Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g4015 Chara braunii HOM05D005600 ORTHO05D006682 0.0e+00 1947.2 1226 100.0
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 9.1e-224 781.6 970 45.8
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 1.0e-219 768.1 966 45.4
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 1.4e-219 767.7 971 44.7
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 2.6e-210 736.9 958 42.9
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 6.3e-209 732.3 957 43.2
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 9.1e-208 728.4 958 43.0
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 3.2e-205 719.9 954 41.8
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 3.2e-205 719.9 963 42.3
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 7.2e-205 718.8 963 42.3
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 1.6e-204 717.6 970 42.6
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 2.7e-204 716.8 964 41.5
Actinidia35417 Actinidia chinensis HOM05D005600 ORTHO05D006682 4.7e-204 716.1 964 41.8
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 4.7e-204 716.1 959 42.1
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 2.3e-203 713.8 963 42.2
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 7.5e-202 708.8 954 44.0
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 9.8e-202 708.4 954 41.8
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 2.2e-201 707.2 969 40.9
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 2.2e-201 707.2 954 43.9
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 2.2e-201 707.2 968 41.4
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 2.8e-201 706.8 954 44.1
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 3.7e-201 706.4 954 41.4
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 4.8e-201 706.1 953 40.8
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 1.1e-200 704.9 964 41.2
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 3.1e-200 703.4 967 41.1
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 4.1e-200 703.0 964 41.5
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 4.1e-200 703.0 956 42.3
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 9.1e-200 701.8 955 41.5
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 9.1e-200 701.8 956 41.4
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 1.6e-199 701.0 956 41.1
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 2.0e-199 700.7 958 43.7
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 2.0e-199 700.7 962 41.9
TWI39G0768 Tripterygium wilfordii HOM05D005600 ORTHO05D006682 7.7e-199 698.7 954 44.2
Atru.chr10.100 Acer truncatum HOM05D005600 ORTHO05D006682 2.9e-198 696.8 957 41.4
Atru.chr10.118 Acer truncatum HOM05D005600 ORTHO05D006682 2.9e-198 696.8 957 41.4
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 1.1e-197 694.9 959 42.5
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 2.5e-197 693.7 967 40.3
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 4.2e-197 693.0 957 41.0
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 2.8e-196 690.3 959 42.5
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 2.8e-196 690.3 963 40.5
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 6.1e-196 689.1 917 42.3
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 6.1e-196 689.1 963 40.4
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 8.0e-196 688.7 960 41.8
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 1.0e-195 688.3 958 41.8
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 1.0e-195 688.3 963 40.5
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 1.0e-195 688.3 954 42.5
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 1.4e-195 688.0 957 41.3
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 1.8e-195 687.6 961 40.8
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 1.5e-194 684.5 956 41.3
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 3.4e-194 683.3 958 41.5
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 5.7e-194 682.6 988 40.0
Manes.06G161000 Manihot esculenta HOM05D005600 ORTHO05D006682 5.7e-194 682.6 964 40.8
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 9.8e-194 681.8 958 41.3
Lsat_1_v5_gn_7_110720 Lactuca sativa HOM05D005600 ORTHO05D006682 9.8e-194 681.8 954 40.4
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 1.7e-193 681.0 958 41.3
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 1.7e-193 681.0 958 41.3
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 3.7e-193 679.9 958 41.4
DCAR_009654 Daucus carota HOM05D005600 ORTHO05D006682 6.3e-193 679.1 972 42.3
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 6.3e-193 679.1 959 43.1
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 8.3e-193 678.7 955 41.7
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 1.8e-192 677.6 952 40.0
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 2.4e-192 677.2 958 41.1
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 4.1e-192 676.4 953 43.2
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 7.0e-192 675.6 931 41.7
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 7.0e-192 675.6 1011 40.8
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 2.7e-191 673.7 954 40.3
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 5.9e-191 672.5 958 40.8
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 7.8e-191 672.2 971 40.1
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 7.8e-191 672.2 959 41.1
Nn3g21398 Nelumbo nucifera HOM05D005600 ORTHO05D006682 7.8e-191 672.2 957 41.8
Cpa.g.sc84.9 Carica papaya HOM05D005600 ORTHO05D006682 1.7e-190 671.0 965 40.3
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 1.7e-190 671.0 971 40.7
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 1.1e-189 668.3 966 39.8
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 1.9e-189 667.5 961 40.2
SMO236G0107 Selaginella moellendorffii HOM05D005600 ORTHO05D006682 5.6e-189 666.0 961 40.9
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 5.6e-189 666.0 1030 38.6
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 1.2e-188 664.8 960 39.7
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 1.2e-188 664.8 956 40.6
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 1.2e-188 664.8 957 40.5
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 1.8e-187 661.0 956 41.9
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 1.8e-187 661.0 961 40.0
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 2.3e-187 660.6 956 41.6
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 2.3e-187 660.6 971 40.0
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 4.0e-187 659.8 979 41.8
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 2.6e-186 657.1 937 39.9
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 7.5e-186 655.6 957 39.9
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 1.3e-185 654.8 963 40.1
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 4.9e-185 652.9 1005 39.1
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 2.0e-183 647.5 972 39.3
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 1.0e-182 645.2 871 41.7
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 5.6e-181 639.4 722 46.4
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 3.6e-180 636.7 958 39.4
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 8.0e-180 635.6 982 38.9
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 2.3e-179 634.0 1053 37.6
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 9.8e-178 628.6 1100 36.1
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 1.2e-167 595.1 989 37.3
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 6.0e-167 592.8 941 38.4
Hma1.2p1_0151F.1_g067180 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 3.9e-166 590.1 790 42.5
MD11G1186900 Malus domestica HOM05D005600 ORTHO05D006682 9.3e-152 542.3 739 42.8
Ca_08130_v3 Cicer arietinum L. HOM05D005600 ORTHO05D006682 6.6e-150 536.2 880 37.4
Sabra09G0035700 Salix brachista HOM05D005600 ORTHO05D006682 8.7e-150 535.8 1009 37.5
COL.COLO4_36487 Corchorus olitorius HOM05D005600 ORTHO05D006682 3.9e-142 510.4 838 39.4
ClCG03G012970 Citrullus lanatus HOM05D005600 ORTHO05D006682 4.2e-136 490.3 717 43.5
HPP92_006936 Vanilla planifolia HOM05D005600 ORTHO05D006682 1.8e-126 458.4 653 42.1
Lj2A14G43 Lonicera japonica HOM05D005600 ORTHO05D006682 1.0e-105 389.4 682 36.4
Eucgr.B03713 Eucalyptus grandis HOM05D005600 ORTHO05D006682 5.0e-105 387.1 588 41.3
SHI27472 Sapria himalayana HOM05D005600 ORTHO05D006682 5.0e-105 387.1 486 41.4
Zm00001eb016670 Zea mays HOM05D005600 ORTHO05D006682 8.5e-105 386.3 598 40.5
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 4.2e-104 384.0 384 47.7
CDE01G0031 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 1.5e-93 349.0 971 31.0
Nitab4.5_0008957g0040 Nicotiana tabacum HOM05D005600 ORTHO05D006682 5.5e-88 330.5 581 36.8
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 2.8e-79 301.6 939 26.9
SEGI_34765 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 5.7e-77 293.9 455 38.7
Eucgr.B03714 Eucalyptus grandis HOM05D005600 ORTHO05D006682 2.0e-74 285.4 330 41.5
VMungo1383G0719 Vigna mungo HOM05D005600 ORTHO05D006682 4.6e-74 284.3 534 35.6
CDE10G0769 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 4.3e-72 277.7 160 75.6
PRCOL_00004432 Prasinoderma coloniale HOM05D005600 ORTHO05D006682 1.8e-62 245.7 712 28.5
BcaC04g23081 Brassica carinata HOM05D005600 ORTHO05D006682 3.3e-56 224.9 691 28.1
MCO11G503 Micromonas commoda HOM05D005600 ORTHO05D006682 4.0e-54 218.0 524 30.2
ClCG03G012990 Citrullus lanatus HOM05D005600 ORTHO05D006682 1.9e-43 182.6 215 41.4
Cre12.g524100 Chlamydomonas reinhardtii HOM05D005600 ORTHO05D006682 2.1e-42 179.1 558 28.3
BolC9t54127H Brassica oleracea HOM05D005600 ORTHO05D006682 2.2e-28 132.5 392 31.4
SEGI_17739 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.3e-25 123.2 121 48.8
Cfa024653 Carpinus fangiana HOM05D005600 ORTHO05D006682 9.6e-24 117.1 722 21.1
Lj2A14T50 Lonicera japonica HOM05D005600 ORTHO05D006682 2.7e-18 99.0 217 29.0
SEGI_12823 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.3e-17 96.7 94 52.1
Atru.chr3.1844 Acer truncatum HOM05D005600 ORTHO05D006682 1.7e-12 79.7 92 38.0
VMungo1383G0187 Vigna mungo HOM05D005600 ORTHO05D006682 5.0e-12 78.2 42 69.0
SEGI_14354 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 2.2e-07 62.8 57 49.1
VMungo1383G3426 Vigna mungo HOM05D000002 ORTHO05D000001 2.2e-07 62.8 86 33.7
A09p10400 Brassica napus HOM05D005600 ORTHO05D006682 9.0e-06 57.4 59 50.8
Hund17892 Selenicereus undatus HOM05D026955 ORTHO05D006682 9.0e-06 57.4 28 85.7


User provided reference genes

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