ORTHO05D006682 7.6e-169 598.6 941 38.4
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 1.0e-152 545.0 861 41.1
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 2.7e-150 537.0 411 65.0
VMungo1383G0719 Vigna mungo HOM05D005600 ORTHO05D006682 7.9e-150 535.4 442 64.5
SHI27472 Sapria himalayana HOM05D005600 ORTHO05D006682 1.3e-147 528.1 501 54.5
Zm00001eb016670 Zea mays HOM05D005600 ORTHO05D006682 2.8e-147 526.9 504 55.6
Eucgr.B03714 Eucalyptus grandis HOM05D005600 ORTHO05D006682 1.3e-123 448.4 357 64.7
SEGI_34765 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.4e-122 444.9 385 59.7
BcaC04g23081 Brassica carinata HOM05D005600 ORTHO05D006682 8.0e-118 429.1 620 43.1
CDE10G0769 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 3.1e-77 294.3 162 85.2
ClCG03G012990 Citrullus lanatus HOM05D005600 ORTHO05D006682 1.5e-71 275.4 215 62.8
BolC9t54127H Brassica oleracea HOM05D005600 ORTHO05D006682 2.1e-70 271.6 387 45.5
PRCOL_00004432 Prasinoderma coloniale HOM05D005600 ORTHO05D006682 1.4e-58 232.3 673 27.3
MCO11G503 Micromonas commoda HOM05D005600 ORTHO05D006682 3.1e-53 214.5 531 29.9
Lj2A14T50 Lonicera japonica HOM05D005600 ORTHO05D006682 6.9e-45 186.8 176 56.2
SEGI_17739 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.4e-34 152.5 127 59.1
SEGI_12823 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.9e-26 125.6 89 60.7
Cre12.g524100 Chlamydomonas reinhardtii HOM05D005600 ORTHO05D006682 4.2e-26 124.4 520 25.2
MBI19_g44409_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 2.8e-22 111.7 100 57.0
Atru.chr3.1844 Acer truncatum HOM05D005600 ORTHO05D006682 1.8e-21 109.0 122 50.8
VMungo1383G3426 Vigna mungo HOM05D000002 ORTHO05D000001 2.1e-17 95.5 138 37.7
A09p10400 Brassica napus HOM05D005600 ORTHO05D006682 4.7e-17 94.4 88 54.5
Cfa024653 Carpinus fangiana HOM05D005600 ORTHO05D006682 4.7e-17 94.4 481 21.2
VMungo1383G0187 Vigna mungo HOM05D005600 ORTHO05D006682 4.7e-17 94.4 42 97.6
Sabra09G0035600 Salix brachista HOM05D005600 ORTHO05D006682 6.7e-16 90.5 130 40.0
SEGI_14354 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 2.4e-13 82.0 95 45.3
QL10p024418 Quercus lobata HOM05D005600 ORTHO05D006682 5.7e-07 60.8 44 61.4
MBI19_g44872_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 7.5e-07 60.5 75 44.0


User provided reference genes

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