Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g48721 Chara braunii HOM05D005037 ORTHO05D006274 3.4e-185 651.7 382 100.0
SEGI_36163 Sequoiadendron giganteum HOM05D005037 ORTHO05D006274 3.3e-63 246.5 330 45.2
Pp3c4_180 Physcomitrium patens HOM05D005037 ORTHO05D006274 1.2e-60 238.0 333 42.0
TAR381G0890 Trochodendron aralioides HOM05D005037 ORTHO05D006274 4.4e-60 236.1 326 39.9
SMO348G0060 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 1.7e-59 234.2 329 41.3
A05p21790 Brassica napus HOM05D005037 ORTHO05D006274 2.9e-59 233.4 331 36.6
BraA05t21100Z Brassica rapa HOM05D005037 ORTHO05D006274 2.9e-59 233.4 331 36.6
BolC5t32377H Brassica oleracea HOM05D005037 ORTHO05D006274 3.7e-59 233.0 331 37.2
ATR1136G011 Amborella trichopoda HOM05D005037 ORTHO05D006274 1.1e-58 231.5 327 39.1
AL1G51980 Arabidopsis lyrata HOM05D005037 ORTHO05D006274 1.4e-58 231.1 331 38.1
Duzib116G0940 Durio zibethinus HOM05D005037 ORTHO05D006274 1.4e-58 231.1 336 39.6
Thecc.08G141200 Theobroma cacao HOM05D005037 ORTHO05D006274 1.4e-58 231.1 336 39.0
BcaC05g27657 Brassica carinata HOM05D005037 ORTHO05D006274 3.2e-58 229.9 331 36.0
C05p36450 Brassica napus HOM05D005037 ORTHO05D006274 4.1e-58 229.6 331 36.0
Ciclev10001639m.g Citrus clementina HOM05D005037 ORTHO05D006274 4.1e-58 229.6 329 39.5
Cpa.g.sc13.102 Carica papaya HOM05D005037 ORTHO05D006274 7.1e-58 228.8 329 37.4
Atru.chr13.1666 Acer truncatum HOM05D005037 ORTHO05D006274 9.2e-58 228.4 329 38.3
A10p07730 Brassica napus HOM05D005037 ORTHO05D006274 9.2e-58 228.4 331 36.3
BraSC36t46032Z Brassica rapa HOM05D005037 ORTHO05D006274 9.2e-58 228.4 331 36.3
GSVIVG01010010001 Vitis vinifera HOM05D005037 ORTHO05D006274 9.2e-58 228.4 329 38.9
Gohir.A02G068100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 1.2e-57 228.0 332 38.9
Gohir.D02G074100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 1.2e-57 228.0 336 39.0
EL10Ac1g01450 Beta vulgaris HOM05D005037 ORTHO05D006274 2.1e-57 227.3 332 37.0
Duzib041G0013 Durio zibethinus HOM05D005037 ORTHO05D006274 2.1e-57 227.3 335 38.8
THA.LOC104798858 Tarenaya hassleriana HOM05D005037 ORTHO05D006274 2.1e-57 227.3 329 38.0
CARHR035400 Cardamine hirsuta HOM05D005037 ORTHO05D006274 2.7e-57 226.9 331 36.9
Manes.02G173400 Manihot esculenta HOM05D005037 ORTHO05D006274 2.7e-57 226.9 326 37.4
BcaB07g33972 Brassica carinata HOM05D005037 ORTHO05D006274 3.5e-57 226.5 331 36.6
Migut.C01102 Erythranthe guttata HOM05D005037 ORTHO05D006274 3.5e-57 226.5 326 37.4
AUR62027497 Chenopodium quinoa HOM05D005037 ORTHO05D006274 4.6e-57 226.1 327 37.6
Sabra05G0142600 Salix brachista HOM05D005037 ORTHO05D006274 4.6e-57 226.1 326 39.3
Hund17388 Selenicereus undatus HOM05D005037 ORTHO05D006274 4.6e-57 226.1 326 37.7
Eucgr.G02653 Eucalyptus grandis HOM05D005037 ORTHO05D006274 6.0e-57 225.7 329 37.4
Carub.0001s3480 Capsella rubella HOM05D005037 ORTHO05D006274 7.8e-57 225.3 331 36.3
EL10Ac4g08872 Beta vulgaris HOM05D005037 ORTHO05D006274 1.0e-56 224.9 332 36.7
Nn5g28553 Nelumbo nucifera HOM05D005037 ORTHO05D006274 1.3e-56 224.6 329 37.7
Potri.002G073200 Populus trichocarpa HOM05D005037 ORTHO05D006274 1.3e-56 224.6 326 37.4
Potri.005G186700 Populus trichocarpa HOM05D005037 ORTHO05D006274 1.3e-56 224.6 326 38.0
Actinidia16585 Actinidia chinensis HOM05D005037 ORTHO05D006274 1.7e-56 224.2 329 37.7
Aqoxy6G00356 Aquilegia oxysepala HOM05D005037 ORTHO05D006274 1.7e-56 224.2 329 38.3
Thhalv10011594m.g Eutrema salsugineum HOM05D005037 ORTHO05D006274 1.7e-56 224.2 331 36.0
Gorai.005G083500 Gossypium raimondii HOM05D005037 ORTHO05D006274 2.3e-56 223.8 337 38.9
PGR142G4097 Punica granatum HOM05D005037 ORTHO05D006274 3.0e-56 223.4 329 37.1
AT1G43860 Arabidopsis thaliana HOM05D005037 ORTHO05D006274 3.9e-56 223.0 331 36.3
Cc10_g13130 Coffea canephora HOM05D005037 ORTHO05D006274 3.9e-56 223.0 328 37.2
Peaxi162Scf00066g01930 Petunia axillaris HOM05D005037 ORTHO05D006274 5.1e-56 222.6 326 40.5
SalBow7G3864 Salvia bowleyana HOM05D005037 ORTHO05D006274 5.1e-56 222.6 326 36.2
TWI60G0144 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 5.1e-56 222.6 326 37.1
CSS0001186 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 6.6e-56 222.2 329 38.6
Sp1g33080 Schrenkiella parvula HOM05D005037 ORTHO05D006274 6.6e-56 222.2 331 36.6
MSTRG.1382 Avicennia marina HOM05D005037 ORTHO05D006274 8.6e-56 221.9 329 37.1
Lsat_1_v5_gn_1_9740 Lactuca sativa HOM05D005037 ORTHO05D006274 1.1e-55 221.5 326 38.7
TWI32G0322 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 1.1e-55 221.5 326 36.8
DCAR_019815 Daucus carota HOM05D005037 ORTHO05D006274 1.5e-55 221.1 326 38.3
Aa31LG6G9500 Aethionema arabicum HOM05D005037 ORTHO05D006274 1.9e-55 220.7 328 36.9
DCAR_015244 Daucus carota HOM05D005037 ORTHO05D006274 3.3e-55 219.9 326 37.7
Nitab4.5_0000174g0240 Nicotiana tabacum HOM05D005037 ORTHO05D006274 3.3e-55 219.9 326 40.5
Sc02g0004500 Simmondsia chinensis HOM05D005037 ORTHO05D006274 9.6e-55 218.4 326 37.1
AUR62033983 Chenopodium quinoa HOM05D005037 ORTHO05D006274 1.2e-54 218.0 327 37.0
Oeu002392.1 Olea europaea HOM05D005037 ORTHO05D006274 1.2e-54 218.0 329 37.1
Ah.10g032080 Amaranthus hybridus HOM05D005037 ORTHO05D006274 1.6e-54 217.6 331 37.2
PGSC0003DMG400024852 Solanum tuberosum HOM05D005037 ORTHO05D006274 2.1e-54 217.2 326 40.5
CAN.G657.3 Capsicum annuum HOM05D005037 ORTHO05D006274 2.8e-54 216.9 329 39.8
vmacro21120 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 2.8e-54 216.9 323 37.8
BcaB02g11416 Brassica carinata HOM05D005037 ORTHO05D006274 3.6e-54 216.5 334 35.0
Rhsim03G0093500 Rhododendron simsii HOM05D005037 ORTHO05D006274 3.6e-54 216.5 326 37.4
PSO421G0325 Papaver somniferum HOM05D005037 ORTHO05D006274 4.7e-54 216.1 326 35.9
vmacro08710 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 4.7e-54 216.1 326 36.2
SGA_v2.0_scaffold25G11149 Striga asiatica HOM05D005037 ORTHO05D006274 6.2e-54 215.7 322 40.7
CANSAT54G1160 Cannabis sativa HOM05D005037 ORTHO05D006274 8.1e-54 215.3 334 37.7
arahy.Tifrunner.gnm1.ann1.RY8QGI Arachis hypogaea HOM05D005037 ORTHO05D006274 1.4e-53 214.5 326 35.0
HanXRQChr04g0109491 Helianthus annuus HOM05D005037 ORTHO05D006274 2.4e-53 213.8 326 36.8
RcHm_v2.0_Chr6g0277561 Rosa chinensis HOM05D005037 ORTHO05D006274 2.4e-53 213.8 339 34.5
CDE08G0468 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 3.1e-53 213.4 326 36.2
PSO673G0007 Papaver somniferum HOM05D005037 ORTHO05D006274 4.0e-53 213.0 326 35.9
Nitab4.5_0002972g0050 Nicotiana tabacum HOM05D005037 ORTHO05D006274 5.2e-53 212.6 326 39.9
MELO3C010584.2 Cucumis melo HOM05D005037 ORTHO05D006274 6.8e-53 212.2 327 36.4
CsaV3_6G035600 Cucumis sativus L. HOM05D005037 ORTHO05D006274 6.8e-53 212.2 327 36.1
FAN24G2486 Fragaria x ananassa HOM05D005037 ORTHO05D006274 6.8e-53 212.2 323 36.2
Lalb_Chr02g0149921 Lupinus albus HOM05D005037 ORTHO05D006274 8.9e-53 211.8 327 36.4
MD05G1011400 Malus domestica HOM05D005037 ORTHO05D006274 8.9e-53 211.8 326 37.4
AagrBONN_evm.TU.Sc2ySwM_117.3544 Anthoceros agrestis HOM05D005037 ORTHO05D006274 1.5e-52 211.1 329 39.5
PSO673G0037 Papaver somniferum HOM05D005037 ORTHO05D006274 1.5e-52 211.1 331 35.0
PSO541G3185 Papaver somniferum HOM05D005037 ORTHO05D006274 2.0e-52 210.7 331 35.3
CDE02G2089 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 2.6e-52 210.3 326 35.9
Haze_17689 Corylus avellana HOM05D005037 ORTHO05D006274 2.6e-52 210.3 328 35.4
FvH4_2g15010 Fragaria vesca HOM05D005037 ORTHO05D006274 2.6e-52 210.3 329 37.1
ECA233G3664 Erigeron canadensis HOM05D005037 ORTHO05D006274 3.4e-52 209.9 323 37.2
ClCG08G002740 Citrullus lanatus HOM05D005037 ORTHO05D006274 4.4e-52 209.5 329 36.2
Solyc04g064570.3 Solanum lycopersicum HOM05D005037 ORTHO05D006274 5.8e-52 209.1 326 41.7
Sopen04g026520 Solanum pennellii HOM05D005037 ORTHO05D006274 5.8e-52 209.1 326 41.7
Cfa018383 Carpinus fangiana HOM05D005037 ORTHO05D006274 7.6e-52 208.8 324 35.8
arahy.Tifrunner.gnm1.ann1.E7XDIB Arachis hypogaea HOM05D005037 ORTHO05D006274 1.3e-51 208.0 327 34.9
arahy.Tifrunner.gnm1.ann1.HCD3KF Arachis hypogaea HOM05D005037 ORTHO05D006274 1.7e-51 207.6 327 34.6
Sed0001170 Sechium edule HOM05D005037 ORTHO05D006274 2.2e-51 207.2 331 35.3
PSO675G6067 Papaver somniferum HOM05D005037 ORTHO05D006274 2.9e-51 206.8 329 35.6
Lalb_Chr21g0311851 Lupinus albus HOM05D005037 ORTHO05D006274 3.8e-51 206.5 327 35.8
Prupe.8G016400 Prunus persica HOM05D005037 ORTHO05D006274 1.1e-50 204.9 327 35.2
CiPaw.16G018700 Carya illinoinensis HOM05D005037 ORTHO05D006274 3.2e-50 203.4 326 36.8
Ca_25512_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 3.2e-50 203.4 327 34.9
Ca_30116_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 3.2e-50 203.4 327 34.9
FAN27G1276 Fragaria x ananassa HOM05D005037 ORTHO05D006274 4.2e-50 203.0 323 35.9
VMungo0540G1405 Vigna mungo HOM05D005037 ORTHO05D006274 4.2e-50 203.0 323 35.3
HPP92_020501 Vanilla planifolia HOM05D005037 ORTHO05D006274 5.4e-50 202.6 330 37.3
SHI09275 Sapria himalayana HOM05D005037 ORTHO05D006274 7.1e-50 202.2 329 37.4
TPR.G31447 Trifolium pratense HOM05D005037 ORTHO05D006274 1.2e-49 201.4 329 35.3
Medtr6g085170 Medicago truncatula HOM05D005037 ORTHO05D006274 2.1e-49 200.7 329 35.6
QL09p029039 Quercus lobata HOM05D005037 ORTHO05D006274 6.0e-49 199.1 328 34.8
Phvul.006G102500 Phaseolus vulgaris HOM05D005037 ORTHO05D006274 1.3e-48 198.0 323 35.0
Psat1g039480 Pisum sativum HOM05D005037 ORTHO05D006274 1.7e-48 197.6 327 34.3
Os08g0107500 Oryza sativa ssp. japonica HOM05D005037 ORTHO05D006274 3.9e-48 196.4 326 33.7
Glyma.14G119400 Glycine max HOM05D005037 ORTHO05D006274 9.6e-47 191.8 323 38.7
Oeu001556.2 Olea europaea HOM05D005037 ORTHO05D006274 2.1e-46 190.7 367 33.0
Zm00001eb260230 Zea mays HOM05D005037 ORTHO05D006274 3.6e-46 189.9 326 34.0
CSS0023189 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 6.9e-45 185.7 329 35.0
Glyma.11G142700 Glycine max HOM05D005037 ORTHO05D006274 6.9e-45 185.7 323 39.0
Lj4g0018852 Lotus japonicus HOM05D005037 ORTHO05D006274 2.6e-44 183.7 327 31.8
Lj1g0018953 Lotus japonicus HOM05D005037 ORTHO05D006274 9.9e-44 181.8 327 32.1
Lj4A690T47 Lonicera japonica HOM05D005037 ORTHO05D006274 2.1e-41 174.1 179 47.5
unitig_747.g21501 Utricularia gibba HOM05D005037 ORTHO05D006274 2.7e-41 173.7 170 47.1
ECA234G0804 Erigeron canadensis HOM05D005037 ORTHO05D006274 1.0e-40 171.8 326 32.8
HPP92_020498 Vanilla planifolia HOM05D005037 ORTHO05D006274 3.1e-37 160.2 177 47.5
Mapoly0003s0227 Marchantia polymorpha HOM05D005037 ORTHO05D006274 9.3e-34 148.7 262 35.5
Cre01.g017500 Chlamydomonas reinhardtii HOM05D005037 ORTHO05D006274 3.3e-31 140.2 246 37.8
Dinv41137 Davidia involucrata HOM05D005037 ORTHO05D006274 4.8e-30 136.3 319 30.7
PRCOL_00006527 Prasinoderma coloniale HOM05D005037 ORTHO05D006274 5.8e-28 129.4 336 31.0
COL.COLO4_33811 Corchorus olitorius HOM05D005037 ORTHO05D006274 1.3e-27 128.3 257 30.7
SMO272G0010 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 2.5e-26 124.0 89 66.3
FAN20G2613 Fragaria x ananassa HOM05D005037 ORTHO05D006274 4.6e-25 119.8 105 55.2
PSO017G3306 Papaver somniferum HOM05D005037 ORTHO05D006274 4.6e-25 119.8 189 36.0
MD05G1011500 Malus domestica HOM05D005037 ORTHO05D006274 6.7e-24 115.9 254 28.0
CSS0016864 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 2.5e-23 114.0 144 42.4
PSO729G0215 Papaver somniferum HOM05D005037 ORTHO05D006274 1.1e-21 108.6 160 36.9
MCO07G375 Micromonas commoda HOM05D005037 ORTHO05D006274 1.3e-19 101.7 91 54.9
C06p00420 Brassica napus HOM05D005037 ORTHO05D006274 5.0e-19 99.8 105 48.6
C06p00390 Brassica napus HOM05D005037 ORTHO05D006274 1.1e-18 98.6 105 47.6
CSS0012113 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.9e-18 97.8 97 48.5
FAN15G0656 Fragaria x ananassa HOM05D005037 ORTHO05D006274 1.6e-17 94.7 72 59.7
CSS0029081 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 4.6e-17 93.2 97 47.4
Aa31LG6G9600 Aethionema arabicum HOM05D005037 ORTHO05D006274 9.7e-15 85.5 198 27.8
BraA01t00001Z Brassica rapa HOM05D005037 ORTHO05D013118 1.8e-08 64.7 56 48.2
BraA06t27783Z Brassica rapa HOM05D005037 ORTHO05D013118 1.8e-08 64.7 56 48.2
Actinidia15170 Actinidia chinensis HOM05D005037 ORTHO05D006274 1.1e-07 62.0 88 29.5


User provided reference genes

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