Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G1298 Ceratophyllum demersum HOM05D006093 ORTHO05D007652 1.6e-192 676.0 361 100.0
Lj3g0003829 Lotus japonicus HOM05D006093 ORTHO05D007652 1.0e-130 470.7 326 72.1
arahy.Tifrunner.gnm1.ann1.5T1ZSX Arachis hypogaea HOM05D006093 ORTHO05D007652 1.1e-129 467.2 292 78.8
arahy.Tifrunner.gnm1.ann1.RDN84X Arachis hypogaea HOM05D006093 ORTHO05D007652 1.1e-129 467.2 292 78.8
Thecc.06G031100 Theobroma cacao HOM05D006093 ORTHO05D007652 1.5e-129 466.8 292 78.1
COL.COLO4_11898 Corchorus olitorius HOM05D006093 ORTHO05D007652 1.2e-128 463.8 292 78.1
Lalb_Chr24g0395421 Lupinus albus HOM05D006093 ORTHO05D007652 1.2e-128 463.8 351 67.8
ATR0800G026 Amborella trichopoda HOM05D006093 ORTHO05D007652 2.7e-128 462.6 324 72.2
TPR.G37262 Trifolium pratense HOM05D006093 ORTHO05D007652 6.1e-128 461.5 326 71.2
TAR626G1009 Trochodendron aralioides HOM05D006093 ORTHO05D007652 6.1e-128 461.5 299 76.3
Manes.11G058700 Manihot esculenta HOM05D006093 ORTHO05D007652 2.3e-127 459.5 365 66.6
Gohir.D10G082500 Gossypium hirsutum HOM05D006093 ORTHO05D007652 1.2e-126 457.2 292 76.7
Eucgr.F03905 Eucalyptus grandis HOM05D006093 ORTHO05D007652 2.0e-126 456.4 290 75.5
CSS0022367 Camellia sinensis var. sinensis HOM05D006093 ORTHO05D007652 2.6e-126 456.1 323 71.2
Ciclev10025737m.g Citrus clementina HOM05D006093 ORTHO05D007652 4.4e-126 455.3 306 74.2
Medtr2g104100 Medicago truncatula HOM05D006093 ORTHO05D007652 3.7e-125 452.2 306 73.2
CiPaw.01G249800 Carya illinoinensis HOM05D006093 ORTHO05D007652 4.9e-125 451.8 317 71.0
AT1G52500 Arabidopsis thaliana HOM05D006093 ORTHO05D007652 6.3e-125 451.4 281 78.3
Duzib235G0399 Durio zibethinus HOM05D006093 ORTHO05D007652 6.3e-125 451.4 308 73.4
MBI15_g24195_MAGBIO Magnolia biondii HOM05D006093 ORTHO05D007652 8.3e-125 451.1 293 76.8
Atru.chr1.2881 Acer truncatum HOM05D006093 ORTHO05D007652 1.1e-124 450.7 305 73.8
PSO170G6797 Papaver somniferum HOM05D006093 ORTHO05D007652 1.1e-124 450.7 307 73.3
Glyma.13G366800 Glycine max HOM05D006093 ORTHO05D007652 1.4e-124 450.3 350 66.3
Hma1.2p1_0017F.1_g011320 Hydrangea macrophylla HOM05D006093 ORTHO05D007652 1.4e-124 450.3 303 73.6
Carub.0001s4146 Capsella rubella HOM05D006093 ORTHO05D007652 2.4e-124 449.5 306 73.9
BcaC08g43998 Brassica carinata HOM05D006093 ORTHO05D007652 3.1e-124 449.1 306 73.2
RcHm_v2.0_Chr2g0134861 Rosa chinensis HOM05D006093 ORTHO05D007652 4.1e-124 448.7 326 71.2
CsaV3_4G001910 Cucumis sativus L. HOM05D006093 ORTHO05D007652 5.4e-124 448.4 306 72.9
VMungo1080G1109 Vigna mungo HOM05D006093 ORTHO05D007652 5.4e-124 448.4 315 71.1
A05p18970 Brassica napus HOM05D006093 ORTHO05D007652 9.2e-124 447.6 281 77.2
BraA05t20794Z Brassica rapa HOM05D006093 ORTHO05D007652 9.2e-124 447.6 281 77.2
PGSC0003DMG400014146 Solanum tuberosum HOM05D006093 ORTHO05D007652 9.2e-124 447.6 302 72.5
vmacro16879 Vaccinium macrocarpon HOM05D006093 ORTHO05D007652 1.6e-123 446.8 352 67.6
BolC6t36581H Brassica oleracea HOM05D006093 ORTHO05D007652 2.0e-123 446.4 306 72.5
Sp1g39050 Schrenkiella parvula HOM05D006093 ORTHO05D007652 4.5e-123 445.3 306 72.5
THA.LOC104818014 Tarenaya hassleriana HOM05D006093 ORTHO05D007652 4.5e-123 445.3 305 71.5
Nitab4.5_0010806g0010 Nicotiana tabacum HOM05D006093 ORTHO05D007652 7.7e-123 444.5 305 70.2
Migut.I00747 Erythranthe guttata HOM05D006093 ORTHO05D007652 1.0e-122 444.1 319 70.2
Sed0013008 Sechium edule HOM05D006093 ORTHO05D007652 1.7e-122 443.4 324 68.2
BcaB02g10988 Brassica carinata HOM05D006093 ORTHO05D007652 2.3e-122 443.0 281 76.9
Thhalv10011553m.g Eutrema salsugineum HOM05D006093 ORTHO05D007652 2.3e-122 443.0 306 72.5
MD17G1215000 Malus domestica HOM05D006093 ORTHO05D007652 2.3e-122 443.0 305 72.5
FvH4_6g29401 Fragaria vesca HOM05D006093 ORTHO05D007652 2.9e-122 442.6 326 70.2
FAN14G2225 Fragaria x ananassa HOM05D006093 ORTHO05D007652 2.9e-122 442.6 326 70.2
Potri.003G031100 Populus trichocarpa HOM05D006093 ORTHO05D007652 3.8e-122 442.2 292 74.3
Lj5A75T43 Lonicera japonica HOM05D006093 ORTHO05D007652 5.0e-122 441.8 323 69.3
Solyc03g117510.4 Solanum lycopersicum HOM05D006093 ORTHO05D007652 5.6e-121 438.3 302 71.5
HanXRQChr02g0033451 Helianthus annuus HOM05D006093 ORTHO05D007652 7.3e-121 438.0 281 75.8
ECA238G2964 Erigeron canadensis HOM05D005083 ORTHO05D006310 1.2e-120 437.2 314 70.4
FAN09G4542 Fragaria x ananassa HOM05D006093 ORTHO05D007652 1.6e-120 436.8 326 69.6
Sopen03g036410 Solanum pennellii HOM05D006093 ORTHO05D007652 2.1e-120 436.4 302 71.5
MSTRG.11153 Avicennia marina HOM05D006093 ORTHO05D007652 8.0e-120 434.5 290 73.1
Gorai.011G089400 Gossypium raimondii HOM05D006093 ORTHO05D007652 1.8e-119 433.3 343 65.3
CANSAT56G0666 Cannabis sativa HOM05D006093 ORTHO05D007652 6.8e-119 431.4 323 69.0
HPP92_003851 Vanilla planifolia HOM05D006093 ORTHO05D007652 1.2e-118 430.6 367 60.8
AUR62011503 Chenopodium quinoa HOM05D006093 ORTHO05D007652 1.5e-118 430.3 290 72.4
EL10Ac9g21886 Beta vulgaris HOM05D006093 ORTHO05D007652 2.0e-118 429.9 292 72.6
Cc04_g04560 Coffea canephora HOM05D006093 ORTHO05D007652 2.6e-118 429.5 281 76.2
Cpa.g.sc167.9 Carica papaya HOM05D006093 ORTHO05D007652 3.4e-118 429.1 268 77.6
Aa31LG10G2500 Aethionema arabicum HOM05D006093 ORTHO05D007652 4.4e-118 428.7 304 70.7
QL05p032033 Quercus lobata HOM05D006093 ORTHO05D007652 4.4e-118 428.7 343 65.3
Ca_01048_v3 Cicer arietinum L. HOM05D006093 ORTHO05D007652 1.7e-117 426.8 355 62.5
TWI12G0620 Tripterygium wilfordii HOM05D006093 ORTHO05D007652 2.9e-117 426.0 327 67.3
Gohir.A10G068900 Gossypium hirsutum HOM05D006093 ORTHO05D007652 6.4e-117 424.9 298 72.5
AUR62016319 Chenopodium quinoa HOM05D006093 ORTHO05D007652 8.3e-117 424.5 361 61.5
Phvul.005G179300 Phaseolus vulgaris HOM05D006093 ORTHO05D007652 1.8e-116 423.3 325 67.1
Rhsim12G0190000 Rhododendron simsii HOM05D006093 ORTHO05D007652 4.1e-116 422.2 344 64.5
DCAR_025523 Daucus carota HOM05D006093 ORTHO05D007652 2.3e-114 416.4 288 71.5
CAN.G407.11 Capsicum annuum HOM05D006093 ORTHO05D007652 2.5e-113 412.9 306 68.3
Peaxi162Scf00553g00627 Petunia axillaris HOM05D006093 ORTHO05D007652 9.5e-113 411.0 362 60.2
Zm00001eb275260 Zea mays HOM05D006093 ORTHO05D007652 6.2e-112 408.3 307 65.8
ClCG07G012240 Citrullus lanatus HOM05D006093 ORTHO05D007652 1.0e-111 407.5 405 54.8
FAN05G1370 Fragaria x ananassa HOM05D006093 ORTHO05D007652 1.4e-111 407.1 327 66.1
Os08g0304900 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 3.1e-111 406.0 313 65.2
Manes.04G110800 Manihot esculenta HOM05D006093 ORTHO05D007652 6.8e-111 404.8 269 74.0
Hund00502 Selenicereus undatus HOM05D006093 ORTHO05D007652 6.8e-111 404.8 257 75.9
SalBow2G3638 Salvia bowleyana HOM05D006093 ORTHO05D007652 2.2e-109 399.8 351 60.4
Os06g0643600 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 2.4e-108 396.4 361 58.2
ECA247G0880 Erigeron canadensis HOM05D006093 ORTHO05D007652 2.7e-107 392.9 331 62.5
Nn8g39568 Nelumbo nucifera HOM05D006093 ORTHO05D007652 3.5e-107 392.5 261 75.9
unitig_62.g23594 Utricularia gibba HOM05D006093 ORTHO05D007652 7.8e-107 391.3 415 54.9
Ah.01g020480 Amaranthus hybridus HOM05D006093 ORTHO05D007652 5.2e-103 378.6 331 61.3
SGA_v2.0_scaffold5G02719 Striga asiatica HOM05D006093 ORTHO05D007652 6.8e-103 378.3 323 61.9
GSVIVG01017379001 Vitis vinifera HOM05D006093 ORTHO05D007652 4.4e-102 375.6 246 72.4
Lsat_1_v5_gn_1_34180 Lactuca sativa HOM05D006093 ORTHO05D007652 7.5e-102 374.8 321 62.0
HanXRQChr02g0033471 Helianthus annuus HOM05D006093 ORTHO05D007652 8.3e-101 371.3 314 62.7
MELO3C017842.2 Cucumis melo HOM05D006093 ORTHO05D007652 2.4e-100 369.8 337 58.2
Sabra03G0017500 Salix brachista HOM05D006093 ORTHO05D007652 4.1e-100 369.0 427 50.8
PGR102G2220 Punica granatum HOM05D006093 ORTHO05D007652 7.1e-100 368.2 282 67.7
Haze_16582 Corylus avellana HOM05D006093 ORTHO05D007652 2.1e-99 366.7 243 74.5
HanXRQChr02g0033461 Helianthus annuus HOM05D006093 ORTHO05D007652 2.1e-99 366.7 291 64.6
Psat5g303120 Pisum sativum HOM05D006093 ORTHO05D007652 4.6e-99 365.5 381 54.3
AL1G60740 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 4.0e-95 352.4 223 77.1
CARHR042600 Cardamine hirsuta HOM05D006093 ORTHO05D007652 4.0e-95 352.4 223 76.7
Nitab4.5_0003072g0060 Nicotiana tabacum HOM05D006093 ORTHO05D007652 4.4e-94 349.0 337 55.5
Prupe.3G090700 Prunus persica HOM05D006093 ORTHO05D007652 1.3e-93 347.4 264 68.6
Dinv30625 Davidia involucrata HOM05D006093 ORTHO05D007652 5.4e-92 342.0 261 67.4
Actinidia08791 Actinidia chinensis HOM05D006093 ORTHO05D007652 6.0e-91 338.6 230 73.5
Sc10g0008130 Simmondsia chinensis HOM05D006093 ORTHO05D007652 2.1e-88 330.1 214 75.7
Pp3c23_21520 Physcomitrium patens HOM05D006093 ORTHO05D007652 1.7e-85 320.5 327 52.0
Pp3c8_24280 Physcomitrium patens HOM05D006093 ORTHO05D007652 1.6e-83 313.9 311 52.4
Cfa001944 Carpinus fangiana HOM05D006093 ORTHO05D007652 4.8e-80 302.4 197 75.6
SHI11225 Sapria himalayana HOM05D006093 ORTHO05D007652 1.1e-79 301.2 337 51.0
Mapoly0015s0062 Marchantia polymorpha HOM05D006093 ORTHO05D007652 1.8e-79 300.4 326 48.8
SMO367G0330 Selaginella moellendorffii HOM05D006093 ORTHO05D007652 2.0e-78 297.0 252 61.5
Pp3c24_20180 Physcomitrium patens HOM05D006093 ORTHO05D007652 6.9e-71 271.9 323 46.4
Psat6g066000 Pisum sativum HOM05D006093 ORTHO05D007652 1.0e-66 258.1 180 70.6
PSO017G4202 Papaver somniferum HOM05D006093 ORTHO05D007652 3.9e-66 256.1 188 68.6
Cre10.g428433 Chlamydomonas reinhardtii HOM05D006093 ORTHO05D007652 8.1e-64 248.4 294 47.6
CBR_g884 Chara braunii HOM05D006093 ORTHO05D007652 2.4e-63 246.9 259 48.3
MCO15G481 Micromonas commoda HOM05D006093 ORTHO05D007652 1.6e-51 207.6 271 41.0
Eucgr.L03570 Eucalyptus grandis HOM05D006093 ORTHO05D007652 1.8e-47 194.1 115 77.4
GSVIVG01026354001 Vitis vinifera HOM05D006093 ORTHO05D007652 1.1e-44 184.9 114 76.3
Cfa026683 Carpinus fangiana HOM05D006093 ORTHO05D007652 2.7e-43 180.3 406 30.5
Cfa001945 Carpinus fangiana HOM05D006093 ORTHO05D007652 1.5e-41 174.5 308 41.2
Gohir.D10G074901 Gossypium hirsutum HOM05D006093 ORTHO05D007652 2.8e-40 170.2 121 68.6
AL7G45760 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 7.4e-33 145.6 101 71.3
SEGI_24777 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 1.1e-31 141.7 104 62.5
Dinv01702 Davidia involucrata HOM05D006093 ORTHO05D007652 5.5e-28 129.4 92 65.2
Actinidia08958 Actinidia chinensis HOM05D006093 ORTHO05D007652 7.2e-28 129.0 78 79.5
Dinv21460 Davidia involucrata HOM05D006093 ORTHO05D007652 5.2e-26 122.9 78 73.1
Oeu058023.3 Olea europaea HOM05D006093 ORTHO05D005440 1.5e-25 121.3 77 76.6
AL1G60750 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 4.2e-20 103.2 84 64.3
SEGI_39009 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 5.5e-20 102.8 91 56.0
CARHR042620 Cardamine hirsuta HOM05D006093 ORTHO05D007652 2.3e-18 97.4 139 45.3
Medtr3g118550 Medicago truncatula HOM05D006093 ORTHO05D007652 1.5e-17 94.7 130 46.2
Thecc.09G173900 Theobroma cacao HOM05D006093 ORTHO05D007652 4.1e-15 86.7 79 55.7
SGA_v2.0_scaffold72G24067 Striga asiatica HOM05D006093 ORTHO05D007652 9.1e-15 85.5 138 41.3
Sabra14G0094900 Salix brachista HOM05D006093 ORTHO05D007652 7.2e-12 75.9 55 70.9


User provided reference genes

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