Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1732.2 863 100.0
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1675.6 863 97.5
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1498.0 896 86.5
Actinidia35417 Actinidia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1473.0 864 85.9
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 0.0e+00 1457.2 860 82.6
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 0.0e+00 1434.1 864 82.4
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 0.0e+00 1428.3 926 78.1
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 0.0e+00 1420.6 864 82.5
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 0.0e+00 1384.8 1006 72.0
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 0.0e+00 1378.2 861 77.6
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 0.0e+00 1376.7 862 77.1
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 0.0e+00 1375.9 861 77.6
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 0.0e+00 1375.5 862 77.6
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 0.0e+00 1373.6 871 78.5
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 0.0e+00 1373.2 864 78.4
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1372.1 860 78.8
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 0.0e+00 1372.1 862 78.5
Atru.chr10.100 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1367.8 860 78.4
Atru.chr10.118 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1367.8 860 78.4
Manes.06G161000 Manihot esculenta HOM05D005600 ORTHO05D006682 0.0e+00 1366.7 868 78.0
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 0.0e+00 1364.0 865 78.7
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 0.0e+00 1357.4 864 78.0
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 0.0e+00 1349.3 868 77.1
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 0.0e+00 1340.5 865 76.6
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1335.9 864 75.7
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 0.0e+00 1334.3 858 77.0
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 0.0e+00 1334.3 864 75.9
Cpa.g.sc84.9 Carica papaya HOM05D005600 ORTHO05D006682 0.0e+00 1333.5 865 76.6
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 0.0e+00 1332.0 867 76.6
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1329.3 867 76.5
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 0.0e+00 1328.2 865 76.2
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1327.0 863 75.6
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 0.0e+00 1325.8 866 75.9
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 0.0e+00 1324.7 884 75.0
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1324.3 867 76.4
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 0.0e+00 1318.1 853 75.0
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1315.1 883 74.4
DCAR_009654 Daucus carota HOM05D005600 ORTHO05D006682 0.0e+00 1313.5 874 75.2
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1312.7 861 75.0
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1309.7 898 72.9
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1307.4 861 74.8
TWI39G0768 Tripterygium wilfordii HOM05D005600 ORTHO05D006682 0.0e+00 1305.4 860 75.8
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1304.7 861 73.9
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1302.3 862 74.1
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1300.4 864 74.5
Nn3g21398 Nelumbo nucifera HOM05D005600 ORTHO05D006682 0.0e+00 1299.3 864 74.5
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 0.0e+00 1297.3 858 75.2
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 0.0e+00 1295.4 863 74.2
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 0.0e+00 1295.4 871 74.9
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 0.0e+00 1291.6 865 72.9
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 0.0e+00 1284.2 859 74.4
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 0.0e+00 1283.5 859 72.3
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 0.0e+00 1283.5 863 73.2
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 0.0e+00 1281.2 862 73.2
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1280.8 859 73.8
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 0.0e+00 1279.6 865 72.4
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 0.0e+00 1276.5 862 73.7
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 0.0e+00 1275.4 827 75.1
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1271.5 862 72.4
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 0.0e+00 1266.9 862 72.4
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 0.0e+00 1263.4 859 71.4
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 0.0e+00 1262.3 918 69.6
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1260.4 837 74.2
Lsat_1_v5_gn_7_110720 Lactuca sativa HOM05D005600 ORTHO05D006682 0.0e+00 1257.7 864 71.6
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 0.0e+00 1254.6 862 71.9
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1245.3 863 72.0
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1244.2 860 70.3
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1242.6 860 70.2
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 0.0e+00 1242.3 863 71.3
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1241.5 863 71.8
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 0.0e+00 1241.1 861 70.8
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 0.0e+00 1234.6 949 66.9
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1233.4 863 69.6
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 0.0e+00 1232.6 868 68.7
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 0.0e+00 1221.1 860 71.7
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1220.7 860 69.5
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 0.0e+00 1215.7 860 69.0
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 0.0e+00 1211.8 860 69.1
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1209.1 856 69.2
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1209.1 860 68.8
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 0.0e+00 1209.1 860 69.1
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 0.0e+00 1207.6 860 68.7
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1206.0 860 68.7
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 0.0e+00 1204.9 860 68.6
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 0.0e+00 1203.3 861 68.6
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 0.0e+00 1185.2 855 67.7
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 0.0e+00 1179.9 907 65.4
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 0.0e+00 1171.0 867 66.9
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 0.0e+00 1170.2 860 67.0
Hma1.2p1_0151F.1_g067180 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 0.0e+00 1159.8 692 82.1
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1154.0 784 73.0
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 0.0e+00 1127.9 887 66.0
Sabra09G0035700 Salix brachista HOM05D005600 ORTHO05D006682 0.0e+00 1115.1 948 63.5
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 0.0e+00 1113.2 868 62.8
COL.COLO4_36487 Corchorus olitorius HOM05D005600 ORTHO05D006682 0.0e+00 1077.4 751 74.0
Ca_08130_v3 Cicer arietinum L. HOM05D005600 ORTHO05D006682 1.1e-303 1046.6 790 68.1
MD11G1186900 Malus domestica HOM05D005600 ORTHO05D006682 1.3e-288 996.5 645 77.1
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 4.4e-273 944.9 877 53.0
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 1.4e-271 939.9 872 53.2
ClCG03G012970 Citrullus lanatus HOM05D005600 ORTHO05D006682 3.6e-267 925.2 628 73.6
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 1.4e-263 913.3 873 52.3
SMO236G0107 Selaginella moellendorffii HOM05D005600 ORTHO05D006682 4.9e-232 808.5 870 46.2
Lj2A14G43 Lonicera japonica HOM05D005600 ORTHO05D006682 9.2e-231 804.3 580 72.2
CDE01G0031 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 8.6e-229 797.7 877 50.4
HPP92_006936 Vanilla planifolia HOM05D005600 ORTHO05D006682 4.3e-220 768.8 557 69.5
Eucgr.B03713 Eucalyptus grandis HOM05D005600 ORTHO05D006682 5.1e-213 745.3 494 76.1
Nitab4.5_0008957g0040 Nicotiana tabacum HOM05D005600 ORTHO05D006682 1.6e-211 740.3 484 77.3
CBR_g4015 Chara braunii HOM05D005600 ORTHO05D006682 1.6e-203 713.8 964 41.2
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 4.8e-187 659.1 840 45.5
VMungo1383G0719 Vigna mungo HOM05D005600 ORTHO05D006682 2.0e-177 627.1 442 71.5
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 3.4e-177 626.3 381 77.4
Zm00001eb016670 Zea mays HOM05D005600 ORTHO05D006682 2.7e-174 616.7 501 61.5
SHI27472 Sapria himalayana HOM05D005600 ORTHO05D006682 6.7e-173 612.1 481 61.1
Eucgr.B03714 Eucalyptus grandis HOM05D005600 ORTHO05D006682 1.1e-146 525.0 327 77.4
BcaC04g23081 Brassica carinata HOM05D005600 ORTHO05D006682 2.9e-136 490.3 626 46.2
SEGI_34765 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.1e-135 488.4 378 64.8
BolC9t54127H Brassica oleracea HOM05D005600 ORTHO05D006682 1.9e-87 328.2 388 50.5
ClCG03G012990 Citrullus lanatus HOM05D005600 ORTHO05D006682 1.4e-85 322.0 215 70.7
CDE10G0769 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 4.2e-82 310.5 162 88.9
PRCOL_00004432 Prasinoderma coloniale HOM05D005600 ORTHO05D006682 3.2e-74 284.3 707 29.1
MCO11G503 Micromonas commoda HOM05D005600 ORTHO05D006682 4.6e-65 253.8 699 27.8
Lj2A14T50 Lonicera japonica HOM05D005600 ORTHO05D006682 6.3e-54 216.9 156 67.9
Cre12.g524100 Chlamydomonas reinhardtii HOM05D005600 ORTHO05D006682 3.5e-36 157.9 524 26.9
SEGI_17739 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.1e-34 152.9 125 59.2
SEGI_12823 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 4.4e-31 141.0 97 63.9
VMungo1383G3426 Vigna mungo HOM05D000002 ORTHO05D000001 4.4e-31 141.0 127 49.6
Cfa024653 Carpinus fangiana HOM05D005600 ORTHO05D006682 9.8e-31 139.8 648 20.5
Atru.chr3.1844 Acer truncatum HOM05D005600 ORTHO05D006682 3.7e-30 137.9 115 60.0
Sabra09G0035600 Salix brachista HOM05D005600 ORTHO05D006682 1.8e-29 135.6 120 55.0
MBI19_g44409_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 7.2e-26 123.6 116 55.2
A09p10400 Brassica napus HOM05D005600 ORTHO05D006682 2.0e-20 105.5 88 56.8
SEGI_14354 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.5e-18 99.4 132 39.4
VMungo1383G0187 Vigna mungo HOM05D005600 ORTHO05D006682 3.6e-17 94.7 42 97.6
MBI19_g44872_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 1.8e-08 65.9 84 45.2
QL10p024418 Quercus lobata HOM05D005600 ORTHO05D006682 1.5e-07 62.8 44 65.9
Hund17892 Selenicereus undatus HOM05D026955 ORTHO05D006682 8.3e-06 57.0 28 89.3


User provided reference genes

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