Gene: Solyc07g018350.2

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc07g018350.2
  • Transcript Identifier Solyc07g018350.2.1
  • Gene Type Coding gene
  • Location SL4.0ch07 : 10462686-10481320 : positive

Gene Family Information

  • ID HOM05D001061
  • #Genes/#Species 575/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc07g018350.2.1
  • uniprot A0A3Q7H950
  • gene_id Solyc07g018350

Descriptions

  • Description DNA mismatch repair protein MutS (AHRD V3.3 *** A0A200PNX5_9MAGN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000710
IBA
GOA Databasemeiotic mismatch repair
GO:0006298
IBA
IEA
GOA Databasemismatch repair
GO:0006298
IEA
InterPromismatch repair
GO:0006290
IBA
GOA Databasepyrimidine dimer repair
GO:0045910
IBA
GOA Databasenegative regulation of DNA recombination
GO:0043570
IBA
GOA Databasemaintenance of DNA repeat elements
GO:0036297
IBA
GOA Databaseinterstrand cross-link repair
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G24495
GO:0032143
IBA
GOA Databasesingle thymine insertion binding
GO:0032357
IBA
GOA Databaseoxidized purine DNA binding
GO:0032405
IBA
GOA DatabaseMutLalpha complex binding
GO:0008094
IBA
GOA DatabaseATPase, acting on DNA
GO:0030983
IBA
IEA
GOA Databasemismatched DNA binding
GO:0030983
IEA
InterPromismatched DNA binding
GO:0000400
IBA
GOA Databasefour-way junction DNA binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0003677
IEA
GOA DatabaseDNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0032301
IBA
GOA DatabaseMutSalpha complex
GO:0032300
IBA
GOA Databasemismatch repair complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR007696 DNA mismatch repair protein MutS, core
IPR000432 DNA mismatch repair protein MutS, C-terminal
IPR017261 DNA mismatch repair protein MutS/MSH
IPR016151 DNA mismatch repair protein MutS, N-terminal
IPR045076 DNA mismatch repair MutS family
IPR036678 MutS, connector domain superfamily
IPR036187 DNA mismatch repair protein MutS, core domain superfamily
IPR007860 DNA mismatch repair protein MutS, connector domain
Mapman id Description
14.7.1.4 DNA damage response.mismatch repair (MMR).MSH2-x mismatch repair heterodimer components.component MSH7