Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 1.3e-115 420.2 294 100.0
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 1.1e-103 380.6 284 94.7
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 2.8e-78 296.2 274 74.5
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 1.9e-74 283.5 210 76.7
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 7.1e-74 281.6 188 78.7
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 3.9e-72 275.8 147 93.2
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 3.3e-71 272.7 281 68.7
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 3.3e-71 272.7 147 91.8
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 5.6e-71 271.9 147 91.2
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 2.1e-70 270.0 281 67.3
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 2.1e-70 270.0 186 82.8
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 4.7e-70 268.9 175 81.7
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 6.2e-70 268.5 205 69.8
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 1.4e-69 267.3 191 74.3
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 1.8e-69 266.9 147 90.5
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 3.1e-69 266.2 148 90.5
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 3.1e-69 266.2 148 91.2
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 4.0e-69 265.8 148 89.9
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 6.9e-69 265.0 187 74.9
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 6.9e-69 265.0 278 67.6
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 8.9e-69 264.6 255 75.3
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 8.9e-69 264.6 187 75.9
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 8.9e-69 264.6 148 89.9
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 8.9e-69 264.6 148 89.9
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 1.2e-68 264.2 148 89.9
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 1.2e-68 264.2 148 89.9
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 1.5e-68 263.8 185 75.7
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 1.5e-68 263.8 284 65.5
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 2.0e-68 263.5 181 76.8
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 2.0e-68 263.5 181 76.8
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 2.0e-68 263.5 216 73.6
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 2.0e-68 263.5 286 70.6
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 2.6e-68 263.1 270 73.7
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 3.4e-68 262.7 149 89.3
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 5.8e-68 261.9 281 60.9
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 7.6e-68 261.5 175 82.9
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 7.6e-68 261.5 148 87.8
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 9.9e-68 261.2 148 88.5
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 9.9e-68 261.2 186 74.7
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 9.9e-68 261.2 149 89.3
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 9.9e-68 261.2 148 88.5
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 9.9e-68 261.2 190 71.6
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 9.9e-68 261.2 285 70.2
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 9.9e-68 261.2 148 88.5
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 1.3e-67 260.8 219 67.1
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 1.3e-67 260.8 188 75.0
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 1.7e-67 260.4 180 82.8
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 1.7e-67 260.4 183 76.5
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 1.7e-67 260.4 145 89.7
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 2.2e-67 260.0 185 76.2
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 2.2e-67 260.0 213 77.5
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 2.2e-67 260.0 148 88.5
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 2.9e-67 259.6 148 88.5
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 2.9e-67 259.6 148 88.5
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 2.9e-67 259.6 148 88.5
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 2.9e-67 259.6 148 88.5
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 2.9e-67 259.6 150 88.0
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 4.9e-67 258.8 148 87.8
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 4.9e-67 258.8 150 88.0
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 4.9e-67 258.8 147 87.1
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 6.4e-67 258.5 148 87.8
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 6.4e-67 258.5 148 87.8
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 6.4e-67 258.5 182 83.0
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 6.4e-67 258.5 145 89.7
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 1.1e-66 257.7 148 87.8
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 1.1e-66 257.7 148 87.8
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 1.1e-66 257.7 184 76.1
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 1.4e-66 257.3 149 85.9
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 1.4e-66 257.3 150 87.3
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 1.9e-66 256.9 149 86.6
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 1.9e-66 256.9 213 77.0
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 2.4e-66 256.5 188 74.5
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 2.4e-66 256.5 188 74.5
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 5.4e-66 255.4 290 61.4
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 5.4e-66 255.4 148 86.5
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 5.4e-66 255.4 147 86.4
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 1.2e-65 254.2 148 86.5
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 1.6e-65 253.8 288 62.2
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 1.6e-65 253.8 149 84.6
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 2.1e-65 253.4 288 61.8
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 3.5e-65 252.7 183 73.8
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 4.6e-65 252.3 242 62.0
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 4.6e-65 252.3 192 71.9
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 6.0e-65 251.9 239 61.1
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 6.0e-65 251.9 202 69.3
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 7.8e-65 251.5 149 85.9
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 1.0e-64 251.1 149 84.6
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 1.0e-64 251.1 149 84.6
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 1.0e-64 251.1 149 84.6
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 1.3e-64 250.8 186 73.1
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 1.3e-64 250.8 202 68.8
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 1.7e-64 250.4 186 72.6
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 1.7e-64 250.4 148 85.8
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 2.3e-64 250.0 149 84.6
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 3.9e-64 249.2 177 75.1
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 3.9e-64 249.2 153 83.0
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 3.9e-64 249.2 153 83.0
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 3.9e-64 249.2 244 69.7
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 5.1e-64 248.8 184 73.4
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 5.1e-64 248.8 184 73.4
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 6.6e-64 248.4 150 84.7
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 1.1e-63 247.7 193 76.2
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 1.1e-63 247.7 147 83.7
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 1.5e-63 247.3 150 84.0
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 1.9e-63 246.9 213 74.6
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 2.5e-63 246.5 147 84.4
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 3.3e-63 246.1 149 85.2
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 4.3e-63 245.7 147 83.7
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 5.6e-63 245.4 197 68.5
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 7.3e-63 245.0 140 87.9
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 9.6e-63 244.6 153 80.4
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 1.6e-62 243.8 146 84.2
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 4.8e-62 242.3 269 57.2
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 6.2e-62 241.9 197 67.5
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 6.2e-62 241.9 175 72.6
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 6.2e-62 241.9 197 67.5
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 1.4e-61 240.7 202 67.8
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 1.4e-61 240.7 154 79.9
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 1.8e-61 240.4 151 82.8
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 2.4e-61 240.0 149 83.9
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 3.1e-61 239.6 146 84.9
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 5.3e-61 238.8 143 83.2
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 5.3e-61 238.8 148 81.8
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 5.3e-61 238.8 147 81.6
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 1.2e-60 237.7 147 81.6
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 4.5e-60 235.7 186 75.3
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.3e-59 234.2 171 71.3
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 3.8e-59 232.6 271 68.3
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 6.4e-59 231.9 141 83.7
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 8.4e-59 231.5 146 80.8
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 2.4e-58 229.9 149 80.5
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 4.2e-58 229.2 130 89.2
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 4.3e-55 219.2 135 82.2
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 6.2e-54 215.3 269 60.2
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 6.2e-54 215.3 269 60.2
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 1.4e-53 214.2 145 74.5
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 1.2e-52 211.1 187 64.2
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 1.4e-50 204.1 117 88.0
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 5.5e-50 202.2 123 82.9
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 1.3e-48 197.6 145 67.6
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 6.7e-48 195.3 158 69.0
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 3.3e-47 193.0 118 83.1
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 9.6e-47 191.4 150 69.3
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.4e-45 187.6 155 67.7
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 2.6e-44 183.3 109 85.3
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 8.4e-43 178.3 147 62.6
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 1.2e-41 174.5 123 70.7
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 8.7e-40 168.3 147 63.3
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 9.6e-39 164.9 187 52.4
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 1.3e-35 154.5 94 83.0
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 1.1e-34 151.4 94 79.8
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 5.1e-32 142.5 102 72.5
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.1e-31 141.4 145 55.9
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 5.7e-31 139.0 145 55.9
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 5.7e-31 139.0 191 48.2
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 5.7e-31 139.0 191 48.2
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 1.0e-27 128.3 137 54.7
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 3.7e-22 109.8 139 49.6
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 6.5e-19 99.0 53 88.7
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 8.2e-14 82.0 66 68.2
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 3.1e-13 80.1 50 82.0
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 1.2e-12 78.2 80 57.5
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 1.0e-11 75.1 41 82.9


User provided reference genes

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