Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR260690 Cardamine hirsuta HOM05D001934 ORTHO05D002139 5.0e-41 170.6 84 100.0
AL1G18510 Arabidopsis lyrata HOM05D001934 ORTHO05D002139 2.9e-20 101.7 69 75.4
AT1G08130 Arabidopsis thaliana HOM05D001934 ORTHO05D002139 2.9e-20 101.7 69 75.4
Carub.0001s0748 Capsella rubella HOM05D001934 ORTHO05D002139 2.9e-20 101.7 69 75.4
CARHR007940 Cardamine hirsuta HOM05D001934 ORTHO05D002139 6.4e-20 100.5 69 75.4
BcaB07g34055 Brassica carinata HOM05D001934 ORTHO05D002139 1.1e-19 99.8 69 73.9
BcaC05g24731 Brassica carinata HOM05D001934 ORTHO05D002139 1.1e-19 99.8 69 73.9
C05p06240 Brassica napus HOM05D001934 ORTHO05D002139 1.1e-19 99.8 69 73.9
BolC5t29379H Brassica oleracea HOM05D001934 ORTHO05D002139 1.1e-19 99.8 69 73.9
BraA06t23726Z Brassica rapa HOM05D001934 ORTHO05D002139 1.1e-19 99.8 69 73.9
Thhalv10006843m.g Eutrema salsugineum HOM05D001934 ORTHO05D002139 1.1e-19 99.8 69 73.9
Sp1g06770 Schrenkiella parvula HOM05D001934 ORTHO05D002139 1.1e-19 99.8 69 73.9
AT1G49250 Arabidopsis thaliana HOM05D001934 ORTHO05D002139 1.9e-19 99.0 69 73.9
A06p05190 Brassica napus HOM05D001934 ORTHO05D002139 4.1e-19 97.8 69 72.5
BcaC07g41965 Brassica carinata HOM05D001934 ORTHO05D002139 5.4e-19 97.4 69 72.5
A09p66010 Brassica napus HOM05D001934 ORTHO05D002139 5.4e-19 97.4 69 72.5
C08p50170 Brassica napus HOM05D001934 ORTHO05D002139 5.4e-19 97.4 69 72.5
BolC8t52546H Brassica oleracea HOM05D001934 ORTHO05D002139 5.4e-19 97.4 69 72.5
BraA09t41940Z Brassica rapa HOM05D001934 ORTHO05D002139 5.4e-19 97.4 69 72.5
Aa31sc759G20 Aethionema arabicum HOM05D001934 ORTHO05D002139 3.0e-17 91.7 69 66.7
Thhalv10028230m.g Eutrema salsugineum HOM05D001934 ORTHO05D002139 3.0e-17 91.7 66 72.7
Thhalv10028321m.g Eutrema salsugineum HOM05D001934 ORTHO05D002139 3.0e-17 91.7 66 72.7
Gohir.A03G029300 Gossypium hirsutum HOM05D001934 ORTHO05D002139 3.0e-17 91.7 69 65.2
Gohir.D03G139300 Gossypium hirsutum HOM05D001934 ORTHO05D002139 8.6e-17 90.1 69 63.8
Gorai.003G146000 Gossypium raimondii HOM05D001934 ORTHO05D002139 8.6e-17 90.1 69 63.8
COL.COLO4_11104 Corchorus olitorius HOM05D001934 ORTHO05D002139 1.1e-16 89.7 66 68.2
Thecc.09G350700 Theobroma cacao HOM05D001934 ORTHO05D002139 4.3e-16 87.8 66 66.7
Cpa.g.sc1.8 Carica papaya HOM05D001934 ORTHO05D002139 5.6e-16 87.4 66 65.2
Ciclev10027871m.g Citrus clementina HOM05D001934 ORTHO05D002139 9.5e-16 86.7 66 65.2
RcHm_v2.0_Chr5g0056931 Rosa chinensis HOM05D001934 ORTHO05D002139 1.2e-15 86.3 69 62.3
Atru.chr3.3525 Acer truncatum HOM05D001934 ORTHO05D002139 1.6e-15 85.9 64 65.6
TPR.G36772 Trifolium pratense HOM05D001934 ORTHO05D002139 2.1e-15 85.5 69 60.9
EL10Ac9g22613 Beta vulgaris HOM05D001934 ORTHO05D002139 2.8e-15 85.1 69 60.9
Glyma.11G193100 Glycine max HOM05D001934 ORTHO05D002139 3.6e-15 84.7 69 60.9
TPR.G36794 Trifolium pratense HOM05D001934 ORTHO05D002139 3.6e-15 84.7 69 59.4
Duzib150G0588 Durio zibethinus HOM05D001934 ORTHO05D002139 4.7e-15 84.3 66 62.1
FvH4_3g30730 Fragaria vesca HOM05D001934 ORTHO05D002139 4.7e-15 84.3 69 62.3
FAN11G3232 Fragaria x ananassa HOM05D001934 ORTHO05D002139 4.7e-15 84.3 69 62.3
FAN16G0005 Fragaria x ananassa HOM05D001934 ORTHO05D002139 6.2e-15 84.0 69 62.3
FAN25G1126 Fragaria x ananassa HOM05D001934 ORTHO05D002139 6.2e-15 84.0 69 62.3
Ca_19318_v3 Cicer arietinum L. HOM05D001934 ORTHO05D002139 8.1e-15 83.6 69 58.0
CsaV3_6G014300 Cucumis sativus L. HOM05D001934 ORTHO05D002139 8.1e-15 83.6 69 59.4
Glyma.12G080900 Glycine max HOM05D001934 ORTHO05D002139 8.1e-15 83.6 66 63.6
Lj3g0025418 Lotus japonicus HOM05D001934 ORTHO05D002139 8.1e-15 83.6 69 59.4
Cfa010294 Carpinus fangiana HOM05D001934 ORTHO05D002139 1.1e-14 83.2 66 63.6
Ca_04368_v3 Cicer arietinum L. HOM05D001934 ORTHO05D002139 1.4e-14 82.8 69 58.0
Sed0019273 Sechium edule HOM05D001934 ORTHO05D002139 1.4e-14 82.8 69 59.4
Hund08363 Selenicereus undatus HOM05D001934 ORTHO05D002139 1.4e-14 82.8 69 58.0
AUR62014959 Chenopodium quinoa HOM05D001934 ORTHO05D002139 1.8e-14 82.4 69 58.0
AUR62029176 Chenopodium quinoa HOM05D001934 ORTHO05D002139 1.8e-14 82.4 69 58.0
ClCG02G021550 Citrullus lanatus HOM05D001934 ORTHO05D002139 1.8e-14 82.4 69 59.4
Medtr4g057340 Medicago truncatula HOM05D001934 ORTHO05D002139 1.8e-14 82.4 69 58.0
Medtr4g057345 Medicago truncatula HOM05D001934 ORTHO05D002139 2.4e-14 82.0 69 56.5
Potri.009G005900 Populus trichocarpa HOM05D001934 ORTHO05D002139 2.4e-14 82.0 66 62.1
Psat7g191720 Pisum sativum HOM05D001934 ORTHO05D002139 4.0e-14 81.3 69 56.5
CiPaw.13G123200 Carya illinoinensis HOM05D001934 ORTHO05D002139 8.9e-14 80.1 66 60.6
FAN21G1990 Fragaria x ananassa HOM05D001934 ORTHO05D002139 8.9e-14 80.1 69 59.4
Oeu040437.1 Olea europaea HOM05D001934 ORTHO05D002139 8.9e-14 80.1 66 60.6
TPR.G8175 Trifolium pratense HOM05D001934 ORTHO05D002139 8.9e-14 80.1 69 56.5
QL01p015243 Quercus lobata HOM05D001934 ORTHO05D002139 1.2e-13 79.7 64 62.5
VMungo1127G0172 Vigna mungo HOM05D001934 ORTHO05D002139 1.2e-13 79.7 66 60.6
Ah.01g003310 Amaranthus hybridus HOM05D001934 ORTHO05D002139 1.5e-13 79.3 69 56.5
Sc06g0010820 Simmondsia chinensis HOM05D001934 ORTHO05D002139 2.0e-13 79.0 69 58.0
Medtr8g468400 Medicago truncatula HOM05D001934 ORTHO05D002139 2.6e-13 78.6 67 58.2
Phvul.011G085900 Phaseolus vulgaris HOM05D001934 ORTHO05D002139 2.6e-13 78.6 65 56.9
TWI75G1147 Tripterygium wilfordii HOM05D001934 ORTHO05D002139 3.4e-13 78.2 66 62.1
Lalb_Chr19g0136941 Lupinus albus HOM05D001934 ORTHO05D002139 4.4e-13 77.8 66 60.6
PGR119G0273 Punica granatum HOM05D001934 ORTHO05D002139 4.4e-13 77.8 66 60.6
TAR625G1443 Trochodendron aralioides HOM05D001934 ORTHO05D002139 5.8e-13 77.4 66 59.1
TAR636G2490 Trochodendron aralioides HOM05D001934 ORTHO05D002139 5.8e-13 77.4 66 59.1
MD11G1147600 Malus domestica HOM05D001934 ORTHO05D002139 9.9e-13 76.6 66 59.1
MD03G1127000 Malus domestica HOM05D001934 ORTHO05D002139 1.7e-12 75.9 66 57.6
arahy.Tifrunner.gnm1.ann1.489L6Z Arachis hypogaea HOM05D001934 ORTHO05D002139 2.2e-12 75.5 66 60.6
arahy.Tifrunner.gnm1.ann1.CF9NWX Arachis hypogaea HOM05D001934 ORTHO05D002139 2.2e-12 75.5 66 60.6
Haze_23710 Corylus avellana HOM05D001934 ORTHO05D002139 2.2e-12 75.5 58 63.8
Manes.11G152000 Manihot esculenta HOM05D001934 ORTHO05D002139 2.2e-12 75.5 66 57.6
MELO3C026949.2 Cucumis melo HOM05D001934 ORTHO05D002139 2.9e-12 75.1 77 53.2
FvH4_3g30740 Fragaria vesca HOM05D001934 ORTHO05D002139 4.9e-12 74.3 63 57.1
vmacro03256 Vaccinium macrocarpon HOM05D001934 ORTHO05D002139 4.9e-12 74.3 66 57.6
arahy.Tifrunner.gnm1.ann1.Z70S0B Arachis hypogaea HOM05D001934 ORTHO05D002139 6.4e-12 73.9 66 60.6
CSS0030578 Camellia sinensis var. sinensis HOM05D001934 ORTHO05D002139 6.4e-12 73.9 66 57.6
CSS0042491 Camellia sinensis var. sinensis HOM05D001934 ORTHO05D002139 6.4e-12 73.9 66 57.6
Actinidia24144 Actinidia chinensis HOM05D001934 ORTHO05D002139 8.4e-12 73.6 66 57.6
Eucgr.J00386 Eucalyptus grandis HOM05D001934 ORTHO05D002139 8.4e-12 73.6 64 57.8
Dinv16217 Davidia involucrata HOM05D001934 ORTHO05D002139 1.1e-11 73.2 66 57.6
Rhsim13G0100300 Rhododendron simsii HOM05D001934 ORTHO05D002139 1.1e-11 73.2 66 56.1
GSVIVG01031470001 Vitis vinifera HOM05D001934 ORTHO05D002139 1.1e-11 73.2 65 58.5
MSTRG.17761 Avicennia marina HOM05D001934 ORTHO05D002139 1.4e-11 72.8 69 52.2
Prupe.6G112300 Prunus persica HOM05D001934 ORTHO05D002139 1.4e-11 72.8 66 56.1
arahy.Tifrunner.gnm1.ann1.E6T32I Arachis hypogaea HOM05D001934 ORTHO05D002139 1.9e-11 72.4 66 59.1
CAN.G546.43 Capsicum annuum HOM05D001934 ORTHO05D002139 1.9e-11 72.4 69 50.7
unitig_22.g5652 Utricularia gibba HOM05D001934 ORTHO05D002139 1.9e-11 72.4 66 56.1
Sabra09G0003200 Salix brachista HOM05D001934 ORTHO05D002139 2.4e-11 72.0 58 62.1
Solyc11g066370.2 Solanum lycopersicum HOM05D001934 ORTHO05D002139 3.2e-11 71.6 69 49.3
Sopen11g026120 Solanum pennellii HOM05D001934 ORTHO05D002139 3.2e-11 71.6 69 49.3
vmacro17296 Vaccinium macrocarpon HOM05D001934 ORTHO05D002139 3.2e-11 71.6 66 56.1
Cc01_g10340 Coffea canephora HOM05D001934 ORTHO05D002139 4.1e-11 71.2 66 57.6
Nn6g35237 Nelumbo nucifera HOM05D001934 ORTHO05D002139 4.1e-11 71.2 66 54.5
Nitab4.5_0004414g0010 Nicotiana tabacum HOM05D001934 ORTHO05D002139 4.1e-11 71.2 69 50.7
CANSAT54G0170 Cannabis sativa HOM05D001934 ORTHO05D002139 5.4e-11 70.9 66 59.1
DCAR_018768 Daucus carota HOM05D001934 ORTHO05D002139 7.1e-11 70.5 66 53.0
Migut.N02546 Erythranthe guttata HOM05D001934 ORTHO05D002139 9.2e-11 70.1 66 54.5
CDE08G0024 Ceratophyllum demersum HOM05D001934 ORTHO05D002139 1.6e-10 69.3 66 56.1
Nitab4.5_0000329g0030 Nicotiana tabacum HOM05D001934 ORTHO05D002139 2.7e-10 68.6 69 49.3
Os10g0489200 Oryza sativa ssp. japonica HOM05D001934 ORTHO05D002139 2.7e-10 68.6 66 53.0
Hma1.2p1_0779F.1_g216700 Hydrangea macrophylla HOM05D001934 ORTHO05D002139 6.0e-10 67.4 66 53.0
Oeu007739.1 Olea europaea HOM05D001934 ORTHO05D002139 6.0e-10 67.4 58 56.9
Peaxi162Scf00420g00330 Petunia axillaris HOM05D001934 ORTHO05D002139 6.0e-10 67.4 69 47.8
Peaxi162Scf01492g00010 Petunia axillaris HOM05D001934 ORTHO05D002139 7.8e-10 67.0 69 47.8
Migut.D00893 Erythranthe guttata HOM05D001934 ORTHO05D002139 1.3e-09 66.2 66 51.5
HanXRQChr01g0019601 Helianthus annuus HOM05D001934 ORTHO05D002139 1.3e-09 66.2 66 50.0
ATR0329G039 Amborella trichopoda HOM05D001934 ORTHO05D002139 3.0e-09 65.1 69 49.3
Lsat_1_v5_gn_1_64561 Lactuca sativa HOM05D001934 ORTHO05D002139 3.9e-09 64.7 66 51.5
Aqoxy1G01108 Aquilegia oxysepala HOM05D001934 ORTHO05D002139 5.1e-09 64.3 66 48.5
Phvul.005G021200 Phaseolus vulgaris HOM05D001934 ORTHO05D002139 5.1e-09 64.3 50 58.0
ECA248G1944 Erigeron canadensis HOM05D001934 ORTHO05D002139 6.6e-09 63.9 66 50.0
Zm00001eb045200 Zea mays HOM05D001934 ORTHO05D002139 6.6e-09 63.9 67 47.8
Peaxi162Scf00420g00341 Petunia axillaris HOM05D001934 ORTHO05D002139 8.7e-09 63.5 69 46.4
Peaxi162Scf03009g00002 Petunia axillaris HOM05D001934 ORTHO05D002139 8.7e-09 63.5 69 46.4
SalBow3G0225 Salvia bowleyana HOM05D001934 ORTHO05D002139 8.7e-09 63.5 66 54.5
SGA_v2.0_scaffold442G51676 Striga asiatica HOM05D001934 ORTHO05D002139 8.7e-09 63.5 66 51.5
Psat1g136680 Pisum sativum HOM05D001934 ORTHO05D002139 1.5e-08 62.8 57 52.6
HanXRQChr11g0345941 Helianthus annuus HOM05D001934 ORTHO05D002139 4.3e-08 61.2 66 51.5
Dinv29375 Davidia involucrata HOM05D001934 ORTHO05D002139 5.6e-08 60.8 66 50.0
SEGI_21231 Sequoiadendron giganteum HOM05D001934 ORTHO05D002139 5.6e-08 60.8 64 51.6
Lj2A1009G37 Lonicera japonica HOM05D001934 ORTHO05D002139 7.3e-08 60.5 66 51.5
Aqoxy1G02004 Aquilegia oxysepala HOM05D001934 ORTHO05D002139 2.8e-07 58.5 66 51.5
AUR62026899 Chenopodium quinoa HOM05D001934 ORTHO05D002139 2.8e-07 58.5 51 52.9
PSO339G0390 Papaver somniferum HOM05D001934 ORTHO05D002139 3.6e-07 58.2 66 47.0
SMO134G0141 Selaginella moellendorffii HOM05D001934 ORTHO05D002139 4.7e-07 57.8 67 49.3
TPR.G35264 Trifolium pratense HOM05D007806 ORTHO05D009818 4.7e-07 57.8 50 58.0
Mapoly0033s0129 Marchantia polymorpha HOM05D001934 ORTHO05D002139 1.4e-06 56.2 69 43.5
HPP92_022658 Vanilla planifolia HOM05D001934 ORTHO05D002139 1.8e-06 55.8 70 42.9
AagrBONN_evm.TU.Sc2ySwM_362.157 Anthoceros agrestis HOM05D001934 ORTHO05D002139 3.1e-06 55.1 67 41.8
Pp3c13_20200 Physcomitrium patens HOM05D001934 ORTHO05D002139 3.1e-06 55.1 67 46.3
Pp3c13_20209 Physcomitrium patens HOM05D001934 ORTHO05D002139 3.1e-06 55.1 67 46.3
SHI06224 Sapria himalayana HOM05D001934 ORTHO05D002139 4.0e-06 54.7 66 45.5


User provided reference genes

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