Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g41115 Chara braunii HOM05D001061 ORTHO05D014706 1.1e-70 270.0 145 100.0
Pp3c20_1350 Physcomitrium patens HOM05D001061 ORTHO05D006808 1.2e-13 80.5 66 63.6
Sabra14G0090200 Salix brachista HOM05D001061 ORTHO05D006808 1.3e-12 77.0 126 41.3
Nn3g21675 Nelumbo nucifera HOM05D001061 ORTHO05D006808 5.0e-12 75.1 62 61.3
Psat3g020000 Pisum sativum HOM05D001061 ORTHO05D006808 5.0e-12 75.1 62 61.3
CANSAT25G3364 Cannabis sativa HOM05D001061 ORTHO05D006808 8.5e-12 74.3 62 62.9
COL.COLO4_23240 Corchorus olitorius HOM05D001061 ORTHO05D006808 8.5e-12 74.3 103 49.5
Mapoly0042s0086 Marchantia polymorpha HOM05D001061 ORTHO05D006808 8.5e-12 74.3 76 56.6
FvH4_5g39410 Fragaria vesca HOM05D001061 ORTHO05D006808 1.1e-11 73.9 117 41.9
FAN08G2326 Fragaria x ananassa HOM05D001061 ORTHO05D006808 1.1e-11 73.9 117 41.9
Manes.01G227200 Manihot esculenta HOM05D001061 ORTHO05D006808 1.1e-11 73.9 62 59.7
Sc17g0000490 Simmondsia chinensis HOM05D001061 ORTHO05D006808 1.1e-11 73.9 138 37.0
TPR.G4121 Trifolium pratense HOM05D001061 ORTHO05D006808 1.1e-11 73.9 62 61.3
arahy.Tifrunner.gnm1.ann1.LRQA6N Arachis hypogaea HOM05D001061 ORTHO05D006808 1.4e-11 73.6 94 47.9
arahy.Tifrunner.gnm1.ann1.X1CI0G Arachis hypogaea HOM05D001061 ORTHO05D006808 1.4e-11 73.6 94 47.9
Lalb_Chr18g0049161 Lupinus albus HOM05D001061 ORTHO05D006808 1.4e-11 73.6 62 61.3
Potri.014G121701 Populus trichocarpa HOM05D001061 ORTHO05D006808 1.4e-11 73.6 126 40.5
SEGI_10033 Sequoiadendron giganteum HOM05D001061 ORTHO05D006808 1.4e-11 73.6 63 58.7
EL10As5g23522 Beta vulgaris HOM05D001061 ORTHO05D006808 1.9e-11 73.2 62 61.3
CAN.G777.8 Capsicum annuum HOM05D001061 ORTHO05D006808 1.9e-11 73.2 61 60.7
Medtr7g109470 Medicago truncatula HOM05D001061 ORTHO05D006808 1.9e-11 73.2 62 59.7
CiPaw.07G116800 Carya illinoinensis HOM05D001061 ORTHO05D006808 2.5e-11 72.8 61 60.7
FAN13G0115 Fragaria x ananassa HOM05D001061 ORTHO05D006808 2.5e-11 72.8 62 59.7
QL12p020098 Quercus lobata HOM05D001061 ORTHO05D006808 2.5e-11 72.8 45 75.6
TWI18G0793 Tripterygium wilfordii HOM05D001061 ORTHO05D006808 2.5e-11 72.8 62 61.3
MSTRG.21683 Avicennia marina HOM05D001061 ORTHO05D006808 4.2e-11 72.0 105 42.9
Ciclev10018525m.g Citrus clementina HOM05D001061 ORTHO05D006808 4.2e-11 72.0 121 43.8
Prupe.8G271300 Prunus persica HOM05D001061 ORTHO05D006808 4.2e-11 72.0 62 59.7
PGR044G1584 Punica granatum HOM05D001061 ORTHO05D006808 4.2e-11 72.0 105 45.7
PSO761G0517 Papaver somniferum HOM05D001061 ORTHO05D006808 5.5e-11 71.6 61 62.3
Aa31LG5G1700 Aethionema arabicum HOM05D001061 ORTHO05D006808 7.2e-11 71.2 46 71.7
TAR365G1172 Trochodendron aralioides HOM05D001061 ORTHO05D006808 7.2e-11 71.2 82 50.0
Aqoxy2G02780 Aquilegia oxysepala HOM05D001061 ORTHO05D006808 9.4e-11 70.9 61 57.4
Lalb_Chr15g0078211 Lupinus albus HOM05D001061 ORTHO05D006808 9.4e-11 70.9 62 61.3
RcHm_v2.0_Chr7g0241701 Rosa chinensis HOM05D001061 ORTHO05D006808 9.4e-11 70.9 62 59.7
Solyc01g079520.3 Solanum lycopersicum HOM05D001061 ORTHO05D006808 9.4e-11 70.9 128 39.1
Nitab4.5_0008811g0030 Nicotiana tabacum HOM05D001061 ORTHO05D006808 1.2e-10 70.5 71 56.3
PSO210G6116 Papaver somniferum HOM05D001061 ORTHO05D006808 1.2e-10 70.5 115 42.6
Glyma.19G216000 Glycine max HOM05D001061 ORTHO05D006808 1.6e-10 70.1 62 58.1
SGA_v2.0_scaffold334G49065 Striga asiatica HOM05D001061 ORTHO05D006808 1.6e-10 70.1 85 47.1
ATR0693G191 Amborella trichopoda HOM05D001061 ORTHO05D006808 2.1e-10 69.7 63 58.7
Ca_09207_v3 Cicer arietinum L. HOM05D001061 ORTHO05D006808 2.1e-10 69.7 139 36.0
ClCG09G005140 Citrullus lanatus HOM05D001061 ORTHO05D006808 2.1e-10 69.7 62 58.1
MELO3C015928.2 Cucumis melo HOM05D001061 ORTHO05D006808 2.1e-10 69.7 62 58.1
Oeu038017.1 Olea europaea HOM05D001061 ORTHO05D006808 2.1e-10 69.7 99 42.4
THA.LOC104825941 Tarenaya hassleriana HOM05D001061 ORTHO05D006808 2.1e-10 69.7 46 71.7
CSS0018335 Camellia sinensis var. sinensis HOM05D001061 ORTHO05D006808 2.7e-10 69.3 117 36.8
Carub.0006s3516 Capsella rubella HOM05D001061 ORTHO05D006808 2.7e-10 69.3 46 71.7
Thhalv10028364m.g Eutrema salsugineum HOM05D001061 ORTHO05D006808 2.7e-10 69.3 46 71.7
Lj1g0020273 Lotus japonicus HOM05D001061 ORTHO05D006808 2.7e-10 69.3 62 58.1
Peaxi162Scf00691g00115 Petunia axillaris HOM05D001061 ORTHO05D006808 2.7e-10 69.3 61 57.4
Hund09627 Selenicereus undatus HOM05D001061 ORTHO05D006808 2.7e-10 69.3 62 59.7
Sopen01g031290 Solanum pennellii HOM05D001061 ORTHO05D006808 2.7e-10 69.3 112 39.3
Actinidia21002 Actinidia chinensis HOM05D001061 ORTHO05D006808 3.6e-10 68.9 61 57.4
Actinidia25844 Actinidia chinensis HOM05D001061 ORTHO05D006808 3.6e-10 68.9 61 57.4
Duzib138G0299 Durio zibethinus HOM05D001061 ORTHO05D006808 3.6e-10 68.9 62 56.5
Sp6g01950 Schrenkiella parvula HOM05D001061 ORTHO05D006808 3.6e-10 68.9 61 59.0
Thecc.01G312500 Theobroma cacao HOM05D001061 ORTHO05D006808 3.6e-10 68.9 62 59.7
GSVIVG01028112001 Vitis vinifera HOM05D001061 ORTHO05D006808 3.6e-10 68.9 86 48.8
Ah.11g049290 Amaranthus hybridus HOM05D001061 ORTHO05D006808 4.6e-10 68.6 104 43.3
BraA03t12306Z Brassica rapa HOM05D001061 ORTHO05D006808 4.6e-10 68.6 61 57.4
AUR62024662 Chenopodium quinoa HOM05D001061 ORTHO05D006808 4.6e-10 68.6 103 42.7
CsaV3_7G029930 Cucumis sativus L. HOM05D001061 ORTHO05D006808 4.6e-10 68.6 61 57.4
Eucgr.K03542 Eucalyptus grandis HOM05D001061 ORTHO05D006808 4.6e-10 68.6 61 55.7
Gohir.A07G128100 Gossypium hirsutum HOM05D001061 ORTHO05D006808 4.6e-10 68.6 62 56.5
HPP92_026958 Vanilla planifolia HOM05D001061 ORTHO05D006808 4.6e-10 68.6 61 59.0
Atru.chr5.1015 Acer truncatum HOM05D001061 ORTHO05D014706 6.1e-10 68.2 62 56.5
AT4G02070 Arabidopsis thaliana HOM05D001061 ORTHO05D006808 6.1e-10 68.2 46 69.6
BcaB01g02414 Brassica carinata HOM05D001061 ORTHO05D006808 6.1e-10 68.2 61 57.4
BcaC01g06778 Brassica carinata HOM05D001061 ORTHO05D006808 6.1e-10 68.2 61 57.4
A03p31260 Brassica napus HOM05D001061 ORTHO05D006808 6.1e-10 68.2 61 57.4
C03p38100 Brassica napus HOM05D001061 ORTHO05D006808 6.1e-10 68.2 61 57.4
BolC3t16097H Brassica oleracea HOM05D001061 ORTHO05D006808 6.1e-10 68.2 61 57.4
Cpa.g.sc50.141 Carica papaya HOM05D001061 ORTHO05D006808 6.1e-10 68.2 114 43.0
HanXRQChr15g0464141 Helianthus annuus HOM05D001061 ORTHO05D006808 6.1e-10 68.2 61 57.4
Phvul.001G212500 Phaseolus vulgaris HOM05D001061 ORTHO05D006808 6.1e-10 68.2 62 56.5
vmacro15113 Vaccinium macrocarpon HOM05D001061 ORTHO05D006808 6.1e-10 68.2 118 37.3
CARHR249610 Cardamine hirsuta HOM05D001061 ORTHO05D006808 7.9e-10 67.8 45 71.1
Cfa005809 Carpinus fangiana HOM05D001061 ORTHO05D006808 7.9e-10 67.8 61 55.7
Haze_05032 Corylus avellana HOM05D001061 ORTHO05D006808 7.9e-10 67.8 61 55.7
MD03G1296000 Malus domestica HOM05D001061 ORTHO05D006808 7.9e-10 67.8 116 38.8
AagrBONN_evm.TU.Sc2ySwM_228.348 Anthoceros agrestis HOM05D001061 ORTHO05D006808 1.0e-09 67.4 66 56.1
AUR62011818 Chenopodium quinoa HOM05D001061 ORTHO05D006808 1.0e-09 67.4 103 42.7
Gorai.005G190900 Gossypium raimondii HOM05D001061 ORTHO05D014706 1.0e-09 67.4 62 56.5
Nitab4.5_0001301g0050 Nicotiana tabacum HOM05D001061 ORTHO05D006808 1.0e-09 67.4 71 53.5
VMungo1383G2073 Vigna mungo HOM05D001061 ORTHO05D006808 1.0e-09 67.4 62 54.8
CSS0047021 Camellia sinensis var. sinensis HOM05D001061 ORTHO05D006808 1.4e-09 67.0 133 34.6
Migut.D00086 Erythranthe guttata HOM05D001061 ORTHO05D006808 1.4e-09 67.0 61 55.7
Gohir.D07G132500 Gossypium hirsutum HOM05D001061 ORTHO05D006808 1.4e-09 67.0 100 46.0
Gorai.001G187300 Gossypium raimondii HOM05D001061 ORTHO05D014706 1.4e-09 67.0 106 45.3
Gorai.009G340600 Gossypium raimondii HOM05D001061 ORTHO05D014706 1.4e-09 67.0 62 56.5
ECA236G3964 Erigeron canadensis HOM05D001061 ORTHO05D006808 1.8e-09 66.6 68 51.5
SalBow3G2997 Salvia bowleyana HOM05D001061 ORTHO05D006808 1.8e-09 66.6 45 68.9
AL6G51170 Arabidopsis lyrata HOM05D001061 ORTHO05D006808 2.3e-09 66.2 62 56.5
Lj1A18T23 Lonicera japonica HOM05D001061 ORTHO05D014706 2.3e-09 66.2 61 55.7
Gorai.001G143900 Gossypium raimondii HOM05D001061 ORTHO05D006808 3.0e-09 65.9 100 45.0
unitig_85.g27181 Utricularia gibba HOM05D001061 ORTHO05D006808 3.0e-09 65.9 101 41.6
CDE02G2952 Ceratophyllum demersum HOM05D001061 ORTHO05D006808 3.9e-09 65.5 100 41.0
Sed0020923 Sechium edule HOM05D001061 ORTHO05D006808 3.9e-09 65.5 138 35.5
Gohir.D13G158800 Gossypium hirsutum HOM05D001061 ORTHO05D014706 5.1e-09 65.1 100 44.0
Zm00001eb312280 Zea mays HOM05D001061 ORTHO05D006808 5.1e-09 65.1 75 48.0
DCAR_018314 Daucus carota HOM05D001061 ORTHO05D006808 6.7e-09 64.7 61 54.1
Cc01_g21360 Coffea canephora HOM05D001061 ORTHO05D006808 1.1e-08 63.9 61 50.8
Lsat_1_v5_gn_8_165800 Lactuca sativa HOM05D001061 ORTHO05D006808 1.5e-08 63.5 67 53.7
BolC1t03872H Brassica oleracea HOM05D001061 ORTHO05D007103 4.3e-08 62.0 66 45.5
BraA01t03215Z Brassica rapa HOM05D001061 ORTHO05D007103 4.3e-08 62.0 66 45.5
Gorai.013G179500 Gossypium raimondii HOM05D001061 ORTHO05D014706 4.3e-08 62.0 100 43.0
Os01g0180600 Oryza sativa ssp. japonica HOM05D001061 ORTHO05D007103 5.7e-08 61.6 63 47.6
BcaB04g20387 Brassica carinata HOM05D001061 ORTHO05D007103 7.4e-08 61.2 66 45.5
A01p30870 Brassica napus HOM05D001061 ORTHO05D007103 7.4e-08 61.2 66 45.5
MCO04G338 Micromonas commoda HOM05D001061 ORTHO05D006808 7.4e-08 61.2 80 42.5
PRCOL_00003897 Prasinoderma coloniale HOM05D001061 ORTHO05D006808 7.4e-08 61.2 67 52.2
Zm00001eb122180 Zea mays HOM05D001061 ORTHO05D007103 7.4e-08 61.2 63 47.6
CiPaw.03G233800 Carya illinoinensis HOM05D001061 ORTHO05D007103 9.7e-08 60.8 64 51.6
C01p39230 Brassica napus HOM05D001061 ORTHO05D007103 1.3e-07 60.5 66 45.5
Cre05.g235750 Chlamydomonas reinhardtii HOM05D001061 ORTHO05D006808 1.7e-07 60.1 64 53.1
HanXRQChr09g0239571 Helianthus annuus HOM05D001061 ORTHO05D007103 1.7e-07 60.1 115 37.4
Manes.03G019100 Manihot esculenta HOM05D001061 ORTHO05D007103 2.8e-07 59.3 64 53.1
PGR102G2005 Punica granatum HOM05D001061 ORTHO05D007103 2.8e-07 59.3 140 32.1
Thhalv10027266m.g Eutrema salsugineum HOM05D001061 ORTHO05D006808 4.8e-07 58.5 56 57.1
RcHm_v2.0_Chr2g0090761 Rosa chinensis HOM05D001061 ORTHO05D007103 4.8e-07 58.5 64 50.0
Sp3g22270 Schrenkiella parvula HOM05D001061 ORTHO05D007103 4.8e-07 58.5 66 43.9
Eucgr.C03861 Eucalyptus grandis HOM05D001061 ORTHO05D007103 8.2e-07 57.8 60 51.7
THA.LOC104804581 Tarenaya hassleriana HOM05D001061 ORTHO05D007103 8.2e-07 57.8 59 50.8
AL3G39960 Arabidopsis lyrata HOM05D001061 ORTHO05D007103 1.1e-06 57.4 66 42.4
Peaxi162Scf00560g00212 Petunia axillaris HOM05D001061 ORTHO05D007103 1.1e-06 57.4 54 48.1
CSS0031012 Camellia sinensis var. sinensis HOM05D001061 ORTHO05D007103 1.4e-06 57.0 60 50.0
CSS0031111 Camellia sinensis var. sinensis HOM05D001061 ORTHO05D007103 1.4e-06 57.0 60 50.0
Carub.0003s2480 Capsella rubella HOM05D001061 ORTHO05D007103 1.4e-06 57.0 66 43.9
Psat1g040600 Pisum sativum HOM05D001061 ORTHO05D007103 1.4e-06 57.0 61 45.9
SMO116G0402 Selaginella moellendorffii HOM05D001061 ORTHO05D006808 1.8e-06 56.6 44 61.4
Hund09195 Selenicereus undatus HOM05D001061 ORTHO05D007103 1.8e-06 56.6 61 47.5
Nitab4.5_0001641g0030 Nicotiana tabacum HOM05D001061 ORTHO05D007103 2.4e-06 56.2 54 50.0
Nitab4.5_0004944g0020 Nicotiana tabacum HOM05D001061 ORTHO05D007103 2.4e-06 56.2 54 50.0
PSO675G8279 Papaver somniferum HOM05D001061 ORTHO05D006729 2.4e-06 56.2 62 53.2
Potri.006G156314 Populus trichocarpa HOM05D001061 ORTHO05D007103 2.4e-06 56.2 60 53.3
Potri.006G159200 Populus trichocarpa HOM05D001061 ORTHO05D007103 2.4e-06 56.2 60 53.3
Sabra06G0125000 Salix brachista HOM05D001061 ORTHO05D007103 2.4e-06 56.2 64 51.6
CAN.G343.6 Capsicum annuum HOM05D001061 ORTHO05D007103 3.1e-06 55.8 110 36.4
CARHR100600 Cardamine hirsuta HOM05D001061 ORTHO05D007103 3.1e-06 55.8 66 40.9
MD15G1187500 Malus domestica HOM05D001061 ORTHO05D007103 3.1e-06 55.8 64 48.4
PSO782G4005 Papaver somniferum HOM05D001061 ORTHO05D007103 3.1e-06 55.8 60 50.0
TPR.G30580 Trifolium pratense HOM05D001061 ORTHO05D007103 3.1e-06 55.8 61 45.9
TAR624G1442 Trochodendron aralioides HOM05D001061 ORTHO05D007103 3.1e-06 55.8 60 48.3
Cfa003275 Carpinus fangiana HOM05D001061 ORTHO05D007103 4.1e-06 55.5 70 45.7
Ca_25521_v3 Cicer arietinum L. HOM05D000528 ORTHO05D001569 4.1e-06 55.5 61 45.9
Ciclev10007291m.g Citrus clementina HOM05D001061 ORTHO05D007103 4.1e-06 55.5 66 45.5
Lj2g0015753 Lotus japonicus HOM05D001061 ORTHO05D007103 4.1e-06 55.5 61 45.9
Medtr6g086270 Medicago truncatula HOM05D001061 ORTHO05D007103 4.1e-06 55.5 61 45.9
Rhsim01G0290300 Rhododendron simsii HOM05D001061 ORTHO05D006808 4.1e-06 55.5 99 37.4
PSO063G0257 Papaver somniferum HOM05D001061 ORTHO05D007103 5.3e-06 55.1 66 40.9
Prupe.7G228900 Prunus persica HOM05D001061 ORTHO05D007103 5.3e-06 55.1 64 46.9
QL02p085695 Quercus lobata HOM05D001061 ORTHO05D007103 5.3e-06 55.1 54 50.0
Solyc07g018350.2 Solanum lycopersicum HOM05D001061 ORTHO05D007103 5.3e-06 55.1 66 42.4
Sopen07g007490 Solanum pennellii HOM05D001061 ORTHO05D007103 5.3e-06 55.1 66 42.4
Aa31LG8G11230 Aethionema arabicum HOM05D001061 ORTHO05D007103 9.1e-06 54.3 61 39.3
Cc06_g09530 Coffea canephora HOM05D001061 ORTHO05D007103 9.1e-06 54.3 57 47.4
ECA240G3988 Erigeron canadensis HOM05D001061 ORTHO05D007103 9.1e-06 54.3 65 43.1
Thhalv10002887m.g Eutrema salsugineum HOM05D001061 ORTHO05D007103 9.1e-06 54.3 67 43.3
FvH4_1g05130 Fragaria vesca HOM05D001061 ORTHO05D007103 9.1e-06 54.3 64 48.4
FAN23G0366 Fragaria x ananassa HOM05D001061 ORTHO05D007103 9.1e-06 54.3 64 48.4
FAN26G1132 Fragaria x ananassa HOM05D001061 ORTHO05D007103 9.1e-06 54.3 64 48.4
FAN26G2007 Fragaria x ananassa HOM05D001061 ORTHO05D007103 9.1e-06 54.3 64 48.4
Gorai.010G069400 Gossypium raimondii HOM05D001061 ORTHO05D007103 9.1e-06 54.3 54 50.0
Phvul.004G162000 Phaseolus vulgaris HOM05D001061 ORTHO05D007103 9.1e-06 54.3 61 42.6


User provided reference genes

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