Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_36487 Corchorus olitorius HOM05D005600 ORTHO05D006682 0.0e+00 1368.2 705 100.0
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 0.0e+00 1194.5 750 83.3
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 0.0e+00 1163.3 751 81.2
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1161.7 751 81.4
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1156.7 751 81.0
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 0.0e+00 1142.1 753 76.9
Cpa.g.sc84.9 Carica papaya HOM05D005600 ORTHO05D006682 0.0e+00 1132.5 751 76.4
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 0.0e+00 1130.9 751 76.6
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1119.8 748 75.7
Atru.chr10.100 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1111.7 748 75.0
Atru.chr10.118 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1111.7 748 75.0
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 0.0e+00 1095.5 753 76.1
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 0.0e+00 1095.1 750 74.5
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1091.3 748 73.9
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1090.5 736 74.2
Manes.06G161000 Manihot esculenta HOM05D005600 ORTHO05D006682 0.0e+00 1090.1 749 74.2
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 0.0e+00 1088.6 751 75.9
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 0.0e+00 1086.6 748 74.5
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 0.0e+00 1085.1 748 73.0
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1083.9 766 71.5
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 0.0e+00 1082.8 749 73.0
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 0.0e+00 1082.4 747 75.0
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1080.1 751 74.0
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1079.7 751 74.0
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 0.0e+00 1077.4 752 73.5
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 4.8e-312 1074.7 773 72.8
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 4.8e-312 1074.7 751 72.6
TWI39G0768 Tripterygium wilfordii HOM05D005600 ORTHO05D006682 4.3e-311 1070.8 748 75.1
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 1.3e-310 1069.3 782 69.9
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 3.7e-310 1067.8 754 73.2
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 1.3e-307 1059.3 752 71.8
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 3.0e-304 1048.1 751 71.4
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 5.1e-304 1047.3 747 73.6
Actinidia35417 Actinidia chinensis HOM05D005600 ORTHO05D006682 2.5e-303 1045.0 752 71.8
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 9.6e-303 1043.1 748 70.9
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 2.8e-302 1041.6 748 69.4
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 1.5e-300 1035.8 747 70.4
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 3.4e-300 1034.6 748 70.1
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 1.1e-298 1029.6 751 70.2
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 2.5e-298 1028.5 748 69.5
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 2.5e-298 1028.5 749 70.5
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 5.5e-298 1027.3 753 69.3
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 2.1e-297 1025.4 748 69.4
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 3.5e-297 1024.6 751 70.0
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 4.6e-297 1024.2 750 70.9
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 1.8e-296 1022.3 748 69.4
Nn3g21398 Nelumbo nucifera HOM05D005600 ORTHO05D006682 6.7e-296 1020.4 748 70.1
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 2.5e-295 1018.5 750 71.2
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 3.3e-295 1018.1 749 69.2
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 4.3e-295 1017.7 792 67.4
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 5.7e-295 1017.3 748 69.5
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 1.3e-294 1016.1 750 71.7
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 1.3e-294 1016.1 751 70.8
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 1.6e-294 1015.8 718 72.7
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 1.4e-293 1012.7 814 65.5
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 2.6e-292 1008.4 746 71.4
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 1.3e-291 1006.1 746 71.3
Sabra09G0035700 Salix brachista HOM05D005600 ORTHO05D006682 2.2e-291 1005.4 919 61.6
DCAR_009654 Daucus carota HOM05D005600 ORTHO05D006682 7.2e-290 1000.3 763 68.8
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 2.7e-289 998.4 749 69.0
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 3.3e-287 991.5 735 69.5
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 9.7e-287 989.9 750 67.5
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 2.2e-286 988.8 751 67.6
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 8.2e-286 986.9 750 67.2
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 2.4e-285 985.3 751 67.8
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 4.5e-284 981.1 747 66.8
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 2.9e-283 978.4 751 67.1
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 1.1e-282 976.5 736 68.2
Hma1.2p1_0151F.1_g067180 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 1.2e-281 973.0 695 71.4
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 4.6e-281 971.1 751 67.1
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 1.4e-280 969.5 747 66.3
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 5.1e-280 967.6 747 66.1
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 2.2e-278 962.2 747 66.5
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 1.1e-277 959.9 751 67.9
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 3.1e-277 958.4 747 65.3
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 3.1e-277 958.4 807 64.6
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 6.9e-277 957.2 747 65.2
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 1.2e-276 956.4 747 65.1
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 3.4e-276 954.9 740 65.8
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 7.7e-276 953.7 747 65.2
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 1.7e-275 952.6 747 65.5
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 2.2e-275 952.2 747 65.1
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 6.5e-275 950.7 794 62.1
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 6.5e-275 950.7 747 64.9
Ca_08130_v3 Cicer arietinum L. HOM05D005600 ORTHO05D006682 3.2e-274 948.3 789 63.9
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 5.5e-274 947.6 747 64.8
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 1.6e-273 946.0 747 66.0
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 1.1e-271 939.9 757 64.2
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 2.0e-271 939.1 771 65.8
MD11G1186900 Malus domestica HOM05D005600 ORTHO05D006682 3.1e-269 931.8 648 72.8
Lsat_1_v5_gn_7_110720 Lactuca sativa HOM05D005600 ORTHO05D006682 1.5e-266 922.9 746 63.9
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 1.8e-264 916.0 839 59.2
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 2.9e-259 898.7 760 60.8
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 1.1e-258 896.7 749 63.0
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 6.5e-251 870.9 749 59.8
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 6.1e-249 864.4 672 67.1
ClCG03G012970 Citrullus lanatus HOM05D005600 ORTHO05D006682 1.2e-241 840.1 624 71.2
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 8.9e-240 833.9 780 58.5
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 2.8e-201 706.1 770 48.8
Eucgr.B03713 Eucalyptus grandis HOM05D005600 ORTHO05D006682 1.7e-198 696.8 481 73.2
Lj2A14G43 Lonicera japonica HOM05D005600 ORTHO05D006682 2.9e-198 696.0 571 64.8
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 6.0e-196 688.3 762 48.8
CDE01G0031 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 3.9e-195 685.6 639 58.5
Nitab4.5_0008957g0040 Nicotiana tabacum HOM05D005600 ORTHO05D006682 1.4e-192 677.2 474 71.7
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 3.8e-190 669.1 763 48.0
HPP92_006936 Vanilla planifolia HOM05D005600 ORTHO05D006682 2.3e-179 633.3 556 59.7
VMungo1383G0719 Vigna mungo HOM05D005600 ORTHO05D006682 2.4e-176 623.2 441 71.0
SMO236G0107 Selaginella moellendorffii HOM05D005600 ORTHO05D006682 1.6e-164 583.9 758 41.3
Zm00001eb016670 Zea mays HOM05D005600 ORTHO05D006682 2.9e-158 563.1 483 59.4
CBR_g4015 Chara braunii HOM05D005600 ORTHO05D006682 8.2e-145 518.5 838 39.4
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 1.4e-144 517.7 701 44.8
BcaC04g23081 Brassica carinata HOM05D005600 ORTHO05D006682 1.5e-138 497.7 569 50.1
SHI27472 Sapria himalayana HOM05D005600 ORTHO05D006682 6.1e-124 449.1 341 63.9
SEGI_34765 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 5.7e-122 442.6 424 56.1
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 4.0e-99 366.7 265 69.8
Eucgr.B03714 Eucalyptus grandis HOM05D005600 ORTHO05D006682 7.8e-95 352.4 210 81.0
BolC9t54127H Brassica oleracea HOM05D005600 ORTHO05D006682 9.0e-83 312.4 344 52.3
Lj2A14T50 Lonicera japonica HOM05D005600 ORTHO05D006682 1.7e-49 201.8 212 52.8
CDE10G0769 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 6.1e-47 193.4 162 61.7
PRCOL_00004432 Prasinoderma coloniale HOM05D005600 ORTHO05D006682 8.8e-46 189.5 519 28.5
ClCG03G012990 Citrullus lanatus HOM05D005600 ORTHO05D006682 2.6e-37 161.4 123 64.2
SEGI_17739 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 2.4e-35 154.8 127 59.8
SEGI_12823 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 2.4e-27 128.3 115 58.3
MBI19_g44409_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 2.2e-25 121.7 114 54.4
MCO11G503 Micromonas commoda HOM05D005600 ORTHO05D006682 3.6e-23 114.4 275 27.3
SEGI_14354 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 6.3e-20 103.6 131 43.5
Cre12.g524100 Chlamydomonas reinhardtii HOM05D005600 ORTHO05D006682 1.2e-18 99.4 363 26.2
A09p10400 Brassica napus HOM05D005600 ORTHO05D006682 1.6e-18 99.0 92 54.3
VMungo1383G0187 Vigna mungo HOM05D005600 ORTHO05D006682 3.8e-17 94.4 42 95.2
Cfa024653 Carpinus fangiana HOM05D005600 ORTHO05D006682 1.9e-16 92.0 318 23.6
QL10p024418 Quercus lobata HOM05D005600 ORTHO05D006682 1.9e-08 65.5 41 70.7
MBI19_g44872_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 3.3e-08 64.7 84 44.0
Sabra16G0154900 Salix brachista HOM05D005600 ORTHO05D349220 2.1e-07 62.0 42 61.9


User provided reference genes

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